HG10004755 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004755
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pseudouridine synthase
Location	Chr08: 20144950 .. 20149988 (-)
RNA-Seq Expression	HG10004755
Synteny	HG10004755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGAAAACCAAAAACGAAATATCGAAGTCGGGAGAATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCTTCTTCTATTCAGTTGTTTTTCCCTCGAAATCATAGAAGAATCACTTCTAATGTTCTTCGATTTGCCACCAATCTCTCCACTAAATGCTCGGATTACGATGAATATGGTGAAGCTCAATCCGAACGGAGAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACATAAATCCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTAGCGACATTTTTCCGTTGAGAAGCTACATTTGATGATTTTGTTTTAAAATTTATTTAGCTTATTTCTGCTCTTTTGATATGGCTATCAAGTGGTCTGTAATCTGGTTGGTAAATTATTTTTAGCTCTAACTGCCCTGTTTTTGTTCTATACTTGAGTTCTTAATTTGTGCGTTCATTGGCAACTTCTATATGGTTTTATACTCAAGCAGGTTTCTCACAATGTAAAAGCTGGGGATATGATTAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATGTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCAGCACACATGGTAACGATTCAAAAGGCTTTATGTTTCAAGTTCGACATCGTTATTATTAGTACTATAGGAAGTTATTTGTGGATGCAAGATATCAATACTTGTGGATGAAATTAAATAGATTGAAATTTGGACTCTTCTGCATTTAGAATTAGATCCATCATCGACTTTCTGAATCCTTGTAACAACGTTTATCTAAATCCTAATTAGAATTCCAATTTGTGATAGCAGTTTTCTCCATGATTCAGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGAGGAACATCCGTCGGATATGGATATTTCTGATGATGAGTTCAGTTCAATTGAAATTATTTCTAGAGTTTCTGAGGCACCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGTGATTTGCTCTCCCCTTTTAAGCTTCCTTGCTGCTGCTTATCTGAAGATATAATCAGACAATTCAAGTTTGCAGCTCAAAAACACATGTAATATCATGTCTTAACTCCTAAGTTTGTTGCATTTGAACTACAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTACATCAGTCTCACATGTGGAGTTTCTCCCTCGACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATCCGCATGACCGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTAATTAGTTTTTCTTCATTTTTTTTATTTATTTTATGTACGTAATTATTTTCAATTATAGAAAATATGTAAATATTATTAAGTTTGGGCGTTCATGATTCGAAGTTGAAACACGGAATGTTCCACAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGGTGCGTAGAACTTCTTGCTCCTTGGGCTGCTTCAAATGACAAAAAATTTATATCACAATCCATCAAACAATGCGTTTAGAACATAAATAATGTTCCCTCAACACCATGTATATATATGTGCAAAGAAAAGACATACATTTCTTTTGTTTCTAAAAGATTTCTCTATGATACTGCTACTGTTTTCCAGTCATAGCGTGTGCATACGTAAACTAAAGTTACAATATAATGAGTCAGAGTTACACCTTGAGCATACAAGCAGCCACATTTATCATTCCTCGTGGGCGGCAGTTTCATTTCTTTTCACTTTTTGAAAATTGAAATGTAGTTTTTACTCTCTACTCGGTCTTAGGAGTGAATATTTGTGAAGTAGATCCGTGCACACGCAAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAAAACATCATCTAGTTGTCACAGCCAACTTATGCAACTTGTTTCTTCATTAGAGAGGCCCTGCCTTCATGCTCTGACTCTTGGGTTAGAAAATAAATCTTTACGAGCTCATTTAGTTACTTTCTTATTTCATTCTCCTTTCCATTTTTGAGAAATAGATATGATTTTGATCTTCCCTCTTCTTTGTTTTTCCTAAAATAGTTTTTAATGTTGGTTTCTTATTTCTAGTATTTTGAAACTGAATGGAATTTCTATTTATATTATTTTCTCTAATATATGTATGCAAAATATCAAAACATTAATTTGACATATATTTAATTCCAAGTTTCAGTTAAAATTCCACTTATTGAAAAAAAATTTTTTAGAGAAAATAAAATAATGCCGATTGCTAATCTCATTTTTGTTTTCTTTTTAATCTAAAGAGAGAGAGAGAGCAAAGCAAGAAATATTATATAAATATGTTCTTGTTTTTTATGATAAAAGTGCCCGCAATAAAAAGTGAGAAACAATATCGTTAAAAATGAACCTTAGCTTGTTCATTTCTTCTGTAAACAACTAATTCAAGATCACTGAACGATTTGTAGGTTTGTACATCCTCACACAGGGAAGAACGTACGATTCTCATGCCCACCCCCAACAGATTTTGCTGAAATTTTGAGTCAGCTTCGTGAAATTGGCACAAAAAAGGTATCCCTTATTTTCTTTTCTTTCATTTTTTTTACTCGAGTCAAGCTCTTTGCATGGTAATTGGTTATTTTACAGATTTTGTGTTCATCCATCATAATATCAAAATTGGCCCGGGGGCTGCAATTGACACACACCAACCTAATTCATTCCTACCTGGACAGCTAATATATGCCTATTTTCTGGCCGCCCCCTTGCCATGCTATCTAATACACAGTCTTTTCTATTTACTAGCCATATATTACCTGCTTCTTGCGTTTGGAATGACTATTTTATAGATACAAACTAACTTATGAAGTCTACTGAAGTTAAAATAAATTTAAGTTGTTTCATGAATGGTTGAAAATTTAGCAATACATAAAATATATTTGTTATTTAGATGGTGTTTAAAGACATGAAACGTTGAAGACATGATAGATATTATATAATAACTAAATAGCAGACAAAGAGATATAAAAGTTCTTCTACTTGCTTCTTATATATAGTATGAATATAGATCTTTGTTCTAGATATGCCAGGTTATCTATACAAATGACATAATGGAGACAAATTCCCAGAACAATTTTAAACCCCAAGTCATCACGAAATTTCGTATCATTCTTGTGGATTGATCTTTTGTAGGTCCACTGCTAGATAGTGCAAATTGAAATAATTTTGAGCTTTACAACCAGATTAGATGTTGAACAATGGTTTTCCAGTTTAACTAAGAACAGAGTGTTGTGATAAAAGTTGCAGGTTACCAAATCTTAGCTGGGAGCCTCCAGTATCTGGCAAGTAGACTCATCGTCAAATGACTTGAAAATGAGAGACCGAGAAGGTACATTAAACCCTAATATACGACCATTTAAGTTGGGATGTCTGAAGCACAAATTTAAGTTTTTGGTAACTTACATCTTTTGTCTATTAGATTCATTTAATTGTTGAAATTTAAAATATTCATTCACAGATTCCCAGCGTTGAATTCTACATATTTCTAATCTTTGCCATTAATATCGATTAATGAAACATAGACATGACATTCATTTCTTAAAATTTAGATGAAGAGAAATAATTGAATTCTCTCTTCTCGCCACCGCTCCTTTTATTGCATTAACAACTTCAGCAACCTTTCCGCCTTCTTTTTGCTTCTTTCCATAATAGGAATATGTTGGTGTTTGGGTTGGTGTGTTTTACTTTGTGATTTTCCTTTGAAAATTCAACTCTCTGAATTTGATTACAATATACATAGGAAATGTTCCTGAATGCTCAATAACCCGACATTGGAATCGAGATGTAGCAGCATGCAACAATGGCATAAGGAGCAGCGGAAACCCCACACGATCTCAGTACTTTTGATGGTGTTTCTTCGGTCCAATCCAAACGATCGTGTAAGGTACCTAGTTAGAGATATTAGTATGGTTTTCATAAAGGCATTAAGGGTAATTAGTTGGAAAGTTTGTGTATTTGGTTATAAATTGAGGGAAGGGGGATTGAGGGAAGACAAACAATTGTTGAGTGATTTAGAACTTGGATATTTGGGCCGTAAATCACTCAACAATTGTCTGTCTTTCCTCAATCCCCCTCCCTCCATATATAACCAAATACACTAAGGGTATATTTGAGAGTGATTTTAAAATGGCTAAAATCACTTTTGTCATTTTCAAAATCACCATGAAATATGTTTTTAATCCTTTAAAACTAATTTTGATGATTGAAAATTGTATTTCAAAGTGTAAAATTGAAAATTAAATTAATTTTGAGTGATTAAAGTATGTTTTTTAGTGATTTTAGAAATGACAAAAGTGATTTTATTGATTTTAAAATTACTCTCAAAGATGCCTTAACTAACTCCCTATCTAATTGATACCCTTATGTCCTGCTTATGCCCATATTAATACTATACTAATATCCCTAGCTAGGTTACCTTAGAAATTGTTGCTTGTGTTAAATATTTTCCTACTCCCAGCCTTCCCTCAATCCCCCGCCTCGTGTTCAACTTAATATTGATGGTAAGCCATCGTTGCAATCAATCCATGTGGTTCAATATTCATTGCAAATATGCTTAGATATTATTGCAGTAAATAGAGACTCCCTTGAGCGAATTCAAATTGGGAATTTGGGACATTTCAAGTTAACGACGGTGAAGAAGTGGACAAGCTGTTCTTTGTAA

mRNA sequence

ATGAGCGAAAACCAAAAACGAAATATCGAAGTCGGGAGAATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCTTCTTCTATTCAGTTGTTTTTCCCTCGAAATCATAGAAGAATCACTTCTAATGTTCTTCGATTTGCCACCAATCTCTCCACTAAATGCTCGGATTACGATGAATATGGTGAAGCTCAATCCGAACGGAGAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACATAAATCCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATATGATTAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATGTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCAGCACACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGAGGAACATCCGTCGGATATGGATATTTCTGATGATGAGTTCAGTTCAATTGAAATTATTTCTAGAGTTTCTGAGGCACCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTACATCAGTCTCACATGTGGAGTTTCTCCCTCGACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATCCGCATGACCGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGCCTTCCCTCAATCCCCCGCCTCGTGTTCAACTTAATATTGATGGTAAGCCATCGTTGCAATCAATCCATGTGGTTCAATATTCATTGCAAATATGCTTAGATATTATTGCAGTAAATAGAGACTCCCTTGAGCGAATTCAAATTGGGAATTTGGGACATTTCAAGTTAACGACGGTGAAGAAGTGGACAAGCTGTTCTTTGTAA

Coding sequence (CDS)

ATGAGCGAAAACCAAAAACGAAATATCGAAGTCGGGAGAATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCTTCTTCTATTCAGTTGTTTTTCCCTCGAAATCATAGAAGAATCACTTCTAATGTTCTTCGATTTGCCACCAATCTCTCCACTAAATGCTCGGATTACGATGAATATGGTGAAGCTCAATCCGAACGGAGAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACATAAATCCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATATGATTAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATGTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCAGCACACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGAGGAACATCCGTCGGATATGGATATTTCTGATGATGAGTTCAGTTCAATTGAAATTATTTCTAGAGTTTCTGAGGCACCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTACATCAGTCTCACATGTGGAGTTTCTCCCTCGACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATCCGCATGACCGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGCCTTCCCTCAATCCCCCGCCTCGTGTTCAACTTAATATTGATGGTAAGCCATCGTTGCAATCAATCCATGTGGTTCAATATTCATTGCAAATATGCTTAGATATTATTGCAGTAAATAGAGACTCCCTTGAGCGAATTCAAATTGGGAATTTGGGACATTTCAAGTTAACGACGGTGAAGAAGTGGACAAGCTGTTCTTTGTAA

Protein sequence

MSENQKRNIEVGRMISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANYAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQPSLNPPPRVQLNIDGKPSLQSIHVVQYSLQICLDIIAVNRDSLERIQIGNLGHFKLTTVKKWTSCSL

Homology

[Close]

BLAST of HG10004755 vs. NCBI nr
Match: XP_038886062.1 (RNA pseudouridine synthase 2, chloroplastic isoform X4 [Benincasa hispida])

HSP 1 Score: 625.5 bits (1612), Expect = 3.1e-175
Identity = 314/332 (94.58%), Postives = 321/332 (96.69%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSIQLFFPRN RRIT +VLRF+ NLST+ SDYDEYGEAQSERRAN+
Sbjct: 1   MISVCSARTIQASPSSIQLFFPRNRRRITPDVLRFSVNLSTRSSDYDEYGEAQSERRANF 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AGIRLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG
Sbjct: 61  AGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRAEPEDID+DIVYED HVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMVATS  E PSDMDISDDEFSS+EI SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVATSKGELPSDMDISDDEFSSVEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFK HSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA
Sbjct: 241 HSHAHLSAQFKLHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 300

Query: 314 KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 332

[Close]

BLAST of HG10004755 vs. NCBI nr
Match: XP_038886060.1 (RNA pseudouridine synthase 2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 616.7 bits (1589), Expect = 1.5e-172
Identity = 314/344 (91.28%), Postives = 321/344 (93.31%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSIQLFFPRN RRIT +VLRF+ NLST+ SDYDEYGEAQSERRAN+
Sbjct: 1   MISVCSARTIQASPSSIQLFFPRNRRRITPDVLRFSVNLSTRSSDYDEYGEAQSERRANF 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AGIRLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG
Sbjct: 61  AGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRAEPEDID+DIVYED HVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMVATS  E PSDMDISDDEFSS+EI SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVATSKGELPSDMDISDDEFSSVEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFK HSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA
Sbjct: 241 HSHAHLSAQFKLHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 300

Query: 314 KHAAS------------RYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAAS            RYKVMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASVHDEKWKHGTFHRYKVMEILAQGGSSLVEWRLETGRTHQ 344

[Close]

BLAST of HG10004755 vs. NCBI nr
Match: XP_038886059.1 (RNA pseudouridine synthase 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 615.5 bits (1586), Expect = 3.3e-172
Identity = 314/347 (90.49%), Postives = 321/347 (92.51%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSIQLFFPRN RRIT +VLRF+ NLST+ SDYDEYGEAQSERRAN+
Sbjct: 1   MISVCSARTIQASPSSIQLFFPRNRRRITPDVLRFSVNLSTRSSDYDEYGEAQSERRANF 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AGIRLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG
Sbjct: 61  AGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRAEPEDID+DIVYED HVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMVATS  E PSDMDISDDEFSS+EI SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVATSKGELPSDMDISDDEFSSVEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFK HSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA
Sbjct: 241 HSHAHLSAQFKLHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 300

Query: 314 KHAAS---------------RYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAAS               RYKVMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASSLGVHDEKWKHGTFHRYKVMEILAQGGSSLVEWRLETGRTHQ 347

[Close]

BLAST of HG10004755 vs. NCBI nr
Match: XP_038886063.1 (RNA pseudouridine synthase 2, chloroplastic isoform X5 [Benincasa hispida])

HSP 1 Score: 615.5 bits (1586), Expect = 3.3e-172
Identity = 314/347 (90.49%), Postives = 321/347 (92.51%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSIQLFFPRN RRIT +VLRF+ NLST+ SDYDEYGEAQSERRAN+
Sbjct: 1   MISVCSARTIQASPSSIQLFFPRNRRRITPDVLRFSVNLSTRSSDYDEYGEAQSERRANF 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AGIRLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG
Sbjct: 61  AGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRAEPEDID+DIVYED HVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMVATS  E PSDMDISDDEFSS+EI SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVATSKGELPSDMDISDDEFSSVEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFK HSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA
Sbjct: 241 HSHAHLSAQFKLHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 300

Query: 314 KHAAS---------------RYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAAS               RYKVMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASSLGVHDEKWKHGTFHRYKVMEILAQGGSSLVEWRLETGRTHQ 347

[Close]

BLAST of HG10004755 vs. NCBI nr
Match: XP_038886061.1 (RNA pseudouridine synthase 2, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 615.5 bits (1586), Expect = 3.3e-172
Identity = 314/347 (90.49%), Postives = 321/347 (92.51%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSIQLFFPRN RRIT +VLRF+ NLST+ SDYDEYGEAQSERRAN+
Sbjct: 1   MISVCSARTIQASPSSIQLFFPRNRRRITPDVLRFSVNLSTRSSDYDEYGEAQSERRANF 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AGIRLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG
Sbjct: 61  AGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRAEPEDID+DIVYED HVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMVATS  E PSDMDISDDEFSS+EI SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVATSKGELPSDMDISDDEFSSVEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFK HSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA
Sbjct: 241 HSHAHLSAQFKLHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 300

Query: 314 KHAAS---------------RYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAAS               RYKVMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASSLGVHDEKWKHGTFHRYKVMEILAQGGSSLVEWRLETGRTHQ 347

[Close]

BLAST of HG10004755 vs. ExPASy Swiss-Prot
Match: Q3ECD0 (RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76050 PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.2e-105
Identity = 197/279 (70.61%), Postives = 222/279 (79.57%), Query Frame = 0


Query: 70  RANYAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHN 129
           R N AG+R+EE VD   GK+RLDSWIS RING+SRARVQSSIR GLV+VNGR++DKVSHN
Sbjct: 63  RVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHN 122

Query: 130 VKAGDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNA 189
           VK+GD +NCTISELQPL+AE EDI +DIVYED+HVLVVNKPAHMVVHPAPGN TGTLVN 
Sbjct: 123 VKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNG 182

Query: 190 ILNHCSLPMVATSNEEHPSDMD---ISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGL 249
           IL+HCSLP V  SN E   D D    SDDE  +    S    A +RPGIVHRLDKGT+GL
Sbjct: 183 ILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYA--ASVRPGIVHRLDKGTTGL 242

Query: 250 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSG 309
           LVVAKDEHSHAHL+ QFK H+IERVY+SLT GV     GRIE+PI RD +NRIRM A+ G
Sbjct: 243 LVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPG 302

Query: 310 TNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
                 A+HAASRYKV+E  A GGS+LVEWRLETGRTHQ
Sbjct: 303 GVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 339

[Close]

BLAST of HG10004755 vs. ExPASy Swiss-Prot
Match: Q5Z8P2 (RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0717400 PE=2 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.5e-100
Identity = 200/339 (59.00%), Postives = 240/339 (70.80%), Query Frame = 0


Query: 20  ARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQS-ERRANYAGIRL 79
           A T  ASP +I        RR      R       +C   D   EA +  RR  + G RL
Sbjct: 2   ATTAAASPPAIATALSALLRRQRRRSSRCVGASHARCLAADANAEAVAPSRRGGHGGTRL 61

Query: 80  EETVDINPGKVRLDSWISCRI--NGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMI 139
           EE V    G+ R+D+WIS R+   G+SRAR+Q+SIRAGLV VNGR + KVSH VK GD++
Sbjct: 62  EEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIV 121

Query: 140 NCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSL 199
           +CT+ ELQPLRAEPEDI +DIVYED+H+LVVNKPAHMVVHPAPGNA GTLVNAIL+HC +
Sbjct: 122 SCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKI 181

Query: 200 PMVA-----TSNEEHP----SDMDISD-DEFSSIEIISRVSEAPIRPGIVHRLDKGTSGL 259
                    + ++E P     D+D+ D D+F++ E+ S V EA +RPGIVHRLDKGTSGL
Sbjct: 182 STFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGL 241

Query: 260 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSG 319
           LVVAKDEHSHA L+ QFK H+I RVYISLTCG     +GRIEVPI RDPNNRIRM A  G
Sbjct: 242 LVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG 301

Query: 320 TNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           + +  +A+HAASRYKV E+ A GGS+LVEWRLETGRTHQ
Sbjct: 302 SGHR-YARHAASRYKVREVFAGGGSALVEWRLETGRTHQ 339

[Close]

BLAST of HG10004755 vs. ExPASy Swiss-Prot
Match: P50513 (Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-40
Identity = 107/257 (41.63%), Postives = 147/257 (57.20%), Query Frame = 0


Query: 90  RLDSWISCRINGISRARVQSSIRAGLVS-VNGRIIDKVSHNVKAGDMINCTISELQPLRA 149
           RLD  ++  I  +SR R+++ I +G VS   G ++   +  +K+ D     I   +P   
Sbjct: 16  RLDRALASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVDIPLPRPAHN 75

Query: 150 EPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPS 209
           EP+DI ++IV+EDEH+LVVNKPA MVVHPA GN   TLVNA+L HC+             
Sbjct: 76  EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCA------------- 135

Query: 210 DMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSI 269
                  + S I  ++       RPGIVHR+DK TSGLLVVAK + +HA L+AQF  HSI
Sbjct: 136 ------GKLSGIGGVA-------RPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSI 195

Query: 270 ERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHAKHAASRYKVMEILAQ 329
            R Y ++  G  PS  G ++ P+ R   NR +M  VS    +   K A + Y+++  L  
Sbjct: 196 NRRYRAIVDG-HPSLQGHVDAPLARSSVNRQKMAIVS----DGRGKRAVTHYRMITPLK- 239

Query: 330 GGSSLVEWRLETGRTHQ 346
             +SL+E RLETGRTHQ
Sbjct: 256 -NASLIECRLETGRTHQ 239

[Close]

BLAST of HG10004755 vs. ExPASy Swiss-Prot
Match: Q45480 (Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-37
Identity = 97/256 (37.89%), Postives = 140/256 (54.69%), Query Frame = 0


Query: 90  RLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPLRAE 149
           R+D +++   N  SR +VQ  ++ G V VNG  + K ++ ++ GD +  T+ E + L   
Sbjct: 16  RIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQVTVTVPEPEALDVL 75

Query: 150 PEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPSD 209
            E +D+DI YED+ VLVVNKP  MVVHPAPG+ TGTLVN ++ HC+              
Sbjct: 76  AEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT-------------- 135

Query: 210 MDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIE 269
                 + S I  +       +RPGIVHR+DK TSGLL+VAK++ +H  L  Q    ++ 
Sbjct: 136 ------DLSGINGV-------MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVNKTVT 195

Query: 270 RVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHAKHAASRYKVMEILAQG 329
           R Y ++  G+     G I+ PI RD  +R  MT           K+A + + V+E     
Sbjct: 196 RKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVTR------DGKNAVTHFHVLERFQD- 235

Query: 330 GSSLVEWRLETGRTHQ 346
             +LVE +LETGRTHQ
Sbjct: 256 -FTLVECQLETGRTHQ 235

[Close]

BLAST of HG10004755 vs. ExPASy Swiss-Prot
Match: P74346 (Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1629 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-36
Identity = 100/301 (33.22%), Postives = 155/301 (51.50%), Query Frame = 0


Query: 89  VRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPLRA 148
           VRLD W++ ++  +SR+R Q  I +G V  NG +    +  +K GD +   I EL PL  
Sbjct: 32  VRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDV 91

Query: 149 EPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPS 208
             ++I +DI+YEDE ++++NKPA +VVHP PG+  GT+VNA+L HC              
Sbjct: 92  VAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHC-------------- 151

Query: 209 DMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSI 268
                  + + I  +        RPGIVHRLDK T+G +VVAK E +  +L  Q K+ + 
Sbjct: 152 ------PDLAGIGGVQ-------RPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTA 211

Query: 269 ERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHAKHAASRYKVMEILAQ 328
            R+Y  +  G      G + +P+ R P +R +M  V         + A + ++++E +  
Sbjct: 212 RRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVPVEKG---GREAVTHWRLLERI-- 271

Query: 329 GGSSLVEWRLETGRTHQPSLN---------------PPPRVQLNIDGKPSLQSIHVVQYS 375
           G  S +E++LETGRTHQ  ++                P  V +N+ G    Q++H  Q S
Sbjct: 272 GNHSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVNLPG----QALHAHQLS 296

[Close]

BLAST of HG10004755 vs. ExPASy TrEMBL
Match: A0A1S3BCE4 (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.3e-170
Identity = 302/332 (90.96%), Postives = 312/332 (93.98%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSI  FFPRN RRI SNVLRF+ N S++CSDYDEY EAQSER ANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AG RLEETVDINPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGR+IDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           D+INCTISELQPLRAEPEDID+DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMV+TS  EH SD D+SDDEFSSIE+ SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFKQHSIERVYISLTCGV PSTAGRIE+PICRDPNNRIRMTA  GT NNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 314 KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAASRY VMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQ 332

[Close]

BLAST of HG10004755 vs. ExPASy TrEMBL
Match: A0A5A7VHA3 (Pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001610 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.3e-170
Identity = 302/332 (90.96%), Postives = 312/332 (93.98%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSI  FFPRN RRI SNVLRF+ N S++CSDYDEY EAQSER ANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AG RLEETVDINPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGR+IDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           D+INCTISELQPLRAEPEDID+DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMV+TS  EH SD D+SDDEFSSIE+ SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFKQHSIERVYISLTCGV PSTAGRIE+PICRDPNNRIRMTA  GT NNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 314 KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAASRY VMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQ 332

[Close]

BLAST of HG10004755 vs. ExPASy TrEMBL
Match: A0A1S3BD56 (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.3e-170
Identity = 302/332 (90.96%), Postives = 312/332 (93.98%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCSARTIQASPSSI  FFPRN RRI SNVLRF+ N S++CSDYDEY EAQSER ANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AG RLEETVDINPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGR+IDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           D+INCTISELQPLRAEPEDID+DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 253
           CSLPMV+TS  EH SD D+SDDEFSSIE+ SRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 254 HSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHA 313
           HSHAHLSAQFKQHSIERVYISLTCGV PSTAGRIE+PICRDPNNRIRMTA  GT NNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 314 KHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           KHAASRY VMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQ 332

[Close]

BLAST of HG10004755 vs. ExPASy TrEMBL
Match: A0A0A0LKD7 (Pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G346580 PE=3 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 2.2e-166
Identity = 298/333 (89.49%), Postives = 311/333 (93.39%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKC-SDYDEYGEAQSERRAN 73
           MISVCSARTIQASPS I  FFP N RRI SNVLR ++N ST+C SDYDEY EAQSER AN
Sbjct: 1   MISVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIAN 60

Query: 74  YAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKA 133
           YAG RLEETVD+NPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGR+IDKVSHNVKA
Sbjct: 61  YAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120

Query: 134 GDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 193
           GD+INCTISELQPLRAEPEDID+DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN
Sbjct: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180

Query: 194 HCSLPMVATSNEEHPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKD 253
           HCSLPMVATS  E+ SD D+SDDEFSSI + SRVSEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 HCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 254 EHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPH 313
           EHSHAHLSAQFKQHSIERVYISLTCGV PSTAGRIE+PICRDPNNRIRMTA+ GT NNPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPH 300

Query: 314 AKHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           AK+AASRY VMEILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 AKYAASRYNVMEILAQGGSSLVEWRLETGRTHQ 333

[Close]

BLAST of HG10004755 vs. ExPASy TrEMBL
Match: A0A6J1CMS3 (Pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111012905 PE=3 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.8e-160
Identity = 295/333 (88.59%), Postives = 309/333 (92.79%), Query Frame = 0


Query: 14  MISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANY 73
           MISVCS R IQA+P SIQLFFPRN  RITSNV R ATN ST+CSDYDE GEA SER  NY
Sbjct: 1   MISVCSVRAIQAAP-SIQLFFPRNRGRITSNVHRIATNHSTRCSDYDECGEAHSERITNY 60

Query: 74  AGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAG 133
           AG+RLEE VD+N GK+RLDSWISCRINGISRARVQSSIRAGLV+VNGR+IDKVSHN+KAG
Sbjct: 61  AGMRLEEIVDVNSGKIRLDSWISCRINGISRARVQSSIRAGLVTVNGRVIDKVSHNIKAG 120

Query: 134 DMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 193
           DMINCTISELQPLRA+PEDID+DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAKPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 194 CSLPMVATSNEEHPSDMDISDDEFSSIEII-SRVSEAPIRPGIVHRLDKGTSGLLVVAKD 253
           CSLPMVATSN E  SDMDISDDEFSS EI+ SR SEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 CSLPMVATSNGE-LSDMDISDDEFSSNEILSSRASEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 254 EHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPH 313
           EHSHAHLSAQFKQHSIERVYISLTCGV PSTAGRIEVPICRDPNNRIRM+AV  TN NPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMSAVLRTNKNPH 300

Query: 314 AKHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
           AK+AASRYKV+EILAQGGSSLVEWRLETGRTHQ
Sbjct: 301 AKYAASRYKVIEILAQGGSSLVEWRLETGRTHQ 331

[Close]

BLAST of HG10004755 vs. TAIR 10
Match: AT1G76050.2 (Pseudouridine synthase family protein )

HSP 1 Score: 384.8 bits (987), Expect = 8.7e-107
Identity = 197/279 (70.61%), Postives = 222/279 (79.57%), Query Frame = 0


Query: 70  RANYAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHN 129
           R N AG+R+EE VD   GK+RLDSWIS RING+SRARVQSSIR GLV+VNGR++DKVSHN
Sbjct: 63  RVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHN 122

Query: 130 VKAGDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNA 189
           VK+GD +NCTISELQPL+AE EDI +DIVYED+HVLVVNKPAHMVVHPAPGN TGTLVN 
Sbjct: 123 VKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNG 182

Query: 190 ILNHCSLPMVATSNEEHPSDMD---ISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGL 249
           IL+HCSLP V  SN E   D D    SDDE  +    S    A +RPGIVHRLDKGT+GL
Sbjct: 183 ILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYA--ASVRPGIVHRLDKGTTGL 242

Query: 250 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSG 309
           LVVAKDEHSHAHL+ QFK H+IERVY+SLT GV     GRIE+PI RD +NRIRM A+ G
Sbjct: 243 LVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPG 302

Query: 310 TNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQ 346
                 A+HAASRYKV+E  A GGS+LVEWRLETGRTHQ
Sbjct: 303 GVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 339

[Close]

BLAST of HG10004755 vs. TAIR 10
Match: AT1G76050.1 (Pseudouridine synthase family protein )

HSP 1 Score: 340.5 bits (872), Expect = 1.9e-93
Identity = 176/253 (69.57%), Postives = 199/253 (78.66%), Query Frame = 0


Query: 70  RANYAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHN 129
           R N AG+R+EE VD   GK+RLDSWIS RING+SRARVQSSIR GLV+VNGR++DKVSHN
Sbjct: 63  RVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHN 122

Query: 130 VKAGDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNA 189
           VK+GD +NCTISELQPL+AE EDI +DIVYED+HVLVVNKPAHMVVHPAPGN TGTLVN 
Sbjct: 123 VKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNG 182

Query: 190 ILNHCSLPMVATSNEEHPSDMD---ISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGL 249
           IL+HCSLP V  SN E   D D    SDDE  +    S    A +RPGIVHRLDKGT+GL
Sbjct: 183 ILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYA--ASVRPGIVHRLDKGTTGL 242

Query: 250 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSG 309
           LVVAKDEHSHAHL+ QFK H+IERVY+SLT GV     GRIE+PI RD +NRIRM A+ G
Sbjct: 243 LVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPG 302

Query: 310 TNNNPHAKHAASR 320
                 A+HAASR
Sbjct: 303 GVRGGRARHAASR 313

[Close]

BLAST of HG10004755 vs. TAIR 10
Match: AT3G19440.1 (Pseudouridine synthase family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-07
Identity = 54/206 (26.21%), Postives = 90/206 (43.69%), Query Frame = 0


Query: 157 IVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPSDMDISDDE 216
           ++Y+D  ++V+NKP  + V    G  T                             S DE
Sbjct: 185 VLYKDPAIIVLNKPHGLAVQGGSGIKT-----------------------------SIDE 244

Query: 217 FSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ----------- 276
            ++  +    SE+   P +VHRLD+  SGLLV+A+ + +   L + F++           
Sbjct: 245 LAASCLKFDKSES---PRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVK 304

Query: 277 ---HSIERVYISLTCGVSPSTAGRIEVPICR---DPNNRIRMTAVSGTNNNPHAKHAASR 336
               S++R Y++L  G  P   G+I  P+ +   D     R+T V+        +HA + 
Sbjct: 305 KNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERIT-VNDNGELVSTQHAITE 356

Query: 337 YKVMEILAQGGSSLVEWRLETGRTHQ 346
           Y+V+E  +  G + +E R  TGR HQ
Sbjct: 365 YRVIE-SSPHGYTWLELRPLTGRKHQ 356

[Close]

BLAST of HG10004755 vs. TAIR 10
Match: AT5G51140.1 (Pseudouridine synthase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-07
Identity = 68/278 (24.46%), Postives = 108/278 (38.85%), Query Frame = 0


Query: 87  GKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPL 146
           GK  +D +      G  R     ++++G + V+G I+  VS+ VK+   I   +   +P 
Sbjct: 73  GKTIVDLFAD-EFKGRPRDYYVGAVKSGRIKVDGEIV-PVSYIVKSSQKITHFLHRHEP- 132

Query: 147 RAEPEDI-DVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEE 206
              P  I DV I++++  V+ V KPA + VHP       T+V  +            + E
Sbjct: 133 ---PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL------------DAE 192

Query: 207 HPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ 266
           H                        + P  +HRLD+  SGLL++A+          Q + 
Sbjct: 193 H--------------------DLGTLFP--IHRLDRLVSGLLIIARTAAKADFFRQQIEG 252

Query: 267 HSIERVYISLTCGVSPSTAGRIEVPI-CRDPNNRIRMTAVSGTNNNPHAKHAASRYKVME 326
             +++ YI+   GV P     ++  I       R      + + ++   K   +  K   
Sbjct: 253 GMVKKRYIAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTR 304

Query: 327 ILAQGGSSLVEWRLETGRTHQPSLNPPPRVQLNIDGKP 363
           I   G  SLV     TGRTHQ       RV L   G P
Sbjct: 313 IDTNGTHSLVSCEPVTGRTHQ------IRVHLQYTGHP 304

[Close]

BLAST of HG10004755 vs. TAIR 10
Match: AT5G51140.2 (Pseudouridine synthase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-07
Identity = 68/278 (24.46%), Postives = 108/278 (38.85%), Query Frame = 0


Query: 87  GKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPL 146
           GK  +D +      G  R     ++++G + V+G I+  VS+ VK+   I   +   +P 
Sbjct: 73  GKTIVDLFAD-EFKGRPRDYYVGAVKSGRIKVDGEIV-PVSYIVKSSQKITHFLHRHEP- 132

Query: 147 RAEPEDI-DVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEE 206
              P  I DV I++++  V+ V KPA + VHP       T+V  +            + E
Sbjct: 133 ---PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL------------DAE 192

Query: 207 HPSDMDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ 266
           H                        + P  +HRLD+  SGLL++A+          Q + 
Sbjct: 193 H--------------------DLGTLFP--IHRLDRLVSGLLIIARTAAKADFFRQQIEG 252

Query: 267 HSIERVYISLTCGVSPSTAGRIEVPI-CRDPNNRIRMTAVSGTNNNPHAKHAASRYKVME 326
             +++ YI+   GV P     ++  I       R      + + ++   K   +  K   
Sbjct: 253 GMVKKRYIAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTR 304

Query: 327 ILAQGGSSLVEWRLETGRTHQPSLNPPPRVQLNIDGKP 363
           I   G  SLV     TGRTHQ       RV L   G P
Sbjct: 313 IDTNGTHSLVSCEPVTGRTHQ------IRVHLQYTGHP 304

The following BLAST results are available for this feature:

BLAST of HG10004755 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886062.1	3.1e-175	94.58	RNA pseudouridine synthase 2, chloroplastic isoform X4 [Benincasa hispida]	[more]
XP_038886060.1	1.5e-172	91.28	RNA pseudouridine synthase 2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_038886059.1	3.3e-172	90.49	RNA pseudouridine synthase 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038886063.1	3.3e-172	90.49	RNA pseudouridine synthase 2, chloroplastic isoform X5 [Benincasa hispida]	[more]
XP_038886061.1	3.3e-172	90.49	RNA pseudouridine synthase 2, chloroplastic isoform X3 [Benincasa hispida]	[more]

BLAST of HG10004755 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ECD0	1.2e-105	70.61	RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q5Z8P2	1.5e-100	59.00	RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]
P50513	3.1e-40	41.63	Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mob...	[more]
Q45480	7.1e-37	37.89	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168...	[more]
P74346	3.5e-36	33.22	Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain ...	[more]

BLAST of HG10004755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCE4	4.3e-170	90.96	Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1	[more]
A0A5A7VHA3	4.3e-170	90.96	Pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A1S3BD56	4.3e-170	90.96	Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1	[more]
A0A0A0LKD7	2.2e-166	89.49	Pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G346580 PE=3 SV=1	[more]
A0A6J1CMS3	1.8e-160	88.59	Pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111012905 PE=3 SV=1	[more]

BLAST of HG10004755 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76050.2	8.7e-107	70.61	Pseudouridine synthase family protein	[more]
AT1G76050.1	1.9e-93	69.57	Pseudouridine synthase family protein	[more]
AT3G19440.1	1.6e-07	26.21	Pseudouridine synthase family protein	[more]
AT5G51140.1	7.8e-07	24.46	Pseudouridine synthase family protein	[more]
AT5G51140.2	7.8e-07	24.46	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 89..151 e-value: 1.2E-4 score: 31.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 89..136 e-value: 7.8E-9 score: 35.1
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 89..168 e-value: 6.86094E-12 score: 58.8002
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 74..144 e-value: 5.7E-15 score: 56.5
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 146..358 e-value: 1.3E-46 score: 160.9
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 87..345
None	No IPR available	PANTHER	PTHR21600:SF57	RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D	coord: 87..345
None	No IPR available	PROSITE	PS50889	S4	coord: 89..162 score: 11.757991
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 57..190
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 163..345 e-value: 1.1E-25 score: 90.6
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 164..345 e-value: 2.21838E-47 score: 158.655
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site	PROSITE	PS01129	PSI_RLU	coord: 236..250
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 149..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004755.1	HG10004755.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding