HG10004861 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004861
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	B3 domain-containing protein At2g31420-like
Location	Chr08: 21000707 .. 21001090 (-)
RNA-Seq Expression	HG10004861
Synteny	HG10004861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGATAGCGATGATGTCTTCAAGACTTTAGATTTAATTTCATTATTCTCTTCTAATCAATCAATCAATGGAAGCTCCAAGGTTCAAAGCTCCGAGAATAATAATACGGAATCGAAAGAAACAAACAATAAGAGGAAGAATAATGCTTCTGACTCTGATCGTAATAAGCCAAAGAGGGAGAGGCGAAAAGAAATAGTGTTTTCGAAGACGATCGAGATGTCGACGGAGTTGAAAGAACGGATCGCTGAACTTGGCGGCACCGACATCCAAATTGTGGTTCAAAAGAAATTACAAGAGACCGATATGAACAACAACCACGGTCGATTATCGATTCCGTTCAAAAAGCTCATGAATGATTTCGTTACGGAAGAGTGTTGA

mRNA sequence

ATGGATTCAGATAGCGATGATGTCTTCAAGACTTTAGATTTAATTTCATTATTCTCTTCTAATCAATCAATCAATGGAAGCTCCAAGGTTCAAAGCTCCGAGAATAATAATACGGAATCGAAAGAAACAAACAATAAGAGGAAGAATAATGCTTCTGACTCTGATCGTAATAAGCCAAAGAGGGAGAGGCGAAAAGAAATAGTGTTTTCGAAGACGATCGAGATGTCGACGGAGTTGAAAGAACGGATCGCTGAACTTGGCGGCACCGACATCCAAATTGTGGTTCAAAAGAAATTACAAGAGACCGATATGAACAACAACCACGGTCGATTATCGATTCCGTTCAAAAAGCTCATGAATGATTTCGTTACGGAAGAGTGTTGA

Coding sequence (CDS)

ATGGATTCAGATAGCGATGATGTCTTCAAGACTTTAGATTTAATTTCATTATTCTCTTCTAATCAATCAATCAATGGAAGCTCCAAGGTTCAAAGCTCCGAGAATAATAATACGGAATCGAAAGAAACAAACAATAAGAGGAAGAATAATGCTTCTGACTCTGATCGTAATAAGCCAAAGAGGGAGAGGCGAAAAGAAATAGTGTTTTCGAAGACGATCGAGATGTCGACGGAGTTGAAAGAACGGATCGCTGAACTTGGCGGCACCGACATCCAAATTGTGGTTCAAAAGAAATTACAAGAGACCGATATGAACAACAACCACGGTCGATTATCGATTCCGTTCAAAAAGCTCATGAATGATTTCGTTACGGAAGAGTGTTGA

Protein sequence

MDSDSDDVFKTLDLISLFSSNQSINGSSKVQSSENNNTESKETNNKRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMNNNHGRLSIPFKKLMNDFVTEEC

Homology

[Close]

BLAST of HG10004861 vs. NCBI nr
Match: XP_004152777.2 (putative B3 domain-containing protein At2g27410 [Cucumis sativus] >KAE8652107.1 hypothetical protein Csa_022429 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-22
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 7   DVFKTLDLISLFSSNQSINGSSKVQSSENNNTESKETNNKR------------------- 66
           DVF+TLDLISLF+S+ + +GSS    +  N+TES+ ++ KR                   
Sbjct: 6   DVFETLDLISLFASDPATDGSSSETQTPENDTESQLSSEKRNNPSGSDDAPRTETRKRKA 65

Query: 67  -----KNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQET 126
                 NN+  S   +PK+ERRK++VFSKTIEM   L++RI ELGG +IQ   QK+LQ+T
Sbjct: 66  REKSNNNNSPGSSGRRPKKERRKDVVFSKTIEMPQMLRDRIEELGGFNIQFATQKRLQDT 125

[Close]

BLAST of HG10004861 vs. NCBI nr
Match: XP_008445565.1 (PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo] >KAA0065235.1 B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 5   SDDVFKTLDLISLFSSNQSINGS------SKVQSSENNNTES-------------KETNN 64
           ++ VFKTLDLISLF+ ++S +GS      S++ S ++ N+               K +  
Sbjct: 4   NNHVFKTLDLISLFAPDRSTDGSSESDTGSQISSEKSKNSSGSDDHKPRMETRRRKASEK 63

Query: 65  KRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMN 124
           ++KN+ S    ++PK+ERRK++VFSKTIEMS  L++RI EL G DIQ V QK+LQ+TDMN
Sbjct: 64  RKKNDNSPGSDHRPKKERRKDMVFSKTIEMSAMLRDRIDELDGFDIQYVTQKRLQDTDMN 123

Query: 125 NNHGRLSIPFKKLMNDFVTEE 127
            NHGRL IPFKKL NDF +EE
Sbjct: 124 KNHGRLLIPFKKLRNDFASEE 144

[Close]

BLAST of HG10004861 vs. NCBI nr
Match: KAG6598443.1 (B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-17
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 3   SDSDDVFKTLDLISLFSSNQSINGSSKVQSSENNNTESKETNNKRKNNASDSDRNKPKRE 62
           + S  V KTLDLIS F  N                       NKRKN   D   ++P+R+
Sbjct: 2   AQSGVVSKTLDLISSFGLN----------------------TNKRKNRDCD---DEPRRK 61

Query: 63  RRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMNNNHGRLSIPFKKLMNDF 122
           RR+E+VFS T+EM   L+ERI  +GGTD+Q+V QK+LQE+D N NHGRL IP KKLMNDF
Sbjct: 62  RRREMVFSSTVEMPAALRERIEAMGGTDVQLVTQKQLQESDRNKNHGRLLIPTKKLMNDF 100

Query: 123 VTEE 127
            TEE
Sbjct: 122 ATEE 100

[Close]

BLAST of HG10004861 vs. NCBI nr
Match: XP_022144152.1 (B3 domain-containing protein At2g31420-like [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-17
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 24  INGSSKVQSSENNNTESKETNNKRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERI 83
           I G  K ++S +N+TE  +T+N   N+ S  ++N  K+ ++ E+VFS TIEM   L++RI
Sbjct: 5   IIGGRKRKNSPDNDTEI-DTDN---NDMSKVNKNDQKKHKQLEVVFSSTIEMPAXLRDRI 64

Query: 84  AELGGTDIQIVVQKKLQETDMNNNHGRLSIPFKKLMNDFVTEE 127
           AELGG DIQIV+QK+LQ+TD+N NHGRLSIP KKL+NDF TEE
Sbjct: 65  AELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFTTEE 103

[Close]

BLAST of HG10004861 vs. NCBI nr
Match: XP_023546349.1 (B3 domain-containing protein At1g05920-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 3   SDSDDVFKTLDLISLFSSNQSINGSSKVQSSENNNTESKETNNKRKNNASDSDRNKPKRE 62
           + S  V KTLDLIS F  +                       NKRKN   D   ++PKR+
Sbjct: 22  AQSGVVSKTLDLISSFGLD----------------------TNKRKNRDCD---DEPKRK 81

Query: 63  RRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMNNNHGRLSIPFKKLMNDF 122
           RR+E+VFS T+EM   L+ERI  +GGTD+Q+V QK+LQE+D N NHGRL IP KKLMNDF
Sbjct: 82  RRREMVFSSTVEMPAALRERIEAMGGTDVQLVTQKQLQESDRNKNHGRLLIPTKKLMNDF 120

Query: 123 VTEE 127
            TEE
Sbjct: 142 ATEE 120

[Close]

BLAST of HG10004861 vs. ExPASy TrEMBL
Match: A0A0A0LL20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361650 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 7   DVFKTLDLISLFSSNQSINGSSKVQSSENNNTESKETNNKR------------------- 66
           DVF+TLDLISLF+S+ + +GSS    +  N+TES+ ++ KR                   
Sbjct: 6   DVFETLDLISLFASDPATDGSSSETQTPENDTESQLSSEKRNNPSGSDDAPRTETRKRKA 65

Query: 67  -----KNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQET 126
                 NN+  S   +PK+ERRK++VFSKTIEM   L++RI ELGG +IQ   QK+LQ+T
Sbjct: 66  REKSNNNNSPGSSGRRPKKERRKDVVFSKTIEMPQMLRDRIEELGGFNIQFATQKRLQDT 125

[Close]

BLAST of HG10004861 vs. ExPASy TrEMBL
Match: A0A5A7VHB3 (B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005760 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.1e-21
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 5   SDDVFKTLDLISLFSSNQSINGS------SKVQSSENNNTES-------------KETNN 64
           ++ VFKTLDLISLF+ ++S +GS      S++ S ++ N+               K +  
Sbjct: 4   NNHVFKTLDLISLFAPDRSTDGSSESDTGSQISSEKSKNSSGSDDHKPRMETRRRKASEK 63

Query: 65  KRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMN 124
           ++KN+ S    ++PK+ERRK++VFSKTIEMS  L++RI EL G DIQ V QK+LQ+TDMN
Sbjct: 64  RKKNDNSPGSDHRPKKERRKDMVFSKTIEMSAMLRDRIDELDGFDIQYVTQKRLQDTDMN 123

Query: 125 NNHGRLSIPFKKLMNDFVTEE 127
            NHGRL IPFKKL NDF +EE
Sbjct: 124 KNHGRLLIPFKKLRNDFASEE 144

[Close]

BLAST of HG10004861 vs. ExPASy TrEMBL
Match: A0A1S3BCJ5 (B3 domain-containing protein At3g25182-like OS=Cucumis melo OX=3656 GN=LOC103488545 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.1e-21
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 5   SDDVFKTLDLISLFSSNQSINGS------SKVQSSENNNTES-------------KETNN 64
           ++ VFKTLDLISLF+ ++S +GS      S++ S ++ N+               K +  
Sbjct: 4   NNHVFKTLDLISLFAPDRSTDGSSESDTGSQISSEKSKNSSGSDDHKPRMETRRRKASEK 63

Query: 65  KRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDMN 124
           ++KN+ S    ++PK+ERRK++VFSKTIEMS  L++RI EL G DIQ V QK+LQ+TDMN
Sbjct: 64  RKKNDNSPGSDHRPKKERRKDMVFSKTIEMSAMLRDRIDELDGFDIQYVTQKRLQDTDMN 123

Query: 125 NNHGRLSIPFKKLMNDFVTEE 127
            NHGRL IPFKKL NDF +EE
Sbjct: 124 KNHGRLLIPFKKLRNDFASEE 144

[Close]

BLAST of HG10004861 vs. ExPASy TrEMBL
Match: A0A6J1CSV9 (B3 domain-containing protein At2g31420-like OS=Momordica charantia OX=3673 GN=LOC111013909 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 24  INGSSKVQSSENNNTESKETNNKRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERI 83
           I G  K ++S +N+TE  +T+N   N+ S  ++N  K+ ++ E+VFS TIEM   L++RI
Sbjct: 5   IIGGRKRKNSPDNDTEI-DTDN---NDMSKVNKNDQKKHKQLEVVFSSTIEMPAXLRDRI 64

Query: 84  AELGGTDIQIVVQKKLQETDMNNNHGRLSIPFKKLMNDFVTEE 127
           AELGG DIQIV+QK+LQ+TD+N NHGRLSIP KKL+NDF TEE
Sbjct: 65  AELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFTTEE 103

[Close]

BLAST of HG10004861 vs. ExPASy TrEMBL
Match: A0A6J1K5B4 (B3 domain-containing protein At1g05920-like OS=Cucurbita maxima OX=3661 GN=LOC111492430 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 45  NKRKNNASDSDRNKPKRERRKEIVFSKTIEMSTELKERIAELGGTDIQIVVQKKLQETDM 104
           NKRKN   D   ++P+R+RR+E+VFS T+EM   L++RI  +GGTD+QIV+QK+LQE+D 
Sbjct: 22  NKRKNRDCD---DEPRRKRRREMVFSSTVEMPAALRQRIEAMGGTDVQIVMQKQLQESDR 81

Query: 105 NNNHGRLSIPFKKLMNDFVTEE 127
           N NHGRL IP KKLMN+F TEE
Sbjct: 82  NKNHGRLLIPTKKLMNEFATEE 100

The following BLAST results are available for this feature:

BLAST of HG10004861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152777.2	9.5e-22	49.31	putative B3 domain-containing protein At2g27410 [Cucumis sativus] >KAE8652107.1 ...	[more]
XP_008445565.1	1.0e-20	49.65	PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo] >KAA006523...	[more]
KAG6598443.1	7.0e-17	50.00	B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022144152.1	9.2e-17	56.31	B3 domain-containing protein At2g31420-like [Momordica charantia]	[more]
XP_023546349.1	1.2e-16	50.00	B3 domain-containing protein At1g05920-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10004861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL20	4.6e-22	49.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361650 PE=4 SV=1	[more]
A0A5A7VHB3	5.1e-21	49.65	B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BCJ5	5.1e-21	49.65	B3 domain-containing protein At3g25182-like OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
A0A6J1CSV9	4.4e-17	56.31	B3 domain-containing protein At2g31420-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K5B4	1.3e-16	60.98	B3 domain-containing protein At1g05920-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of HG10004861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 87..126 e-value: 2.8E-6 score: 27.5
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 30..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..67
None	No IPR available	PANTHER	PTHR31541:SF25	DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED	coord: 30..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004861.1	HG10004861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding