HG10004657 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004657
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	Chr08: 19274431 .. 19274808 (+)
RNA-Seq Expression	HG10004657
Synteny	HG10004657

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAG

mRNA sequence

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAG

Coding sequence (CDS)

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAG

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGDWICAR

Homology

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BLAST of HG10004657 vs. NCBI nr
Match: XP_004138734.1 (uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >KAE8652195.1 hypothetical protein Csa_022624 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 1.9e-67
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 125

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BLAST of HG10004657 vs. NCBI nr
Match: XP_038884423.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038884424.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 7.3e-67
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADF GGSYG GR +GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFVGGSYGSGRVLGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGASKDE SAAAYDGDLTRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGASKDETSAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WIC R
Sbjct: 121 WICNR 125

[Close]

BLAST of HG10004657 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 3.1e-65
Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 124

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BLAST of HG10004657 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG +YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 124

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BLAST of HG10004657 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 116/125 (92.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
            MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRG-GSSSFGFTTGPDVRPG 1030

Query: 61   DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
            DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 1031 DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 1090

Query: 121  WICAR 126
            WICAR
Sbjct: 1091 WICAR 1094

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BLAST of HG10004657 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 45/139 (32.37%), Postives = 52/139 (37.41%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEP--------------RADFG-GGSYGGGRAVGSS 62
           RPGDWNC  C   NFQRR SC RC  P                DF  G SYG G +   +
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  SFG--------------------------------FTTGPDVRPGDWYCTVANCGAHNFA 95
           ++G                                F      R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

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BLAST of HG10004657 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-05
Identity = 38/116 (32.76%), Postives = 45/116 (38.79%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRAD---FGGGSYGGGRAVGSSSFGFTTGPDVRP 62
           R GDW C SCN+ NF  R+ C RC  P+ D     GG  GGG   G    G+  G D   
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGS 334

Query: 63  GDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPG 116
           G         G HN        + G S+         G  +R    N GG   R G
Sbjct: 335 G-------GGGYHNRD------RGGNSQGGGGGGGGGGGYSRFNDNNGGGRGGRGG 377

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BLAST of HG10004657 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 30/85 (35.29%), Postives = 38/85 (44.71%), Query Frame = 0


Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 64
          GDW C  + C ++NF RR SC RCG  +         GG  +G +    + G      DW
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGL-FSANDW 70

Query: 65 YCTVANCGAHNFASRSICFKCGASK 88
           C    CG  N+A RS C  C   K
Sbjct: 71 QC--KTCGNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10004657 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 9.1e-04
Identity = 29/85 (34.12%), Postives = 37/85 (43.53%), Query Frame = 0


Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 64
          GDW C  + C ++NF RR SC RCG  +         GG  +G +    + G      DW
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGL-FSANDW 70

Query: 65 YCTVANCGAHNFASRSICFKCGASK 88
           C    C   N+A RS C  C   K
Sbjct: 71 QC--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10004657 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 9.1e-04
Identity = 29/85 (34.12%), Postives = 37/85 (43.53%), Query Frame = 0


Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 64
          GDW C  + C ++NF RR SC RCG  +         GG  +G +    + G      DW
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGL-FSANDW 70

Query: 65 YCTVANCGAHNFASRSICFKCGASK 88
           C    C   N+A RS C  C   K
Sbjct: 71 QC--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10004657 vs. ExPASy TrEMBL
Match: A0A0A0LLW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.3e-68
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 200

Query: 121 WICAR 126
           WICAR
Sbjct: 201 WICAR 205

[Close]

BLAST of HG10004657 vs. ExPASy TrEMBL
Match: A0A1S3BBL4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.3e-68
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 125

[Close]

BLAST of HG10004657 vs. ExPASy TrEMBL
Match: A0A6J1KQR0 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111496351 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 124

[Close]

BLAST of HG10004657 vs. ExPASy TrEMBL
Match: A0A6J1BUS6 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111004930 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64
Identity = 112/125 (89.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGEPRADFGGG YGG   VGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC + NCGAHNFASRSICFKCGA KD+ASA AYDGD+ RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 125

[Close]

BLAST of HG10004657 vs. ExPASy TrEMBL
Match: A0A6J1GJE4 (TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=LOC111454402 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.2e-64
Identity = 115/125 (92.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASN PGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGD 120

Query: 121 WICAR 126
           WICAR
Sbjct: 121 WICAR 124

[Close]

BLAST of HG10004657 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 6.0e-43
Identity = 88/141 (62.41%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGG------GSYGGGRAVGSSSFGFTTG 60
           MSRPGDWNCRSC+HLNFQRRDSCQRCG+ R+  GG      G++ GGRA+  S+FGFTTG
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNF-GGRAM--SAFGFTTG 60

Query: 61  PDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASA----------AAYDGDLTRMRG 120
            DVRPGDWYCTV NCG HNFASRS CFKCG  KDE  A          A +D D+ R R 
Sbjct: 61  SDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRV 120

Query: 121 FNFGGASNRPGWKSGDWICAR 126
              GG   R  WKSGDWIC R
Sbjct: 121 PGNGG---RSSWKSGDWICTR 135

[Close]

BLAST of HG10004657 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 89/144 (61.81%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYG-----GGRAVGSSSFGFTTGP 60
           M+RPGDWNCR C+HLNFQRRDSCQRC EPR   GG S       GGR V SSSFGF TGP
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRP--GGISTDLLSGFGGRPV-SSSFGFNTGP 60

Query: 61  DVRPGDWYCTVANCGAHNFASRSICFKCGASKDE---ASAAAYDGDLTRMRG-----FNF 120
           DVRPGDWYC + +CG HNFA+RS CFKCGA+KDE   +SAAA  G +    G     F F
Sbjct: 61  DVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGF 120

Query: 121 GGASN------RPGWKSGDWICAR 126
           GG+S+      R  WKSGDWIC R
Sbjct: 121 GGSSSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of HG10004657 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-24
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 5   GDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYC 64
           GDW C +C H NF++R+SCQ+CG P+  FGG        V  S++ +    +V  GDWYC
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGG--------VDVSTYLYNR-TEVMAGDWYC 65

Query: 65  TVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGDWICA 124
              NCG+HN+ASR+ C++CG  K E +   Y     +M  +   GA+  PGWK+GDW+C 
Sbjct: 66  GALNCGSHNYASRTSCYRCGMIKVEYTEQYYG---AQMVAYGNDGAACPPGWKTGDWVCP 112

Query: 125 R 126
           R
Sbjct: 126 R 112

[Close]

BLAST of HG10004657 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-11
Identity = 48/143 (33.57%), Postives = 61/143 (42.66%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 62
           R GDW C  C + N+  R  C RC +PR      +    + +             R GDW
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWL------------PRIGDW 64

Query: 63  YCTVANCGAHNFASRSICFKCGASKDEA--SAAAYDGD--LTRMRGFNFGGAS-NRPG-- 122
            CT   C  +N+ASR  C KCG SK+ A  SA A  G    T +  F  G  S ++PG  
Sbjct: 65  ICT--GCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSL 124

Query: 123 ---------------WKSGDWIC 124
                          W+SGDWIC
Sbjct: 125 LAFSNATNQASVHKEWRSGDWIC 133

[Close]

BLAST of HG10004657 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 27/94 (28.72%), Postives = 38/94 (40.43%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 62
           + GDW C++CN LNF +   C RC +                        T   + PG+W
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDK----------------------PTLRQINPGEW 338

Query: 63  YCTVANCGAHNFASRSICFKCGASKDEASAAAYD 97
            C   +C   NF   SIC KC   + +A+    D
Sbjct: 339 EC--ESCNYINFRRNSICLKCDHKRQKAANVTPD 348

The following BLAST results are available for this feature:

BLAST of HG10004657 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138734.1	1.9e-67	95.20	uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 ...	[more]
XP_038884423.1	7.3e-67	95.20	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03888...	[more]
XP_023002539.1	3.1e-65	93.60	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_023538151.1	1.2e-64	92.80	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585459.1	1.5e-64	92.80	Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of HG10004657 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.5e-09	32.37	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	2.2e-05	32.76	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
Q5ZLX5	1.8e-04	35.29	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	9.1e-04	34.12	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	9.1e-04	34.12	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]

BLAST of HG10004657 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW7	9.3e-68	95.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
A0A1S3BBL4	9.3e-68	95.20	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KQR0	1.5e-65	93.60	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1BUS6	2.1e-64	89.60	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]
A0A6J1GJE4	6.2e-64	92.00	TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of HG10004657 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	6.0e-43	62.41	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.2e-40	61.81	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	6.2e-24	42.98	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	7.9e-11	33.57	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	2.6e-06	28.72	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 60..86 e-value: 2.6E-7 score: 40.3 coord: 5..29 e-value: 9.3E-6 score: 35.1
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..30 e-value: 4.6E-4 score: 19.5 coord: 58..87 e-value: 3.5E-6 score: 26.2
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 62..83
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.969523
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 58..89 score: 9.980816
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..32 e-value: 8.6E-11 score: 42.9 coord: 53..90 e-value: 1.0E-13 score: 52.2
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..125
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004657.1	HG10004657.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding