HG10004638 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004638
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 19138761 .. 19139111 (-)
RNA-Seq Expression	HG10004638
Synteny	HG10004638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATTCATCAACTAAAGTTAGGGCTTCACCTAATCAAGTTCTTGGAAGTAATACGAGGAGCTTTGATCGCTGCACCAATCAAACTGCTTCCCGTGATGTAAATCCCCCTATCAAATTCGCAACCGCGCAAATTCTCATCATTCAGAAAGGAAATCAACAAAATAAACATTCTTCAAGAGAAACACAAAGAGTGCTGAATAAGATACCAGGCGGCGCCGAGGACGGAAACGCCGATGGCGATGGCGATGCCGATGGCGGAGAAAGTGTAGGGAGAGATGTTGATGAGAGCGCGAGCCCAGGAGCTAGAACGTGCAAGCACGACGGCGCTGGACATGATTACCTATGA

mRNA sequence

ATGAACAATTCATCAACTAAAGTTAGGGCTTCACCTAATCAAGTTCTTGGAAGTAATACGAGGAGCTTTGATCGCTGCACCAATCAAACTGCTTCCCGTGATGTAAATCCCCCTATCAAATTCGCAACCGCGCAAATTCTCATCATTCAGAAAGGAAATCAACAAAATAAACATTCTTCAAGAGAAACACAAAGAGTGCTGAATAAGATACCAGGCGGCGCCGAGGACGGAAACGCCGATGGCGATGGCGATGCCGATGGCGGAGAAAGTGTAGGGAGAGATGTTGATGAGAGCGCGAGCCCAGGAGCTAGAACGTGCAAGCACGACGGCGCTGGACATGATTACCTATGA

Coding sequence (CDS)

ATGAACAATTCATCAACTAAAGTTAGGGCTTCACCTAATCAAGTTCTTGGAAGTAATACGAGGAGCTTTGATCGCTGCACCAATCAAACTGCTTCCCGTGATGTAAATCCCCCTATCAAATTCGCAACCGCGCAAATTCTCATCATTCAGAAAGGAAATCAACAAAATAAACATTCTTCAAGAGAAACACAAAGAGTGCTGAATAAGATACCAGGCGGCGCCGAGGACGGAAACGCCGATGGCGATGGCGATGCCGATGGCGGAGAAAGTGTAGGGAGAGATGTTGATGAGAGCGCGAGCCCAGGAGCTAGAACGTGCAAGCACGACGGCGCTGGACATGATTACCTATGA

Protein sequence

MNNSSTKVRASPNQVLGSNTRSFDRCTNQTASRDVNPPIKFATAQILIIQKGNQQNKHSSRETQRVLNKIPGGAEDGNADGDGDADGGESVGRDVDESASPGARTCKHDGAGHDYL

Homology

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BLAST of HG10004638 vs. ExPASy TrEMBL
Match: A0A498HNM9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012173 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 71  PGGAEDGNADGDGDADGGESVGRDVDESASPGAR 105
           PGGAEDG+ADGDGD D GE VGRD+DE A PGAR
Sbjct: 16  PGGAEDGDADGDGDTDSGECVGRDLDEGACPGAR 49

The following BLAST results are available for this feature:

BLAST of HG10004638 vs.


Match Name	E-value	Identity	Description

BLAST of HG10004638 vs.


Match Name	E-value	Identity	Description

BLAST of HG10004638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498HNM9	6.7e-04	79.41	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012173 PE=3 SV=1	[more]

BLAST of HG10004638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004638.1	HG10004638.1	mRNA