HG10004730 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004730
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 19892239 .. 19892508 (-)
RNA-Seq Expression	HG10004730
Synteny	HG10004730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGGTTAGCAACCCAAAAACAACCTCCAAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGA

mRNA sequence

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGGTTAGCAACCCAAAAACAACCTCCAAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGA

Coding sequence (CDS)

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGGTTAGCAACCCAAAAACAACCTCCAAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGA

Protein sequence

MANEQRQSTGPWILEAIPFMIVLLIATHIFALVLPNSNFSSFLSFVSKLYTLMFAHCHLISVGILDLQVSNPKTTSKEEGTLSYCMIRS

Homology

[Close]

BLAST of HG10004730 vs. NCBI nr
Match: KAA0064871.1 (uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 40/88 (45.45%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALVLPNSNFSSFLSFVSKLYTLMFAHCHLI 60
          MANEQRQS+ PW LE +PF+I++LIA+HI AL                            
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILAL---------------------------- 52

Query: 61 SVGILDLQVSNPKTTSKEEGTLSYCMIR 89
                  VSN KTTSKEEGTLSYC IR
Sbjct: 61 --------VSNSKTTSKEEGTLSYCTIR 52

[Close]

BLAST of HG10004730 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALV 34
          MANE+R STGPWILEA+PF++VLLIA H+FALV
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALV 33

[Close]

BLAST of HG10004730 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALV 34
          MANEQR S GPW LEAIP +IVLLIA H+FALV
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33

[Close]

BLAST of HG10004730 vs. ExPASy TrEMBL
Match: A0A5A7VGM0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001840 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 40/88 (45.45%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALVLPNSNFSSFLSFVSKLYTLMFAHCHLI 60
          MANEQRQS+ PW LE +PF+I++LIA+HI AL                            
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILAL---------------------------- 52

Query: 61 SVGILDLQVSNPKTTSKEEGTLSYCMIR 89
                  VSN KTTSKEEGTLSYC IR
Sbjct: 61 --------VSNSKTTSKEEGTLSYCTIR 52

[Close]

BLAST of HG10004730 vs. ExPASy TrEMBL
Match: A0A7N2KTP9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MANEQRQST-GPWILEAIPFMIVLLIATHIFALVLPNSNFSSFLSFVSKLYTLMFAHCHL 60
          M NEQ  S+  PW+L+A+PF++VLLIA H+ ALV      S  LS  +++    F   H 
Sbjct: 1  MTNEQHSSSPRPWLLDAVPFVVVLLIAAHVLALVHSQKTTSFSLSNSNQISD--FFSLHT 60

Query: 61 ISVGILDLQVSNPKTTSKEEGTL 83
          +S G+LDLQ+S+ +T S+E+GTL
Sbjct: 61 LS-GLLDLQISHRETASEEKGTL 80

The following BLAST results are available for this feature:

BLAST of HG10004730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064871.1	5.5e-08	45.45	uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa]	[more]
KAG7029467.1	3.3e-05	78.79	hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7020426.1	2.8e-04	78.79	hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10004730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGM0	2.6e-08	45.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A7N2KTP9	5.0e-07	45.78	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of HG10004730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004730.1	HG10004730.1	mRNA