HG10004712 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004712
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Poly(A)-specific ribonuclease
Location	Chr08: 19695591 .. 19696415 (-)
RNA-Seq Expression	HG10004712
Synteny	HG10004712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

mRNA sequence

ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

Coding sequence (CDS)

ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

Protein sequence

MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN

Homology

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BLAST of HG10004712 vs. NCBI nr
Match: XP_038885551.1 (probable CCR4-associated factor 1 homolog 7 [Benincasa hispida])

HSP 1 Score: 569.3 bits (1466), Expect = 1.8e-158
Identity = 270/274 (98.54%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL
Sbjct: 61  NYRTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN+DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNNDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGVDNGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVDNGQRTN 274

[Close]

BLAST of HG10004712 vs. NCBI nr
Match: XP_008445259.1 (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 561.6 bits (1446), Expect = 3.7e-156
Identity = 266/274 (97.08%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

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BLAST of HG10004712 vs. NCBI nr
Match: KAA0064893.1 (putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 561.6 bits (1446), Expect = 3.7e-156
Identity = 266/274 (97.08%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 61  MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 120

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 121 NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 180

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 181 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 240

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 241 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 300

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 301 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 334

[Close]

BLAST of HG10004712 vs. NCBI nr
Match: XP_004138704.1 (probable CCR4-associated factor 1 homolog 7 [Cucumis sativus] >KGN62988.1 hypothetical protein Csa_022642 [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 8.3e-156
Identity = 265/274 (96.72%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. NCBI nr
Match: XP_022996818.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996819.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima])

HSP 1 Score: 547.0 bits (1408), Expect = 9.4e-152
Identity = 260/274 (94.89%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGN PTCGTD FCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNFPTCGTDNFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
            TFRKLRNTFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 3.5e-125
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 120
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of HG10004712 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 3.0e-124
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of HG10004712 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.3e-122
Identity = 204/268 (76.12%), Postives = 235/268 (87.69%), Query Frame = 0


Query: 6   KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 65
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 125
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]

BLAST of HG10004712 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.2e-98
Identity = 169/264 (64.02%), Postives = 208/264 (78.79%), Query Frame = 0


Query: 8   DSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D+F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELL 127
           Y TLK NV MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN 187
           R+  ID +KNNE G+D  RF ELLM SGVVLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 DQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 247
           + + FF+ +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of HG10004712 vs. ExPASy Swiss-Prot
Match: Q3ZC01 (CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-80
Identity = 146/260 (56.15%), Postives = 190/260 (73.08%), Query Frame = 0


Query: 9   SIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDN 68
           S +I EVW  NL+EE   IR+++ ++NY+AMDTEFPGVV RP+G F++  DY Y+ L+ N
Sbjct: 9   SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68

Query: 69  VEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDF 128
           V++LK+IQLGLTF +E G  P  GT     WQFNF+ FN+  D++A DSIELL   GI F
Sbjct: 69  VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 128

Query: 129 QKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFE 188
           +K+ EEGI+   F ELLM+SGVVL + V W++FHSGYDFGYL+K+LT   LP ++  FFE
Sbjct: 129 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 188

Query: 189 LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRN 248
           ++ ++FPV+YD+K+LMK C +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R 
Sbjct: 189 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 248

Query: 249 TFFNGSIQ--KYAGVLYGLG 267
            FF   I   KY G LYGLG
Sbjct: 249 MFFEDHIDDAKYCGHLYGLG 263

[Close]

BLAST of HG10004712 vs. ExPASy TrEMBL
Match: A0A5A7V9Q6 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002070 PE=3 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 1.8e-156
Identity = 266/274 (97.08%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 61  MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 120

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 121 NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 180

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 181 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 240

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 241 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 300

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 301 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 334

[Close]

BLAST of HG10004712 vs. ExPASy TrEMBL
Match: A0A1S3BD45 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 1.8e-156
Identity = 266/274 (97.08%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. ExPASy TrEMBL
Match: A0A0A0LMH2 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.0e-156
Identity = 265/274 (96.72%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. ExPASy TrEMBL
Match: A0A6J1KC39 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 4.6e-152
Identity = 260/274 (94.89%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGN PTCGTD FCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNFPTCGTDNFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
            TFRKLRNTFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. ExPASy TrEMBL
Match: A0A6J1HCG0 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.7e-151
Identity = 260/274 (94.89%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI +DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
            TFRKLRNTFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of HG10004712 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 449.1 bits (1154), Expect = 2.5e-126
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 120
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of HG10004712 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-125
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of HG10004712 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-125
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of HG10004712 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.0e-124
Identity = 201/269 (74.72%), Postives = 235/269 (87.36%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDN 270
           CTFRKL+  FF G + KY+GVLYGLGV+N
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVEN 269

[Close]

BLAST of HG10004712 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 440.7 bits (1132), Expect = 8.9e-124
Identity = 204/268 (76.12%), Postives = 235/268 (87.69%), Query Frame = 0


Query: 6   KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 65
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 125
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

The following BLAST results are available for this feature:

BLAST of HG10004712 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885551.1	1.8e-158	98.54	probable CCR4-associated factor 1 homolog 7 [Benincasa hispida]	[more]
XP_008445259.1	3.7e-156	97.08	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo]	[more]
KAA0064893.1	3.7e-156	97.08	putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa]	[more]
XP_004138704.1	8.3e-156	96.72	probable CCR4-associated factor 1 homolog 7 [Cucumis sativus] >KGN62988.1 hypoth...	[more]
XP_022996818.1	9.4e-152	94.89	probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996819.1 p...	[more]

BLAST of HG10004712 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKZ2	3.5e-125	76.10	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	3.0e-124	74.91	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	1.3e-122	76.12	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9S9P2	8.2e-98	64.02	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q3ZC01	1.5e-80	56.15	CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=...	[more]

BLAST of HG10004712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9Q6	1.8e-156	97.08	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BD45	1.8e-156	97.08	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1	[more]
A0A0A0LMH2	4.0e-156	96.72	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV...	[more]
A0A6J1KC39	4.6e-152	94.89	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 S...	[more]
A0A6J1HCG0	1.7e-151	94.89	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3...	[more]

BLAST of HG10004712 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32070.1	2.5e-126	76.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.1e-125	74.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.1e-125	74.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	4.0e-124	74.72	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	8.9e-124	76.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..269 e-value: 2.0E-99 score: 334.1
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 161..243 e-value: 1.3E-5 score: 24.7
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 15..136 e-value: 2.2E-11 score: 43.6
None	No IPR available	PANTHER	PTHR10797:SF68	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED	coord: 1..274
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 1..274
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004712.1	HG10004712.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity