HG10004767 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004767
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase subunit
LocationChr08: 20230516 .. 20233864 (+)
RNA-Seq ExpressionHG10004767
SyntenyHG10004767
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGATGTCCTTCAGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGGTGGACATACACATTGAATTTAATCTTATTCCATTTTAGTTTTTCATTTTGGATCATTTGAACATTCGAACACTCATTACTTATATGAATGAGTGCTTGATTGGGTATGCCTTGCAGTAATTACACTCTGACTTAATCTTATTATATTGTAGTGTAGACCATTTTTCCTTCAATGTTTATCTGAGTAAAATGTGAAAAGCATCGTTTATTTTTCCATTTCCTATCTCGAGTTTCTATTTTTCTTTTTAATCTTTTAACCAGAACAGATTGAGTCTGGGCTGTGCAGGTTGGGTTTTCTTAACCTGTCATTTTCATTTTAAAAAATTCCTCTTGTAGATAGGAGAGTAAGCGTTTCTATTAGGGAATTTGCATGATCTTCTGCTTTGAGTGTTCAACTTTGAAAGCATGATTTCTTACACAAAAAACATTGTTCAAAATTCATAGTTCACAGGATTTTTATTTGATGAAGGTCACCGCTGTTCGCTTGTGCATTCTGGTTTCAATCAAAGCATAGATAAGTCGACTATTATTATTTTGATGAACAACTAACTAGCTTTCATATATATATATATATAAAGAAAAAAGAAAAAAGAAAAGAAAAGAAAAGGTGGCCACCTACTTAGGATTTAATATCCTACGAGTTTCCTTGACACCCAAATGTTGTAGGGTCAGGCGAGTTGTCCCGTGAGATTAGTCAAGGTGTGCGTAAGTTGGTCCGGACACTCATAGATATGAGAAAAAAAAAAAAGACTATCTCGAATAGGACACAAAGCACCTTCCATTCAGATTAAGCAGCCATCTGCGAATAAGAAAAAAAGGGGAGGAAATTTGATCCCTTGATGTAGCCAAGCCTAACCTTTCATCTAGCTTTACTATTCGGAAAAGAACCAAGAAGTCCACAGACGAGAGTCATACTTCAATTCATATTATCCTCCTCTGCCCAACTCATTAGCTGCAAGGATTGAGTCTATAATTTGGAAATGTCCAGCAAAATCCCGGGGAAATTTTGAGACCATTTTAGAGAGGATAGTTTGAACCTATTTACAAACATTTATGAAGAATTTTGTAAGGGCCCATAGTTAGAGAGGCTTATGGGTCTATTATCTTTCACTTCCTTGCCTTCATCCTCCTTAGCCATAAAGGCAATATAAGTCTTGGTTATATTCACATCAAGGATTTCTTTCTTAAAGAAGCCTAGATGTTGACATGGTATCATGCTTGAGAGTGTCCTAAGTTTTTGTGAAGAATTCCAAGGAAAAACCATCTGGACCCATAGCTTGCTTGGCCTTGGCCCTTGACTAAGACTAGAAATAGCCCTTGGAACTTTATGCTAAATAAAAGCCTACAGGAGTAGAGAACCGGCTGCAGAGGTAGAATTCCAACACAGACTATGGAAGATTATGTGGTCCTCTGAGCTTAGTACGGTAGACTGCTGGGGTTCTGACAATTGGAACCTTAAATTCAGACGCAACTCATTGATGTAGGTGAACGCACAGGCTGACTGATGTAGGTGGATGCACAGGCTGAGTCGTTCATTATTTTGGACGCTTGTTTTTCCAACTAGCAAGATGGACCTTGGAAACTTTGATTAGATTTCCTCTGAAACCTATTTTCCTACTATGGATGAGTTCCGTAATTTCTCCATAAAAAGTGCTATAGGGAAAAATAGATACCCCATGAAGGTTAAGTTCTTTGTTTGGGACATTGATCTTGGTATGGAATCTCCATTAAGTTCCCAACAATTTTTCAGATGCCCTCCTTCTCTCACTTAGTTATTTAACTAATTAGTTGGCTTCCTTTTACAAATAAGAACGAACTCAACCTGTATCACTAGTAAACATACCCGAGGAAAAACTTCTAATTACAGAAATTAACATAAATACTGCTTAATTATGACTTCTACTCATCCCTTGATACAGTATTGTCCTTGGTAGTCTTCCGCCTAAGATGTGTGACATATTGGTGGTGGCTATCATAAAGATCATCCATAAGAATACCTGCATGGAAAATGCAGGTTTTTTTTTTTGTTTTGTTTTAATAAATAAAATCGAAATTTTCCCGACTATAATTGCATGGTGAAAGGACTGAGCTAGCCATTAGTGTATGTGGAACCAAATTCTAACTACTAACCGCTCTGCAAAGTCTAAGATATCGAACTCATTAAAATTCTTAGGCTGGTTTCACATCTTGTTCAAGGCCCAAGTGCCATCATGATTTCCCTCAATGTTATTCAATTCTGCATCTTGAACTTGGTGTTCTGATGGATTTATACCAAATTATTTTCGAATTTGATGCTTTGCTTACATGATTGGAGATATTGAACTCGAGCAAATGCAGTCGAGAAACTATTGATTTAATATTTTATGCACTCTTTTAGTAGACATCTCTAACCTTTTTGTTGTGTGGCTTATTTCAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCTTTTTGAAACATAACCATTATCCCCATGCTTTCTAGGTCTAAGACACAGTATCCTCCCTGCAACACGTCATTGCCATTTCTGCTACATTTGTGATTTTTGCTAGGATTGTTTCTGGTTGGATTTATCTGTGGATTACGGAAAGGGCTTAAACTAAGGAATCTGTAAAATGTTCTCTAGACTAGGCAAATCAATAAACCGACCAGACCCTGGAAATTCATATTGGGTTGGAAATCTCAAGCCGTGAAAACTTTTAGTATAAGCAAAAGTTTCTATGATCTAATATCGATATGCCCCCTTTTATTTGATCATCAGACATCCAGTAAATGTTTTAATTTTGAAATCCTCATGTGACAAATTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGTAGTAAGAGAAAAGAAGTGTATGGTATTAAGATTTTGCTTGAGATATGTAAGTAGTCCACTAATATGAAGCTGTGTCATGTTTGACAGGAAAGGAGGAGATGTGAAAAATGCGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTGACTTTTCAAACACTAAAAATAAAACTCTAATTCCTGGACCCTTCAGGCTTTCTTTCTTTGGTTTTCCCATTAAAAAGAGTCCTAAGTTTGAGTGTGGTTCTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAGTGCCATCATCAAACCAGAGAGAATTGA

mRNA sequence

ATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGATGTCCTTCAGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGCGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAGTGCCATCATCAAACCAGAGAGAATTGA

Coding sequence (CDS)

ATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGATGTCCTTCAGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGCGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAGTGCCATCATCAAACCAGAGAGAATTGA

Protein sequence

MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of HG10004767 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 146

[Close]
BLAST of HG10004767 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 8.9e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYV+CPLCKS+RSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMMSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG+++     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 8   DFLFCNLCGTMMSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC  CG+++     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 13  DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 73  PEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

[Close]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMMSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG+++     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMMSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG+++     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match: Q6MFY5 (DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Polr1h PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 0 

Query: 8   DFLFCNLCGTMMSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC  CG+++     +  V CP C      ++  G+ +  +V   ++   + +S+ + 
Sbjct: 13  DLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVDEG 72

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTC  C  Q +E+
Sbjct: 73  PESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKED 122

[Close]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 9.5e-59
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYS GHDFLFCNLCGTM+SFSSTKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.1e-58
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SF STKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTM+SF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of HG10004767 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           M  SR  +FLFCNLCGTM+   STKY ECP CK+ R+AK+II +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIDEE---KMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]
BLAST of HG10004767 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-17
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
          M  SR  D LFCNLCGTM+   STKY ECPLC++ R+ KEII + ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]
BLAST of HG10004767 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMMSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAE 54
          M  SR  D LFCNLCGTM+   STKY ECPLC++ R+ KEII + ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]
BLAST of HG10004767 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-06
Identity = 30/110 (27.27%), Postives = 56/110 (50.91%), Query Frame = 0 

Query: 11  FCNLCGTMMSF---SSTKYV--ECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLID 70
           FC  CG ++ +    S+++    CP   +     EI  +++        ++K +   +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLL-------VKKSIEPVVTK 62

Query: 71  EEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  DDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of HG10004767 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 48.1 bits (113), Expect = 5.4e-06
Identity = 29/107 (27.10%), Postives = 50/107 (46.73%), Query Frame = 0 

Query: 11  FCNLCGTMMSF--SSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEK 70
           FC  CG ++ +         C  C         I R++        ++K +   +  ++ 
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCSTC----PYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI 62

Query: 71  MQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
              ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:
BLAST of HG10004767 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598510.14.0e-5998.28DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub... [more]
XP_023546814.14.0e-5998.28DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_022144336.18.9e-5998.28DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
XP_022997634.12.0e-5898.28DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_02299763... [more]
XP_038886279.12.0e-5897.41DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] ... [more]
BLAST of HG10004767 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5TM501.2e-1032.73DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ... [more]
Q1RMP01.6e-1032.73DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2... [more]
Q9P1U02.1e-1032.73DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE... [more]
Q1XHV82.1e-1032.73DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H... [more]
Q6MFY51.3e-0932.73DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Pol... [more]
BLAST of HG10004767 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CTE64.3e-5998.28DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140... [more]
A0A6J1KC199.5e-5998.28DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ... [more]
A0A6J1HDS41.2e-5897.41DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302... [more]
A0A0A0LKC48.1e-5895.69DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
A0A1S3BBZ41.2e-5694.83DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
BLAST of HG10004767 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G25940.11.7e-3155.93TFIIB zinc-binding protein [more]
AT1G20065.15.2e-1761.29FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G20065.22.7e-1360.38FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT4G07950.14.2e-0627.27DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.15.4e-0627.10DNA-directed RNA polymerase, subunit M, archaeal [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 76..115
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 77..112
e-value: 8.5E-16
score: 57.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 74..114
score: 12.826397
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 9..116
e-value: 4.2E-27
score: 92.8
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
NoneNo IPR availableGENE3D2.20.25.10coord: 62..116
e-value: 1.8E-16
score: 61.3
NoneNo IPR availablePANTHERPTHR11239:SF19DNA-DIRECTED RNA POLYMERASE SUBUNITcoord: 1..114
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 55..116
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 76..116
e-value: 1.39187E-20
score: 76.0876

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004767.1HG10004767.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding