HG10004853 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004853
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein RADIALIS-like 4
Location	Chr08: 20942493 .. 20942774 (+)
RNA-Seq Expression	HG10004853
Synteny	HG10004853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTGTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCCCTGGTTTTATATCCCGAAGACACACCAGATCGGTGGCAAAAAGTGGCCAGAGCAGTGGGTGGAAAAACAGCTGATGAAGTAAAAAGGCATTATGATATCTTGTTGCAAGATCTCATGCATATAGAATCGGGAAAAATTCCTCTTCCCAACTATAAGCCCATTGTTTCCAACGCTTCACTGTATGGTGATGAACAGAGGTAA

mRNA sequence

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTGTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCCCTGGTTTTATATCCCGAAGACACACCAGATCGGTGGCAAAAAGTGGCCAGAGCAGTGGGTGGAAAAACAGCTGATGAAGTAAAAAGGCATTATGATATCTTGTTGCAAGATCTCATGCATATAGAATCGGGAAAAATTCCTCTTCCCAACTATAAGCCCATTGTTTCCAACGCTTCACTGTATGGTGATGAACAGAGGTAA

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTGTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCCCTGGTTTTATATCCCGAAGACACACCAGATCGGTGGCAAAAAGTGGCCAGAGCAGTGGGTGGAAAAACAGCTGATGAAGTAAAAAGGCATTATGATATCTTGTTGCAAGATCTCATGCATATAGAATCGGGAAAAATTCCTCTTCCCAACTATAAGCCCATTGTTTCCAACGCTTCACTGTATGGTGATGAACAGAGGTAA

Protein sequence

MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

Homology

[Close]

BLAST of HG10004853 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-42
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSGS SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDI
Sbjct: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKPIVSN S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQR 93

[Close]

BLAST of HG10004853 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.6e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT +EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKPI  N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          L+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of HG10004853 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-24
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMH 67
          +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNASLYGD 91
          IE+G++PLPNYK   SN+    D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of HG10004853 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSS  S    SSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+A+EVKRHYDI
Sbjct: 1  MASSSMSS----SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPI 82
          L++DLM+IE   +PLP YK +
Sbjct: 61 LVEDLMNIEQDLVPLPKYKTV 77

[Close]

BLAST of HG10004853 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-22
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSS  S    S SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT +EVKRHY++
Sbjct: 1  MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR 94
          L+QD+  IE+G +P PNY+     +N  L  +E+R
Sbjct: 61 LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of HG10004853 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT +E KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNAS 87
          L++D+  IE+G +P P+YK    N++
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of HG10004853 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-20
Identity = 42/78 (53.85%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 16 WTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPL 75
          W+ K+NK FE AL +Y +DTPDRW  VARAV G+T +EVK+HY+IL++D+ +IESGK+P 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 76 PNYKPIVSNASLYGDEQR 94
          PNY+   +  ++  DE+R
Sbjct: 71 PNYR--TTGGNMKTDEKR 86

[Close]

BLAST of HG10004853 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT +EVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          LLQDLMHIESGK+PLPNYKPI  N S+Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR 93

[Close]

BLAST of HG10004853 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          L+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of HG10004853 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR 94
          L+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of HG10004853 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-25
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMH 67
          +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNASLYGD 91
          IE+G++PLPNYK   SN+    D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of HG10004853 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-25
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMH 67
          +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNASLYGD 91
          IE+G++PLPNYK   SN+    D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of HG10004853 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSS  S    SSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+A+EVKRHYDI
Sbjct: 1  MASSSMSS----SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKIPLPNYKPI 82
          L++DLM+IE   +PLP YK +
Sbjct: 61 LVEDLMNIEQDLVPLPKYKTV 77

[Close]

BLAST of HG10004853 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-23
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MASSS  S    S SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT +EVKRHY++
Sbjct: 1  MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR 94
          L+QD+  IE+G +P PNY+     +N  L  +E+R
Sbjct: 61 LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of HG10004853 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDI 60
          MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT +E KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LLQDLMHIESGKIPLPNYKPIVSNAS 87
          L++D+  IE+G +P P+YK    N++
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSN 84

The following BLAST results are available for this feature:

BLAST of HG10004853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884277.1	6.0e-42	93.55	protein RADIALIS-like 4 [Benincasa hispida]	[more]
XP_008444724.1	6.7e-41	90.32	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
KAA0065228.1	6.7e-41	90.32	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_004152694.1	5.6e-40	89.25	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]
XP_022961874.1	2.1e-39	88.17	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of HG10004853 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	7.7e-24	60.24	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	8.5e-23	65.43	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	5.5e-22	54.74	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.6e-21	56.98	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	3.0e-20	53.85	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of HG10004853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC75	3.2e-41	90.32	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BBS2	3.2e-41	90.32	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A0A0LPB1	2.7e-40	89.25	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]
A0A6J1K2Q1	1.0e-39	88.17	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	1.0e-39	88.17	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]

BLAST of HG10004853 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	5.5e-25	60.24	RAD-like 6	[more]
AT1G75250.2	5.5e-25	60.24	RAD-like 6	[more]
AT1G19510.1	6.0e-24	65.43	RAD-like 5	[more]
AT4G39250.1	3.9e-23	54.74	RAD-like 1	[more]
AT2G21650.1	1.1e-22	56.98	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.3E-6 score: 37.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 14..62 score: 6.051468
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 9.92544E-6 score: 37.1698
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 9.5E-22 score: 78.6
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..79
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 4.5E-6 score: 26.8
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004853.1	HG10004853.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity