HG10004667 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004667
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr08: 19387562 .. 19390861 (+)
RNA-Seq Expression	HG10004667
Synteny	HG10004667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGCACCATTTAAATTTAAAGAAAAATTATATGAAGGTATACTAGAGGGTAATCGGGTCAACTCGAAAAGGACAAAGGAGTTACTAGAAGAATGGTGTTTGTGGGTATGTAAGAGTCGGTCTAGATAATATAGTTTGTCAAACTTGCACCTATCGATAAATGATGGAATTCTTGATGATAATACAAGATATTGTCAAAAGCTAGTGTATCAGATATCATGATATCAATTTGAACCTAACTTAATTAATGAAGTTATATGTCTTAGAGATTGGAAGGATTAACAGCTCAATTTGACCTCTTTAGAAAATAATTTAGGAGTTTTTTAAAACATTGATTAAAAAAAATAGATAAGAAAGTCAGACATTTAGGGGTGGGAAGGGTGTTTGTAGGTCTAATTTTCAAAATCTAAAAACCAAAAACCAAATGGTTACTAAACGGGGTTGAAACATTTCAAAACTTATGAACTAAATTAAAATCCAACTCAAAACTTAAATATTGAAAGTGCAAAGGATAAAAAAGATAGGTTAACACTAACTGGGTTGATTTGTTTGTTTGTATCTAAGTTTTCAAAAATAAAAACCAAGTTTTAAAAATTAAAAAATTGTTTTAGAAATTTTTTTTGGTTTTCGAAACTTGGTTAAAAAATTAAATATGTATGGAAAAAAAAGATGAAATATATGTATGGAAAAAAGGATGAAATATATGCTAACAAATGTATTAAAAAAAGGGGGTAATTAATTGATTTTTGGTTTTTAATTTTTAATTTTTAAAAATTAAACTCATAAACACTCATACTCATTTGATAACAAATTCATTTTTTAAAAATTGTGTTTGTTTTCTCACAATGTCTTACTCATGGTTTTTATATTTTCAATATTTGAATTCTTAGTCAATTTTCAAAATAAAAAACAAGTTTTTGAAAATTACTTTTCTTTGTTTTCAAAATTTAGTATTGATTTTGAAAACACTTAGACAACAAAATCTATAAACCAATAGATGTAAGTGATGTTTATAGGTTTAATTTTAAAAAAAAAAATTAAAAAAAAATAATTACCAAATGGGATCTAAATTTTTTATTTTTTTATCTGTTTTAAAAAACCAAGCTTAACTAAAAACTAGAAAAATAGTTTTTAAAATGTGATTTTTGTTTTATAAATTTGGTTATGAATTCAATTTTTATATTTAAGAAAATTGTAAATTGTCATTAATAATTTGAGATAAAATAGACTTAATTAAAAAATATATATATATCTCAATTAGCATAAAAGTGTATTACTACAAAAAAAAAAAAAAAAAAAAAGATCCAACAAAAAAGAAGTTACCAATGGTCACGAACCATGTGTTCGTAACTTTTGAAAGGTCACCTTGTTCCGTTGGGAACAGCCGAAACTCTGTAAAACCCACCGAAACAGAGGGCGGTTCGAATCTACTGAATGAGGCTTTGCAGTAGAATTCGTATTTGCTTACTTGACTAAATGCAATCCCAATTCACAAAAACCAAGCTGTTACGTGTAATCAACAATGTTTCAGCTTCTACAACTAACCCTCGTGCAGCGGAGCAGAACTGTTTAGCCCTGCTTCAGGCCTGTAACGCGCTACCGAAGCTCACCCAAATCCATACTCACATTATCAAGTTGGGCCTCCACAACAACCCGCTCGTTCTCACCAAATTCGCCTCCATTTCTTCTTTTATTCATGCTACTGATTATGCTGCCTGTTTCTTGTTCTCTGCCGAAGCTGATACTCGGCTTTACGATGCGTTTCTTTTCAATACCCTCATCAGAGCCTATGCTCAAACTGGTCACTCGAAGGACAAAGCCTTGTCTTTGTACGGTATAATGCTTCACGATGGGATTTTGCCTAATAAGTTCACTTACCCATTTGTCTTGAAGGCTTGTGCTGGCCTTGAGGTTTTGAATTTGGGCCAATCGGTTCATGGGTCGGTGGTGAAGTTTGGGTTTGATCGTGATATTCATGTTCAGAACACTATGGTTCATATGTACTCCTGTTGCGCCGGTGGGATAAATTCTGCCCGGAAGTTGTTTGATGAAATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGTGGGTATGCTCGTGTAGGGCGTTCCACTGAAGCAGTGGCTTTATTTAGGGAGATGCAAATGGCGGAGGTTTGCCCAGATGAGATCACTATGGTTTCCATGCTTTCTGCTTGTACAGATTTGGGCGCCCTTGAACTTGGGAAGTGGATTGAAGCTTATATAGAGAGACAAGGAATTCAGAAACCAGTAGTGGTTACCAATGCACTTATTGATATGTTTGCAAAGTGTGGTGATATTAGTAAAGCATTGAAGTTATTTAGAACTATGAATGAGAAAACAATAGTTTCCTGGACTTCTGTTATTGTTGGCATGGCAATGCATGGCCGTGGTCAAGAGGCCATTTGTTTATTTGAGGAGATGATAGGTTCTGGTGTTCCTCCGGACGGCGTCGCCTTTATCGGCTTGCTTTCTGCCTGTAGCCATTCGGGACTAGTAGAAAGAGGTAGAGAATATTTCAGTTCTATGATGAAGAAATACAAACTTGTTCCTAAGATAGAACACTATGGATGCATGGTGGACATGTATTGCAGGACTGGACTTGTGAAGGAGGCTCTCGAGTTCGTACGTAACATGCCGATTGAGCCAAATCCAGTAATCTTACGAACACTAGTCAGTGCCTGCCGTGGTCACGGTGAATTCAAGCTTGGAGAAAAAATCACCAAACTGTTAATGAGACATGAGCCTTTGCATGAATCAAACTATGTCTTGCTCTCTAACATTTATGCAAAAATGCTTAGTTGGGAGAAGAAGACCAAAATTAGAGAGGTGATGGAAGTGAAAGGCATGAAAAAGGTTCCAGGGAGCACCATGATTGAGATTGATAACGAAATCTATGAATTTGTTGCTGGAGATAAGTCTCATAAACAGTTCAAAGAAATCTATGAAATGGTGGATGAGATGGGGAGAGAAATGAAGAAATCTGGATATCGTCCTTCGACATCGGAGGTTTTGCTCGATATCAACGAAGAGGACAAAGAAGATACTTTGAATAGACATAGTGAAAAACTAGCGATTGCATTTGGGCTTCTTAGTACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCAACGATTGCCACTCCGCTTCCAAGTTCATCTCTAAGATTTATGATCGCGAAATCATAATGAGAGACCGCAACCGGTTTCACCACTTCAAGTCTGGGCAGTGCTCATGTGGAGATTTCTGGTGA

mRNA sequence

ATGATTGAAGCACCATTTAAATTTAAAGAAAAATTATATGAAGGTATACTAGAGGGTAATCGGGTCAACTCGAAAAGGACAAAGGAGTTACTAGAAGAATGGTGTTTGTGGGTATCTTCTACAACTAACCCTCGTGCAGCGGAGCAGAACTGTTTAGCCCTGCTTCAGGCCTGTAACGCGCTACCGAAGCTCACCCAAATCCATACTCACATTATCAAGTTGGGCCTCCACAACAACCCGCTCGTTCTCACCAAATTCGCCTCCATTTCTTCTTTTATTCATGCTACTGATTATGCTGCCTGTTTCTTGTTCTCTGCCGAAGCTGATACTCGGCTTTACGATGCGTTTCTTTTCAATACCCTCATCAGAGCCTATGCTCAAACTGGTCACTCGAAGGACAAAGCCTTGTCTTTGTACGAAATCTATGAAATGGTGGATGAGATGGGGAGAGAAATGAAGAAATCTGGATATCGTCCTTCGACATCGGAGGTTTTGCTCGATATCAACGAAGAGGACAAAGAAGATACTTTGAATAGACATAGTGAAAAACTAGCGATTGCATTTGGGCTTCTTAGTACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCAACGATTGCCACTCCGCTTCCAAGTTCATCTCTAAGATTTATGATCGCGAAATCATAATGAGAGACCGCAACCGGTTTCACCACTTCAAGTCTGGGCAGTGCTCATGTGGAGATTTCTGGTGA

Coding sequence (CDS)

ATGATTGAAGCACCATTTAAATTTAAAGAAAAATTATATGAAGGTATACTAGAGGGTAATCGGGTCAACTCGAAAAGGACAAAGGAGTTACTAGAAGAATGGTGTTTGTGGGTATCTTCTACAACTAACCCTCGTGCAGCGGAGCAGAACTGTTTAGCCCTGCTTCAGGCCTGTAACGCGCTACCGAAGCTCACCCAAATCCATACTCACATTATCAAGTTGGGCCTCCACAACAACCCGCTCGTTCTCACCAAATTCGCCTCCATTTCTTCTTTTATTCATGCTACTGATTATGCTGCCTGTTTCTTGTTCTCTGCCGAAGCTGATACTCGGCTTTACGATGCGTTTCTTTTCAATACCCTCATCAGAGCCTATGCTCAAACTGGTCACTCGAAGGACAAAGCCTTGTCTTTGTACGAAATCTATGAAATGGTGGATGAGATGGGGAGAGAAATGAAGAAATCTGGATATCGTCCTTCGACATCGGAGGTTTTGCTCGATATCAACGAAGAGGACAAAGAAGATACTTTGAATAGACATAGTGAAAAACTAGCGATTGCATTTGGGCTTCTTAGTACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCAACGATTGCCACTCCGCTTCCAAGTTCATCTCTAAGATTTATGATCGCGAAATCATAATGAGAGACCGCAACCGGTTTCACCACTTCAAGTCTGGGCAGTGCTCATGTGGAGATTTCTGGTGA

Protein sequence

MIEAPFKFKEKLYEGILEGNRVNSKRTKELLEEWCLWVSSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDYAACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLYEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIRIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW

Homology

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BLAST of HG10004667 vs. NCBI nr
Match: XP_008445200.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 5.0e-67
Identity = 203/587 (34.58%), Postives = 207/587 (35.26%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SSTTNPRAAEQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIVKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDGILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQSVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

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BLAST of HG10004667 vs. NCBI nr
Match: KAA0064932.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 6.5e-67
Identity = 203/587 (34.58%), Postives = 207/587 (35.26%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SSTTNPRAAEQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDGILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQSVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

[Close]

BLAST of HG10004667 vs. NCBI nr
Match: XP_038884201.1 (pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida])

HSP 1 Score: 262.3 bits (669), Expect = 4.2e-66
Identity = 202/588 (34.35%), Postives = 207/588 (35.20%), Query Frame = 0


Query: 38  VSSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATD 97
           V+STTNPRAAEQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATD
Sbjct: 18  VASTTNPRAAEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATD 77

Query: 98  YAACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------ 157
           YAA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY                  
Sbjct: 78  YAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLYSIMLHDGILPNKFTYPFV 137

Query: 158 ------------------------------------------------------------ 217
                                                                       
Sbjct: 138 LKACAGLEVLNLGQSVHGSVVKFGFDRDIHVQNTMIHMYSCCAGGINSARKVFDEMPKSD 197

Query: 218 ------------------------------------------------------------ 249
                                                                       
Sbjct: 198 SVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSILSACTDLGALELGKWIEA 257

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BLAST of HG10004667 vs. NCBI nr
Match: XP_004138859.1 (pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus] >KGN62942.1 hypothetical protein Csa_021798 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-65
Identity = 201/587 (34.24%), Postives = 205/587 (34.92%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SST NPRA EQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

[Close]

BLAST of HG10004667 vs. NCBI nr
Match: XP_023537014.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023537016.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023537017.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023537018.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.5 bits (615), Expect = 7.7e-60
Identity = 192/588 (32.65%), Postives = 200/588 (34.01%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           +S +NPRAAEQNCLALLQACN+LPKLTQIH HI KLGLHNNPLVLTKFASISS I+ATDY
Sbjct: 15  ASRSNPRAAEQNCLALLQACNSLPKLTQIHAHIFKLGLHNNPLVLTKFASISSVINATDY 74

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRA+AQTGHSK +ALSLY                   
Sbjct: 75  AASFLFSAEADTRLYDAFLFNTLIRAFAQTGHSKARALSLYGIMLHDGILPNKFTYPFVL 134

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 135 KACAGLEVLSLGQSVHGSVVKFGFDHDVHVQNTMVHMYSCCSGGIIFARKVFDEMPKSDS 194

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 195 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSVLSACTDLGALELGKWIEAY 254

[Close]

BLAST of HG10004667 vs. ExPASy Swiss-Prot
Match: Q9SMZ2 (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-37
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 141 IYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIR 200
           IY  V +M R++K+ GY P T   L+D+ EE+KE  L  HSEKLA+AFGLLSTPP TPIR
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 201 IVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           ++KNLRVC DCH+A K+I+K+Y+REI++RD NRFH FK G CSCGD+W
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990

[Close]

BLAST of HG10004667 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 141 IYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIR 200
           IY M+DE+ + ++++GY   T EVLLD+NE+DKE  L+ HSEKLAIAF L+ T PGTP+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525

Query: 201 IVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           I+KNLR+C DCH   K ISK++ REI++RD NRFHHF+ G CSC DFW
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573

[Close]

BLAST of HG10004667 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 130 HSKDKALSLYEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFG 189
           HSK K     EIY M+ ++   +K  GY P+T+ VL D+ E +KE +L  HSE+LAIA+G
Sbjct: 519 HSKSK-----EIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYG 578

Query: 190 LLSTPPGTPIRIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           L+ST PG+P++I KNLRVC+DCH+ +K ISKI  R+I+MRDRNRFHHF  G CSCGDFW
Sbjct: 579 LISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632

[Close]

BLAST of HG10004667 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-35
Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 140 EIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPI 199
           EI  M+ E+  +++ +GYRP T++VLL++ EEDKE+ L+ HSEK+A AFGL+ST PG PI
Sbjct: 538 EINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPI 597

Query: 200 RIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           RIVKNLR+C DCHS+ K ISK+Y R+I +RDR RFHHF+ G CSC D+W
Sbjct: 598 RIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646

[Close]

BLAST of HG10004667 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.3e-35
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 140 EIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPI 199
           EIY M++EM   ++K+G+ P TSEVL ++ EE KE  L  HSEKLAIAFGL+ST PGT +
Sbjct: 633 EIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 692

Query: 200 RIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
            IVKNLRVC +CH A+K ISKIY REII RDR RFHHF+ G CSC D+W
Sbjct: 693 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of HG10004667 vs. ExPASy TrEMBL
Match: A0A1S3BC37 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucumis melo OX=3656 GN=LOC103488302 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.4e-67
Identity = 203/587 (34.58%), Postives = 207/587 (35.26%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SSTTNPRAAEQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIVKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDGILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQSVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

[Close]

BLAST of HG10004667 vs. ExPASy TrEMBL
Match: A0A5A7V9A4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002500 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 3.1e-67
Identity = 203/587 (34.58%), Postives = 207/587 (35.26%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SSTTNPRAAEQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDGILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQSVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

[Close]

BLAST of HG10004667 vs. ExPASy TrEMBL
Match: A0A0A0LQ71 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G381680 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 5.9e-66
Identity = 201/587 (34.24%), Postives = 205/587 (34.92%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           SST NPRA EQNCLALLQACNALPKLTQIHTHI+KLGLHNNPLVLTKFASISS IHATDY
Sbjct: 20  SSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDY 79

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKAL+LY                   
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVL 139

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 140 KACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDS 199

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259

[Close]

BLAST of HG10004667 vs. ExPASy TrEMBL
Match: A0A6J1BQ70 (pentatricopeptide repeat-containing protein At4g21065-like OS=Momordica charantia OX=3673 GN=LOC111004636 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 3.7e-60
Identity = 197/600 (32.83%), Postives = 204/600 (34.00%), Query Frame = 0


Query: 26  RTKELLEEWCLWVSSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTK 85
           +TK LL      V S  NPRAAEQ+CLALLQACNALPKL QIH HI+KLGLHNNPLVLTK
Sbjct: 7   KTKLLLAINNAPVFSRANPRAAEQDCLALLQACNALPKLAQIHAHILKLGLHNNPLVLTK 66

Query: 86  FASISSFIHATDYAACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------ 145
           FASISS I ATDYAA FLFSA ADTRLYDAFLFNTLIRAYAQTGHSK KAL+LY      
Sbjct: 67  FASISSVISATDYAASFLFSAGADTRLYDAFLFNTLIRAYAQTGHSKPKALALYGLMLRD 126

Query: 146 ------------------------------------------------------------ 205
                                                                       
Sbjct: 127 GILPNKFTYPFVLKACAGLEVLNLGQSVHGSVVKFGFDRDVHVRNTMVHMYSCCAGGINF 186

Query: 206 ------------------------------------------------------------ 249
                                                                       
Sbjct: 187 ARKVFDEMPKSDSVTWSAMIGGYARVGRPTEAVSLFREMQLAEVCPDEITMVSILSACTD 246

[Close]

BLAST of HG10004667 vs. ExPASy TrEMBL
Match: A0A6J1KQ01 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima OX=3661 GN=LOC111496170 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 191/588 (32.48%), Postives = 198/588 (33.67%), Query Frame = 0


Query: 39  SSTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDY 98
           +S +NPRAAEQNCLALLQACN LPKLTQIH HI KLGLHNNPLVLTKF SISS I+ATDY
Sbjct: 15  ASRSNPRAAEQNCLALLQACNLLPKLTQIHAHIFKLGLHNNPLVLTKFVSISSVINATDY 74

Query: 99  AACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLY------------------- 158
           AA FLFSAEADTRLYDAFLFNTLIRA+AQTGHSK +ALSLY                   
Sbjct: 75  AASFLFSAEADTRLYDAFLFNTLIRAFAQTGHSKARALSLYGIMLHDGILPNKFTYPFVL 134

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 135 KACAGLEVLSLGQSVHGSVVKFGFDHDVHVQNTMVHMYSCCADGIIFARKVFDEMPKSDS 194

Query: 219 ------------------------------------------------------------ 249
                                                                       
Sbjct: 195 VTWSAMIGGYARVGRSTEAVALFREMQMAEVFPDEITMVSVLSACTDLGALELGKWIEAY 254

[Close]

BLAST of HG10004667 vs. TAIR 10
Match: AT4G33170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 158.3 bits (399), Expect = 8.0e-39
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 141 IYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIR 200
           IY  V +M R++K+ GY P T   L+D+ EE+KE  L  HSEKLA+AFGLLSTPP TPIR
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 201 IVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           ++KNLRVC DCH+A K+I+K+Y+REI++RD NRFH FK G CSCGD+W
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990

[Close]

BLAST of HG10004667 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-37
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 141 IYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIR 200
           IY M+DE+ + ++++GY   T EVLLD+NE+DKE  L+ HSEKLAIAF L+ T PGTP+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525

Query: 201 IVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           I+KNLR+C DCH   K ISK++ REI++RD NRFHHF+ G CSC DFW
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573

[Close]

BLAST of HG10004667 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 130 HSKDKALSLYEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFG 189
           HSK K     EIY M+ ++   +K  GY P+T+ VL D+ E +KE +L  HSE+LAIA+G
Sbjct: 519 HSKSK-----EIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYG 578

Query: 190 LLSTPPGTPIRIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           L+ST PG+P++I KNLRVC+DCH+ +K ISKI  R+I+MRDRNRFHHF  G CSCGDFW
Sbjct: 579 LISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632

[Close]

BLAST of HG10004667 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-36
Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 140 EIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPI 199
           EI  M+ E+  +++ +GYRP T++VLL++ EEDKE+ L+ HSEK+A AFGL+ST PG PI
Sbjct: 538 EINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPI 597

Query: 200 RIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
           RIVKNLR+C DCHS+ K ISK+Y R+I +RDR RFHHF+ G CSC D+W
Sbjct: 598 RIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646

[Close]

BLAST of HG10004667 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-36
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 140 EIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPI 199
           EIY M++EM   ++K+G+ P TSEVL ++ EE KE  L  HSEKLAIAFGL+ST PGT +
Sbjct: 633 EIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 692

Query: 200 RIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 249
            IVKNLRVC +CH A+K ISKIY REII RDR RFHHF+ G CSC D+W
Sbjct: 693 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

The following BLAST results are available for this feature:

BLAST of HG10004667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445200.1	5.0e-67	34.58	PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis m...	[more]
KAA0064932.1	6.5e-67	34.58	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_038884201.1	4.2e-66	34.35	pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida]	[more]
XP_004138859.1	1.2e-65	34.24	pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus] >KGN6294...	[more]
XP_023537014.1	7.7e-60	32.65	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp...	[more]

BLAST of HG10004667 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMZ2	1.1e-37	62.96	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX...	[more]
Q683I9	6.2e-36	61.11	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX...	[more]
Q9SZT8	6.2e-36	57.98	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
Q9FI80	1.8e-35	60.55	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	2.3e-35	64.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]

BLAST of HG10004667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BC37	2.4e-67	34.58	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucumis melo OX=36...	[more]
A0A5A7V9A4	3.1e-67	34.58	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LQ71	5.9e-66	34.24	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3816...	[more]
A0A6J1BQ70	3.7e-60	32.83	pentatricopeptide repeat-containing protein At4g21065-like OS=Momordica charanti...	[more]
A0A6J1KQ01	1.8e-59	32.48	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima O...	[more]

BLAST of HG10004667 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33170.1	8.0e-39	62.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62890.1	4.4e-37	61.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G37380.1	4.4e-37	57.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	1.3e-36	60.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	1.7e-36	64.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 130..238 e-value: 2.2E-34 score: 118.1
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 139..234
None	No IPR available	PANTHER	PTHR47926:SF239	SUBFAMILY NOT NAMED	coord: 139..234
None	No IPR available	PANTHER	PTHR47926:SF239	SUBFAMILY NOT NAMED	coord: 48..140
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 48..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004667.1	HG10004667.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding