HG10004709 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004709
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	PPPDE domain-containing protein
Location	Chr08: 19666471 .. 19667310 (-)
RNA-Seq Expression	HG10004709
Synteny	HG10004709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTGTAGAATCGTCAAAGTGTCTAGCAGGAAAAAGATTGGCGCGGTTCCGGTTTATCTGAATGTGTACGATTTAACGCCAATTAATGGATATGCTTATTGGCTTGGCCTCGGTGTCTACCATTCCGGCGTACAAGGTGAGCAACGATTCTGTCCTTTTTTTGCTTTCCGCTTTTTTCTCGTCTTCTGGTCTGTTTGTTTCCTGAAGAAAGTGACTCCAAAAGTAGAGAGTTGGATTATAATTGTTTTGCTGTTAGAATAGTATGAATCTTCGTTGAATGATTTACTAATTTCGTAATTCATGAACATTTAAGCAGATTTTAGGTCTTGAGAATCTGTTTTTGGTACAGAGTGAGTGCGTAACGAACTAATTTACTTTGATTCCTTCAATCTAACAAAATTGATTTGAGAAATCGGAATCACTTTTTCGATTTTAGAAAGTGGAGCATGTGAATCGATTATTTGTTTCCTCTTTGAGTGAAAAATGGATTTAGGTGATTTAGGTTGAAATTTGGTTGCAGTTCATGGAGTTGAGTATGCATTTGGAGCTCATGAGAATGCGACTACAGGAATATTCGAAGTGGAACCAAAGCAGTGTCCAGGATTCACATACAGAAAATCAATTTTAATAGGAAGAACGAATCTCAGTCCTAGAGAGATTCGATCATTCATGGAGAAACTGGCTGAAGAGTATTCTGGAAACACCTATCATCTCATCACCAAGAACTGTAACCATTTTTGCAACGATGTTTGTCTCAGATTGACAGGGAAACCAATCCCCAGATGGGTTAATCGTCTAGCTCGACTCGGTAACACACTTCATCTTTTCATGATTTGA

mRNA sequence

ATGTTGTGTAGAATCGTCAAAGTGTCTAGCAGGAAAAAGATTGGCGCGGTTCCGGTTTATCTGAATGTGTACGATTTAACGCCAATTAATGGATATGCTTATTGGCTTGGCCTCGGTGTCTACCATTCCGGCGTACAAGTTCATGGAGTTGAGTATGCATTTGGAGCTCATGAGAATGCGACTACAGGAATATTCGAAGTGGAACCAAAGCAGTGTCCAGGATTCACATACAGAAAATCAATTTTAATAGGAAGAACGAATCTCAGTCCTAGAGAGATTCGATCATTCATGGAGAAACTGGCTGAAGAGTATTCTGGAAACACCTATCATCTCATCACCAAGAACTGTAACCATTTTTGCAACGATGTTTGTCTCAGATTGACAGGGAAACCAATCCCCAGATGGGTTAATCGTCTAGCTCGACTCGGTAACACACTTCATCTTTTCATGATTTGA

Coding sequence (CDS)

ATGTTGTGTAGAATCGTCAAAGTGTCTAGCAGGAAAAAGATTGGCGCGGTTCCGGTTTATCTGAATGTGTACGATTTAACGCCAATTAATGGATATGCTTATTGGCTTGGCCTCGGTGTCTACCATTCCGGCGTACAAGTTCATGGAGTTGAGTATGCATTTGGAGCTCATGAGAATGCGACTACAGGAATATTCGAAGTGGAACCAAAGCAGTGTCCAGGATTCACATACAGAAAATCAATTTTAATAGGAAGAACGAATCTCAGTCCTAGAGAGATTCGATCATTCATGGAGAAACTGGCTGAAGAGTATTCTGGAAACACCTATCATCTCATCACCAAGAACTGTAACCATTTTTGCAACGATGTTTGTCTCAGATTGACAGGGAAACCAATCCCCAGATGGGTTAATCGTCTAGCTCGACTCGGTAACACACTTCATCTTTTCATGATTTGA

Protein sequence

MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIPRWVNRLARLGNTLHLFMI

Homology

[Close]

BLAST of HG10004709 vs. NCBI nr
Match: XP_038885545.1 (deSI-like protein At4g17486 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-78
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVCLRLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCLRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. NCBI nr
Match: XP_022132302.1 (deSI-like protein At4g17486 [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-77
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHG+EYAFGAHE A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGIEYAFGAHEQA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           TTGIFEVEPKQCPGFTYRKSILIGRTNLSP+EIRSFMEKLAE+YSGNTYHLITKNCNHFC
Sbjct: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPKEIRSFMEKLAEQYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVCLRLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCLRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. NCBI nr
Match: XP_008445255.1 (PREDICTED: deSI-like protein At4g17486 [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCVRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. NCBI nr
Match: KAA0064896.1 (deSI-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCVRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. NCBI nr
Match: XP_004138707.1 (deSI-like protein At4g17486 [Cucumis sativus] >KGN62984.1 hypothetical protein Csa_022110 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.7e-76
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VS+RKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSNRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCIRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. ExPASy Swiss-Prot
Match: Q93VG8 (DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 79/127 (62.20%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 18  PVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQCPGFTY 77
           PVYLNVYDLTP+N Y YW G+G++HSG++ H +EY +GAHE  T+G++EVEP+ CPGF +
Sbjct: 27  PVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIF 86

Query: 78  RKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIPRWVN 137
           R+S+L+G T++S  + RS+MEKL+ +Y G+TYHLI KNCNHF  +VCL+LTGKPIP W+N
Sbjct: 87  RRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWIN 146

Query: 138 RLARLGN 145
           RLAR+G+
Sbjct: 147 RLARVGS 153

[Close]

BLAST of HG10004709 vs. ExPASy Swiss-Prot
Match: Q5PQ09 (Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=desi2 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 18  PVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQC----P 77
           P+ LNVYD+  IN Y   LG+GV+HSG+QV+G E+A+G H    +G+FE+ P        
Sbjct: 5   PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGD 64

Query: 78  GFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIP 137
            F ++++I +G T+ +  +I   +E+L +EY GN YHL+ KNCNHF + +   L GK IP
Sbjct: 65  TFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 124

Query: 138 RWVNRLA 141
           RWVNRLA
Sbjct: 125 RWVNRLA 131

[Close]

BLAST of HG10004709 vs. ExPASy Swiss-Prot
Match: H2KZK4 (Desumoylating isopeptidase 1 homolog OS=Caenorhabditis elegans OX=6239 GN=F36D4.5 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-29
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 19  VYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQC----PG 78
           V LNVYD+  +N YA  +G+G++HSG++V GVEYA+G H    +G+FE  P+        
Sbjct: 32  VRLNVYDMYWLNDYASNIGVGIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQDAEELGET 91

Query: 79  FTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIPR 138
           F +++SI++G T  S  +IR  ++ L E++ G+ YHLI++NCNHF   +   LTGK IP 
Sbjct: 92  FKFKESIVVGETERSTSDIRKLIKSLGEDFRGDRYHLISRNCNHFSAVLARELTGKDIPG 151

Query: 139 WVNRLARLGNTL 147
           W+NRLA L  ++
Sbjct: 152 WINRLANLSGSI 163

[Close]

BLAST of HG10004709 vs. ExPASy Swiss-Prot
Match: Q6DC39 (Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=desi2 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.4e-28
Identity = 55/127 (43.31%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 18  PVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQC----P 77
           PV LNVYD+  IN +   LG+GV+HSG++++G E+A+G H    +GIFE+ P        
Sbjct: 5   PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGE 64

Query: 78  GFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIP 137
            F ++++I++G T+ +  ++   +E++ +EY GN YHL+ KNCNHF + +   L G+ IP
Sbjct: 65  TFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIP 124

Query: 138 RWVNRLA 141
           RWVNRLA
Sbjct: 125 RWVNRLA 131

[Close]

BLAST of HG10004709 vs. ExPASy Swiss-Prot
Match: Q5ZIV7 (Deubiquitinase DESI2 OS=Gallus gallus OX=9031 GN=DESI2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-27
Identity = 56/126 (44.44%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 19  VYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQC----PG 78
           V LNVYD+  +N Y   LG+GV+HSG++V+G E+A+G H    +GIFE+ P         
Sbjct: 6   VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 65

Query: 79  FTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIPR 138
           F +++++++G T+    +I   +E+L +E+ GN YHL+ KNCNHF + +   L GK IPR
Sbjct: 66  FKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125

Query: 139 WVNRLA 141
           WVNRLA
Sbjct: 126 WVNRLA 131

[Close]

BLAST of HG10004709 vs. ExPASy TrEMBL
Match: A0A6J1BTH1 (deSI-like protein At4g17486 OS=Momordica charantia OX=3673 GN=LOC111005186 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHG+EYAFGAHE A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGIEYAFGAHEQA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           TTGIFEVEPKQCPGFTYRKSILIGRTNLSP+EIRSFMEKLAE+YSGNTYHLITKNCNHFC
Sbjct: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPKEIRSFMEKLAEQYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVCLRLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCLRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. ExPASy TrEMBL
Match: A0A5A7VEZ3 (DeSI-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002110 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.7e-77
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCVRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. ExPASy TrEMBL
Match: A0A1S3BC80 (deSI-like protein At4g17486 OS=Cucumis melo OX=3656 GN=LOC103488341 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.7e-77
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCVRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. ExPASy TrEMBL
Match: A0A0A0LPQ8 (PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382570 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VS+RKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHE+A
Sbjct: 1   MLCRIVTVSNRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHA 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK CPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC
Sbjct: 61  STGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVC+RLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCIRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. ExPASy TrEMBL
Match: A0A6J1GJJ4 (deSI-like protein At4g17486 OS=Cucurbita moschata OX=3662 GN=LOC111454442 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCRIV VSS+KK GAVPVYLNVYDLTPINGYAYW GLGVYHSGVQVHGVEYAFGAHE++
Sbjct: 1   MLCRIVTVSSKKKTGAVPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYAFGAHEHS 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLI +NCNHFC
Sbjct: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLIMRNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           NDVCLRLTGKPIPRWVNRLARLG
Sbjct: 121 NDVCLRLTGKPIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. TAIR 10
Match: AT5G25170.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-68
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MLCRIVKVSSR-KKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEN 60
           MLCR+V V+ R KK G+VPVYLNVYDLTPINGYAYWLGLG+YHSGV+VHGVEY FGAH++
Sbjct: 1   MLCRMVVVTGRKKKPGSVPVYLNVYDLTPINGYAYWLGLGIYHSGVEVHGVEYGFGAHDH 60

Query: 61  ATTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHF 120
           +TTGIFEVEPKQCPGFT+RKSILIGRT+L P  +R FMEKLAEEYSGN+YHLITKNCNHF
Sbjct: 61  STTGIFEVEPKQCPGFTFRKSILIGRTDLDPENVRVFMEKLAEEYSGNSYHLITKNCNHF 120

Query: 121 CNDVCLRLTGKPIPRWVNRLARLG 144
           CNDVC++LT + IP WVNRLAR G
Sbjct: 121 CNDVCVQLTRRSIPSWVNRLARFG 144

[Close]

BLAST of HG10004709 vs. TAIR 10
Match: AT2G25190.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 241.1 bits (614), Expect = 5.7e-64
Identity = 107/143 (74.83%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLC    V  +K+ G+VPVYLNVYDLTP+N Y YWLGLGV+HSGV+VHGVEYAFGAHE++
Sbjct: 1   MLCFKGSVKRKKQSGSVPVYLNVYDLTPMNAYGYWLGLGVFHSGVEVHGVEYAFGAHESS 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPK+CPGFT+RKSIL+G+T+L  +E+R FMEKLAEEY GN YHLIT+NCNHFC
Sbjct: 61  STGIFEVEPKKCPGFTFRKSILVGKTDLVAKEVRVFMEKLAEEYQGNKYHLITRNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           N+VCL+L  K IPRWVNRLARLG
Sbjct: 121 NEVCLKLAQKSIPRWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. TAIR 10
Match: AT4G31980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). )

HSP 1 Score: 232.3 bits (591), Expect = 2.6e-61
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           M CR V V  +K  G VPVYLNVYDLTP+N Y YWLG+G+YHSG++VHGVEY +GAHE +
Sbjct: 1   MFCRNVSVRRKKNSGTVPVYLNVYDLTPMNVYGYWLGIGIYHSGLEVHGVEYGYGAHEKS 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           ++GIFEVEPK+CPGFT+RKSIL+G T +  +E+RSFMEKL+EEY GN YHLIT+NCNHFC
Sbjct: 61  SSGIFEVEPKKCPGFTFRKSILVGETEMKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           N V L+LT K IP WVNRLARLG
Sbjct: 121 NHVSLKLTHKSIPSWVNRLARLG 143

[Close]

BLAST of HG10004709 vs. TAIR 10
Match: AT1G80690.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-60
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MLCRIVKVSSRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENA 60
           MLCR  K SS    G VPVYLNVYDLTPINGYAYWLGLGVYHSGV+VHG+EYA+GAHE  
Sbjct: 1   MLCR--KNSSLVDRGNVPVYLNVYDLTPINGYAYWLGLGVYHSGVEVHGIEYAYGAHEYP 60

Query: 61  TTGIFEVEPKQCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFE EPKQC GFT+RKSILIG+T+L P E+R+ ME+LA+ Y G++Y+LITKNCNHFC
Sbjct: 61  STGIFEGEPKQCEGFTFRKSILIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFC 120

Query: 121 NDVCLRLTGKPIPRWVNRLARLG 144
           ++ C++LTG PIP WVNRLAR+G
Sbjct: 121 DETCIKLTGNPIPSWVNRLARIG 141

[Close]

BLAST of HG10004709 vs. TAIR 10
Match: AT1G47740.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-57
Identity = 93/130 (71.54%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 15  GAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHENATTGIFEVEPKQCPG 74
           G  PVYLNVYDLTPINGY YW GLG++HSGV+VHGVEYAFGAH+ AT+G+FEVEP+QCPG
Sbjct: 67  GRAPVYLNVYDLTPINGYIYWAGLGIFHSGVEVHGVEYAFGAHDYATSGVFEVEPRQCPG 126

Query: 75  FTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCLRLTGKPIPR 134
           F ++KSI IG TNL+P ++R FME +A  Y GN YHLI KNCNHFC DVC +LTGK IP+
Sbjct: 127 FKFKKSIFIGTTNLNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPK 186

Query: 135 WVNRLARLGN 145
           WVNRLA++G+
Sbjct: 187 WVNRLAQIGS 196

The following BLAST results are available for this feature:

BLAST of HG10004709 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885545.1	6.5e-78	98.60	deSI-like protein At4g17486 [Benincasa hispida]	[more]
XP_022132302.1	5.5e-77	96.50	deSI-like protein At4g17486 [Momordica charantia]	[more]
XP_008445255.1	1.6e-76	96.50	PREDICTED: deSI-like protein At4g17486 [Cucumis melo]	[more]
KAA0064896.1	1.6e-76	96.50	deSI-like protein [Cucumis melo var. makuwa]	[more]
XP_004138707.1	2.7e-76	95.80	deSI-like protein At4g17486 [Cucumis sativus] >KGN62984.1 hypothetical protein C...	[more]

BLAST of HG10004709 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VG8	1.2e-50	62.20	DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV...	[more]
Q5PQ09	4.4e-29	46.46	Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=desi2 PE=2 SV=1	[more]
H2KZK4	5.8e-29	43.94	Desumoylating isopeptidase 1 homolog OS=Caenorhabditis elegans OX=6239 GN=F36D4....	[more]
Q6DC39	8.4e-28	43.31	Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=desi2 PE=2 SV=1	[more]
Q5ZIV7	4.2e-27	44.44	Deubiquitinase DESI2 OS=Gallus gallus OX=9031 GN=DESI2 PE=2 SV=1	[more]

BLAST of HG10004709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BTH1	2.7e-77	96.50	deSI-like protein At4g17486 OS=Momordica charantia OX=3673 GN=LOC111005186 PE=3 ...	[more]
A0A5A7VEZ3	7.7e-77	96.50	DeSI-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002...	[more]
A0A1S3BC80	7.7e-77	96.50	deSI-like protein At4g17486 OS=Cucumis melo OX=3656 GN=LOC103488341 PE=3 SV=1	[more]
A0A0A0LPQ8	1.3e-76	95.80	PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382570 PE=3 ...	[more]
A0A6J1GJJ4	1.9e-75	94.41	deSI-like protein At4g17486 OS=Cucurbita moschata OX=3662 GN=LOC111454442 PE=3 S...	[more]

BLAST of HG10004709 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25170.1	2.2e-68	80.56	PPPDE putative thiol peptidase family protein	[more]
AT2G25190.1	5.7e-64	74.83	PPPDE putative thiol peptidase family protein	[more]
AT4G31980.1	2.6e-61	70.63	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247,...	[more]
AT1G80690.1	2.2e-60	72.73	PPPDE putative thiol peptidase family protein	[more]
AT1G47740.1	1.4e-57	71.54	PPPDE putative thiol peptidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008580	PPPDE peptidase domain	SMART	SM01179	DUF862_2a	coord: 17..150 e-value: 2.5E-56 score: 203.1
IPR008580	PPPDE peptidase domain	PFAM	PF05903	Peptidase_C97	coord: 18..144 e-value: 1.3E-49 score: 168.0
IPR008580	PPPDE peptidase domain	PANTHER	PTHR12378	DESUMOYLATING ISOPEPTIDASE	coord: 5..144
IPR008580	PPPDE peptidase domain	PROSITE	PS51858	PPPDE	coord: 17..151 score: 61.911713
IPR042266	PPPDE peptidase domain superfamily	GENE3D	3.90.1720.30	PPPDE domains	coord: 14..150 e-value: 9.7E-49 score: 167.0
None	No IPR available	PANTHER	PTHR12378:SF17	OS02G0788133 PROTEIN	coord: 5..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004709.1	HG10004709.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
molecular_function	GO:0101005	deubiquitinase activity
molecular_function	GO:0008233	peptidase activity