HG10004796 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004796
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Xylanolytic transcriptional activator xlnR like
Location	Chr08: 20501203 .. 20503482 (-)
RNA-Seq Expression	HG10004796
Synteny	HG10004796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAAGAAGGGGAATAATGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGGTAATCTTTATCCATTTCTTGAATTTCACTCACAAACCCAATACAATAGCTCATAGATGCGATGATTTGCCCTAATTTTTATGAACCAACACAATCCCGAGCTGCTTTTGTCGATTGTATCGATTCTTCATCATTCTTGTTTTAATCATATGGCAATCGCCTCTGCCGTCTGCTTTGCACCTATAATGTCTACTCTGGAAAATGACACTGAATTTTGGCTAGTATTATAGCTGTTGGAAGTGCAAGTTAGCAATCTGAGTACATTTCCCCCCACCCCCACCCGGTCTATTCAGGTTAGCTTTAGAGTGTGGTTATAACATCCACCAATACTTGCTAATCGAGCATAGATTGGCGTTGGTGGATAAGACACACATAACGTTAGGTGAAAACACAGTCCCACATTGGTTAGCAAGTGACATTGACGATTAGAGCTCTCTAGCAGGTAATTTCTTGGTAAAGTCTTCGATTATCGATCGAAGAATTCACTCTTTTTGACACCATGGGCCTTTCCAAGGCTTTGTGAAATATGAAAATCCGATGTTTTAATGTACATGTGTCTTCTACGCTTAAACAAGACTGTCAAAGTATAAAGAAAGTGTCCTAGCAACTCTTTAAGTCCTAATTATTGTGTGTTAGGTATGCAAGTAGGGGGAGGATGAAGCTCATCTCCACTGTTTTCATAGTTCAAAAGGCTGGGAAGGAATATTTCACCTCTTTGAATGATAATGGGTATTCATTCTTCCCCCATTGAAAATATCTGTCAGTTGCTTGATCGGCATAAATTCAAGAACTTGGTCAAAATTTTGTGGATCAAAGCTGTAATCTAAACTTGTGGTATAAACGAAACCAAAAGGTTCTTAAAGGAAAATGCATTGCTTCGGAGGAGAGAGTAGATCTGGGCCATCTGGCGTGACTTCATGCATCTTCTTGGAGTGCTTTATCTAGCTCTTTCTGTAATTACATTTCACTTGTAAATTGTAATGTATTCTGATTGAAATTGAGGTACTTTTATATAAATCTGACCGATGTTAATAAAGATTTTTGTTCTTACTTTTCAATACATCAATGAGAAGTTCTCTTGTTTCAAAAGCATCCATCAATACGAGACATTGCTTATTTCTAGACTTTAGACTACAAGCAAATATATAGATGAAGCTGCCATTAGCTGGAAACCTGACACGAGTTTTCCTCTTACCTTTGTTTTGATTTTAGCATTTCTTTTTTGAACAGTTAATTAGGCATGGGCTGGTGATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGAACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTTTTGTTCGAAGAAGAATTATCATTTCAGGTAAATCCTTGATCATATCCATTGCTTGTTCCCTAATTCAAAAATTGTAATTAATTCTTAATCTATTTGCCCAACAACATAATAGTTTATGGCCAACTTTTTGTGCACAATACACCTTTGGCTTCTTTTAGTAAAAATATGGTTGGATTTTACATGCTAGACAACGATCCATAAAATATTCCGCGGCAGCTCAGGAGATTAGTCCGAGTTCCACGACCTTTAATCTCCCTTTTCGTGGTGTCTCCTCTGTTTACTCTGCAATAGTCCTGTCTCTTACTCAGTTACTCTCCAACAGATTAGAAACTTCTTCTGTTATCTTATTTAAGTTTACTTGTGATGTTGGCTGCAAGATCTTTTCTGATTACTGAATTAGCAGAGTTAAAACAATAAAACAGCATAGATGTGACATAGTTGCACAGGATAGACCTCTTAGTATGGCCGTATTTTTGTAAACCAACTCCCTGTCAATCATTACCATTTTGTTAAAGTTGGTCAGTAGTGGGATCATTTATTTGCCTATCAATGTAGAAGCCAGCAATGACGACGATGATTACTTACTGACAAGTAGTACTCTGGAATCGTCCACTTTATTTTAGTTTGATATTTTGTCGTTCACTAAAAGTTGTAGCTGCTATAGTTTCAAGCATTAAACACATTCAAACTTGCATCTCGTAACACCATTGTACTATTTTTCAGTGGTTTGTAGGTGCCTTATTGATTGTAATTGGCGTGTTGGTTTTGAATAAGTCGAGCATTGAGAAGAAAGAAAGCAAGGACTGA

mRNA sequence

ATGGAAGGGAAGAAGGGGAATAATGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGCATGGGCTGGTGATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGAACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTTTTGTTCGAAGAAGAATTATCATTTCAGTGGTTTGTAGGTGCCTTATTGATTGTAATTGGCGTGTTGGTTTTGAATAAGTCGAGCATTGAGAAGAAAGAAAGCAAGGACTGA

Coding sequence (CDS)

ATGGAAGGGAAGAAGGGGAATAATGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGCATGGGCTGGTGATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGAACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTTTTGTTCGAAGAAGAATTATCATTTCAGTGGTTTGTAGGTGCCTTATTGATTGTAATTGGCGTGTTGGTTTTGAATAAGTCGAGCATTGAGAAGAAAGAAAGCAAGGACTGA

Protein sequence

MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD

Homology

[Close]

BLAST of HG10004796 vs. NCBI nr
Match: XP_022144157.1 (uncharacterized protein LOC111013916 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 107/117 (91.45%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEGKKG  GYVWAISAGFNAA AAIAAKLFS TLIR GLVIAFNLAMWGC+VNSLKALSS
Sbjct: 1   MEGKKGKKGYVWAISAGFNAALAAIAAKLFSSTLIRFGLVIAFNLAMWGCFVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFS NFLCSGLAGFFLFEE LSFQWFVGALLIVIGVL+LNKSSIEKKE+KD
Sbjct: 61  LQATGTNFSTNFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKENKD 117

[Close]

BLAST of HG10004796 vs. NCBI nr
Match: XP_022997366.1 (uncharacterized protein LOC111492304 [Cucurbita maxima] >XP_022997367.1 uncharacterized protein LOC111492304 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSS
Sbjct: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVL+LN+SSIEKKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGAILIVMGVLILNQSSIEKKESKD 117

[Close]

BLAST of HG10004796 vs. NCBI nr
Match: XP_022961823.1 (uncharacterized protein LOC111462473 [Cucurbita moschata] >XP_023545757.1 uncharacterized protein LOC111805096 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSS
Sbjct: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVL+LN+SSIEKKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEPLSFQWFVGAILIVMGVLILNQSSIEKKESKD 117

[Close]

BLAST of HG10004796 vs. NCBI nr
Match: KAG6598488.1 (hypothetical protein SDJN03_08266, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029424.1 hypothetical protein SDJN02_07763 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSS
Sbjct: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LI++GVL+LN+SSIEKKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEPLSFQWFVGAILIIMGVLILNQSSIEKKESKD 117

[Close]

BLAST of HG10004796 vs. NCBI nr
Match: XP_038885716.1 (multidrug resistance protein EbrB isoform X2 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 106/117 (90.60%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEGKKGN GY WAI+AG NAAF+AIAAKLFSYTLIR+GLV+AFNLAMWGCYVNSLK LSS
Sbjct: 1   MEGKKGNKGYAWAIAAGLNAAFSAIAAKLFSYTLIRYGLVVAFNLAMWGCYVNSLKTLSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGALLIVIGVL+LNKSSI KKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEMLSFQWFVGALLIVIGVLILNKSSI-KKESKD 116

[Close]

BLAST of HG10004796 vs. ExPASy TrEMBL
Match: A0A6J1CSW2 (uncharacterized protein LOC111013916 OS=Momordica charantia OX=3673 GN=LOC111013916 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 107/117 (91.45%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEGKKG  GYVWAISAGFNAA AAIAAKLFS TLIR GLVIAFNLAMWGC+VNSLKALSS
Sbjct: 1   MEGKKGKKGYVWAISAGFNAALAAIAAKLFSSTLIRFGLVIAFNLAMWGCFVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFS NFLCSGLAGFFLFEE LSFQWFVGALLIVIGVL+LNKSSIEKKE+KD
Sbjct: 61  LQATGTNFSTNFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKENKD 117

[Close]

BLAST of HG10004796 vs. ExPASy TrEMBL
Match: A0A6J1K7A2 (uncharacterized protein LOC111492304 OS=Cucurbita maxima OX=3661 GN=LOC111492304 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSS
Sbjct: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVL+LN+SSIEKKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGAILIVMGVLILNQSSIEKKESKD 117

[Close]

BLAST of HG10004796 vs. ExPASy TrEMBL
Match: A0A6J1HCY1 (uncharacterized protein LOC111462473 OS=Cucurbita moschata OX=3662 GN=LOC111462473 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSS 60
           MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSS
Sbjct: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           LQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVL+LN+SSIEKKESKD
Sbjct: 61  LQATGTNFSANFLCSGLAGFFLFEEPLSFQWFVGAILIVMGVLILNQSSIEKKESKD 117

[Close]

BLAST of HG10004796 vs. ExPASy TrEMBL
Match: A0A0A0LPF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G365690 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.0e-49
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 5   KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQAT 64
           +G+ GYVWAISAG NAAFAAIAAKLFSYTLIR+ LVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2   EGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYVLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65  GTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           GTNFSANFLCSGLAGFFLFEE LSF+WFVGALLIVIGVL+LNKSSIEKKESKD
Sbjct: 62  GTNFSANFLCSGLAGFFLFEEALSFRWFVGALLIVIGVLILNKSSIEKKESKD 114

[Close]

BLAST of HG10004796 vs. ExPASy TrEMBL
Match: A0A1S3BB59 (multidrug resistance protein EbrB OS=Cucumis melo OX=3656 GN=LOC103488027 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.5e-48
Identity = 101/113 (89.38%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 5   KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQAT 64
           +G+ GYVWAISAG NAA +AIAAKLFSYT  R+GLVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2   EGSKGYVWAISAGLNAALSAIAAKLFSYTFFRYGLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65  GTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           GTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIVIGVL+LNKSSIEKKESKD
Sbjct: 62  GTNFSANFLCSGLAGFFLFEEALSFQWFVGAILIVIGVLILNKSSIEKKESKD 114

[Close]

BLAST of HG10004796 vs. TAIR 10
Match: AT1G30845.1 (unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 71/109 (65.14%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 9   GYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNF 68
           GY+ A++AG NAA AAI+AK F+  +I++GLV+  N+ MW CYVNSL+ALSSLQAT TNF
Sbjct: 10  GYISAVAAGLNAALAAISAKFFTSLVIKYGLVVICNVVMWACYVNSLRALSSLQATVTNF 69

Query: 69  SANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSIEKKESKD 118
           +ANFL SGLAG FLF+E LSF+WF GAL I  GVL+L+KSS++KK S D
Sbjct: 70  AANFLSSGLAGLFLFQESLSFRWFAGALSITTGVLILSKSSVDKKVSSD 118

The following BLAST results are available for this feature:

BLAST of HG10004796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144157.1	3.4e-50	91.45	uncharacterized protein LOC111013916 [Momordica charantia]	[more]
XP_022997366.1	4.4e-50	89.74	uncharacterized protein LOC111492304 [Cucurbita maxima] >XP_022997367.1 uncharac...	[more]
XP_022961823.1	4.4e-50	89.74	uncharacterized protein LOC111462473 [Cucurbita moschata] >XP_023545757.1 unchar...	[more]
KAG6598488.1	5.8e-50	88.89	hypothetical protein SDJN03_08266, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038885716.1	1.3e-49	90.60	multidrug resistance protein EbrB isoform X2 [Benincasa hispida]	[more]

BLAST of HG10004796 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSW2	1.6e-50	91.45	uncharacterized protein LOC111013916 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1K7A2	2.2e-50	89.74	uncharacterized protein LOC111492304 OS=Cucurbita maxima OX=3661 GN=LOC111492304...	[more]
A0A6J1HCY1	2.2e-50	89.74	uncharacterized protein LOC111462473 OS=Cucurbita moschata OX=3662 GN=LOC1114624...	[more]
A0A0A0LPF1	9.0e-49	92.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G365690 PE=4 SV=1	[more]
A0A1S3BB59	4.5e-48	89.38	multidrug resistance protein EbrB OS=Cucumis melo OX=3656 GN=LOC103488027 PE=4 S...	[more]

BLAST of HG10004796 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30845.1	1.6e-34	65.14	unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.3730.20		coord: 7..112 e-value: 1.8E-5 score: 26.9
None	No IPR available	SUPERFAMILY	103481	Multidrug resistance efflux transporter EmrE	coord: 31..109
IPR039632	Transmembrane protein 42	PANTHER	PTHR31965	TRANSMEMBRANE PROTEIN 42	coord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004796.1	HG10004796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane