HG10004601 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004601
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLPXTG-motif cell wall anchor domain protein
LocationChr08: 18760766 .. 18762835 (+)
RNA-Seq ExpressionHG10004601
SyntenyHG10004601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCAAAACATGCTCCTTTATATTGAAGGGTCCAGGATTCATAGTGAACTCAAACCGCGTGCCTTTGAAAAAGGGTCGAGTCGGAAGTGTTTTGGCCATCAAATGGCCAAGAGGCACAACCGCAATTTGTGCAGCAATCGAAGATACTGACAATGGGTTGGATCTATACCAGAAGAATTGGTTCACAAAGGAGAGTATGACACAAGCCGCAACCCCCAAAACCCACATTCTGAATGTGAGAACTGGCAAGTTGGGGTCATCGGTTTTCGGAACTGTAATATCAACTTGCTTGATCGGGCACTCATCGTGGGTAGTCACCGTCATAGGGTGCTCACTCTGAATCTCGGATACGCTAGTCGACATGGTAATTAGTTAGAAAGTTTCGTTGTGTTGTAGAGTGCAAGGTGAGACTCTCTACCACAACTTCTTCATGGAGATCGCAAGACAATCTGTAGAGTAAAAAGAAACTAAATAAAAGTGGGATTTTGAGTGAAATATAAAATCGATTCCTAAAGAAGTCATGATTCTGTTTCAATACATCCAATCAATGTTCAAAATTAAGTCATAATTCATAAGTGAGAGCATAGTATTCCATTTTCGTTGACATGTCGATATTTCGACCTGAAGGATGAATTGATATTTCTATTATATCGTAAAAAAAATTCACAAAACATAAAAAATAAGCAAGAAAATGTAAGTATTGTAAATATAATATAAATAATATATATGTAAGCTTGTTTAAAAATCATAAAATGTTTATTTACTAATTTAGGTTTATTTTTTGAATTTTTCGTTTTTATAATTTTTCCGATTTCATCAAAATTTTCCTAAAATTAAGATCTTAATATTTTCGTGACATCGACGTTTTAAACCTTGGGTGAGAGTTTACTTTTTAAGAAAAAAAAACTTTCCATGACTACTAATATTATTTTTAAGAAAAAGACGTTTCTCAAAATAATAATAATATCATTATTATTAAGACAGCCATGCAAAATATTGGAAATGGTACAAATATTTGACAAAGATCGTTTTAACCAGGAAATTCTACATTTTATAAAAGTTACCTAATTTATAAAAATATTTCATTTTTACATTTTGAGTGTATGAAAATCTATTTTTTAACCCTGAGTTAAATATATATATATTATCTCTCCTCTCTCATGCCAGTAAAGCATTGACAGAATGGGGTTGGTGGTACTTTAAATACACCTAAATTACTCAATAATTTGGCTTATTTGAATGATCAAAATTTTGGAAGCAACAATATTTTGTCTTAATTGAATGGTCAATTTTGAAAGCAACAATAACATTATGAAATTATATGGCAGATTCTCATTCCAAGTCCAATTTAACTTTAGGAAAAAAAAAAACTTTTATTTATTTATTTTTACAACAAAACTGTTTTTATATCCAAACATGCCTTTAGTCTTAGACTTGCCAAAATCATAATTGGTAGTTAGAAAATTTTATAGTTTAAAAACCTATTTGACACAAATTAGACTCAATTTATAATTTAAGTTATCTAAAATAATAAATATACATGCCTACATTTATATAATAACTATCGAGTGGTTATCATATAAAAAAAAAATCCAAAACTTACCTTATCAATTGTTGGATGAAGATCGGCTTCGGGAACTAAGAATTCCTGAAATTAAAAAAAATAATGATCAATTAAGAGAATGGACATTCAATTTTTGAGAAAGGAAAAAAGAAAAAACAAATCAATGAATGGAAAAAAATGAAGGAAATGTGCGGAAATAAAAAAAAAAAAAAAATTAAAAAGTCGGAAAAAGGGACAAAAAAAGATTGAAAAAATACAATAGAAAATAAGATTTTTTTCTGTTTTTTAAAAGGAAAAGCCTAAAATAGTCTTTTGGCTCATCTCTTTCTTTCCCTCTCCGCTGTGGTTTTTAGAGAGACCACTGACTCTGCTTACTCATCGTCGCCGGCGACGATAGGAACTGGTCAACCACCATACGACGGCGGTCAAACCGACCATCGGGCGGCGTTTTCGGCGGTGCGCAGGCGAAGTGAAGAGGAAAAAGAAAAGAAGAGAAAATAA

mRNA sequence

ATGGTAATCAAAACATGCTCCTTTATATTGAAGGGTCCAGGATTCATAGTGAACTCAAACCGCGTGCCTTTGAAAAAGGGTCGAGTCGGAAGTGTTTTGGCCATCAAATGGCCAAGAGGCACAACCGCAATTTGTGCAGCAATCGAAGATACTGACAATGGGTTGGATCTATACCAGAAGAATTGGTTCACAAAGGAGAGTATGACACAAGCCGCAACCCCCAAAACCCACATTCTGAATGTGAGAACTGGCAAGTTGGGGTCATCGGTTTTCGGAACTGTAATATCAACTTGCTTGATCGGGCACTCATCAGAGACCACTGACTCTGCTTACTCATCGTCGCCGGCGACGATAGGAACTGGTCAACCACCATACGACGGCGGTCAAACCGACCATCGGGCGGCGTTTTCGGCGGTGCGCAGGCGAAGTGAAGAGGAAAAAGAAAAGAAGAGAAAATAA

Coding sequence (CDS)

ATGGTAATCAAAACATGCTCCTTTATATTGAAGGGTCCAGGATTCATAGTGAACTCAAACCGCGTGCCTTTGAAAAAGGGTCGAGTCGGAAGTGTTTTGGCCATCAAATGGCCAAGAGGCACAACCGCAATTTGTGCAGCAATCGAAGATACTGACAATGGGTTGGATCTATACCAGAAGAATTGGTTCACAAAGGAGAGTATGACACAAGCCGCAACCCCCAAAACCCACATTCTGAATGTGAGAACTGGCAAGTTGGGGTCATCGGTTTTCGGAACTGTAATATCAACTTGCTTGATCGGGCACTCATCAGAGACCACTGACTCTGCTTACTCATCGTCGCCGGCGACGATAGGAACTGGTCAACCACCATACGACGGCGGTCAAACCGACCATCGGGCGGCGTTTTCGGCGGTGCGCAGGCGAAGTGAAGAGGAAAAAGAAAAGAAGAGAAAATAA

Protein sequence

MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQKNWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDSAYSSSPATIGTGQPPYDGGQTDHRAAFSAVRRRSEEEKEKKRK
Homology
BLAST of HG10004601 vs. NCBI nr
Match: PON73570.1 (hypothetical protein PanWU01x14_057520, partial [Parasponia andersonii])

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-22
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV++TCS  L GPG  VNS RVP +K R+GS+ A+ WPRGTTAI A +   + G   YQK
Sbjct: 1   MVMRTCSLTLNGPGLRVNSQRVPRRKERLGSLAAMSWPRGTTAIWAEMAVMERGSVRYQK 60

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDS 110
           NW  KES    + PK HI  V TG++GSSV GTV +TC  G  S ++ +
Sbjct: 61  NWLRKESRAHESVPKNHIRKVNTGRVGSSVVGTVRATCSTGEFSSSSST 109

BLAST of HG10004601 vs. NCBI nr
Match: KAF8391690.1 (hypothetical protein HHK36_023999 [Tetracentron sinense])

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-21
Identity = 59/104 (56.73%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRV-PLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQ 60
           MVIKTCSF L GPGF  N + V  +  G  GSV AI +P G T ICA  ED DNG   Y 
Sbjct: 1   MVIKTCSFKLNGPGFNENDHFVIGILMGLEGSVAAISFPSGRTTICAETEDMDNGFWRYP 60

Query: 61  KNWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHS 104
           KNWF K   TQ  TP TH+ NVR G +GSSV GTV  TC  G S
Sbjct: 61  KNWFKKARSTQEMTPSTHVRNVRAGNVGSSVIGTVSRTCSTGES 104

BLAST of HG10004601 vs. NCBI nr
Match: PON92826.1 (hypothetical protein TorRG33x02_114240 [Trema orientale])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV++TCS  L GPG  VNS RVP +K R+GS+ A+ WPRGTTAI A +   + G   YQK
Sbjct: 1   MVMRTCSLTLNGPGLRVNSQRVPRRKERLGSLAAMSWPRGTTAIWAEMAVMERGSVRYQK 60

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDSAYSSSPATIGT 120
           NW  KES    + PK HI  V TG++GSSV GTV +TC  G         +SSSP++   
Sbjct: 61  NWLRKESRAHESVPKNHIRKVSTGRVGSSVVGTVRATCSTGE--------FSSSPSSSTA 120

Query: 121 GQPPYDGGQTDHRAAFSAVRRRSEEEKEKKRK 153
                D  + D  A+ S++    +  K+ K+K
Sbjct: 121 TTTFLD--EADELASSSSLDFTDQPTKKLKKK 142

BLAST of HG10004601 vs. NCBI nr
Match: BAJ85002.1 (predicted protein, partial [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV+ TCSF LKGPG  VNS+R P KK R GS  A++ P GTTA CA +    +G   YQK
Sbjct: 22  MVMSTCSFTLKGPGLSVNSHRRPRKKARSGSAAAMRRPSGTTATCAEMAVISSGSLRYQK 81

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDSAYSSSPATIGT 120
               KES TQ A P THI NV TG  GSS  GTV +TC        + + +S+S +   +
Sbjct: 82  KVLRKESATQEAAPSTHIRNVSTGVDGSSPTGTVSATC--------STAEFSASRSPTSS 139

Query: 121 GQPPYD 127
           G+P  D
Sbjct: 142 GEPRDD 139

BLAST of HG10004601 vs. NCBI nr
Match: EEC79911.1 (hypothetical protein OsI_21458 [Oryza sativa Indica Group] >EEE65015.1 hypothetical protein OsJ_19966 [Oryza sativa Japonica Group] >KAB8101011.1 hypothetical protein EE612_031678 [Oryza sativa] >BAF18580.1 Os06g0127600 [Oryza sativa Japonica Group] >BAS95937.1 Os06g0127600 [Oryza sativa Japonica Group])

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-17
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV+ TCS  L GPG  VNS+  P KK R GS  A++ P GTTAICA +  T +G   YQK
Sbjct: 16  MVMSTCSLTLNGPGLRVNSHGRPRKKTRSGSAAAMRRPSGTTAICAEMAVTVSGSLRYQK 75

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSS 105
               K+S TQ A P THI NV TG  GSS  GTV +TC  G  S
Sbjct: 76  KVLRKDSTTQDAVPSTHIRNVSTGVAGSSPTGTVSATCSTGEFS 119

BLAST of HG10004601 vs. ExPASy TrEMBL
Match: A0A2P2IVI1 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 65/107 (60.75%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MVI+TCSF LKGPGF VNS RVPLK  R   + AI  PRGTTA  A +   D G   YQK
Sbjct: 1   MVIRTCSFTLKGPGFKVNSQRVPLKNARSVILAAISRPRGTTATWAEMAVIDRGSVRYQK 60

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETT 108
           NW  K++ TQ   PK HILNVRTGK GSSV GTV +TCLIG  S  +
Sbjct: 61  NWLRKDNRTQEMVPKNHILNVRTGKEGSSVVGTVRATCLIGEPSSVS 107

BLAST of HG10004601 vs. ExPASy TrEMBL
Match: A0A2P5DJX3 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_057520 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-22
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV++TCS  L GPG  VNS RVP +K R+GS+ A+ WPRGTTAI A +   + G   YQK
Sbjct: 1   MVMRTCSLTLNGPGLRVNSQRVPRRKERLGSLAAMSWPRGTTAIWAEMAVMERGSVRYQK 60

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDS 110
           NW  KES    + PK HI  V TG++GSSV GTV +TC  G  S ++ +
Sbjct: 61  NWLRKESRAHESVPKNHIRKVNTGRVGSSVVGTVRATCSTGEFSSSSST 109

BLAST of HG10004601 vs. ExPASy TrEMBL
Match: A0A2P5F4W1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_114240 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.1e-21
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV++TCS  L GPG  VNS RVP +K R+GS+ A+ WPRGTTAI A +   + G   YQK
Sbjct: 1   MVMRTCSLTLNGPGLRVNSQRVPRRKERLGSLAAMSWPRGTTAIWAEMAVMERGSVRYQK 60

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDSAYSSSPATIGT 120
           NW  KES    + PK HI  V TG++GSSV GTV +TC  G         +SSSP++   
Sbjct: 61  NWLRKESRAHESVPKNHIRKVSTGRVGSSVVGTVRATCSTGE--------FSSSPSSSTA 120

Query: 121 GQPPYDGGQTDHRAAFSAVRRRSEEEKEKKRK 153
                D  + D  A+ S++    +  K+ K+K
Sbjct: 121 TTTFLD--EADELASSSSLDFTDQPTKKLKKK 142

BLAST of HG10004601 vs. ExPASy TrEMBL
Match: F2CQ81 (Predicted protein (Fragment) OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.7e-19
Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 0

Query: 1   MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
           MV+ TCSF LKGPG  VNS+R P KK R GS  A++ P GTTA CA +    +G   YQK
Sbjct: 22  MVMSTCSFTLKGPGLSVNSHRRPRKKARSGSAAAMRRPSGTTATCAEMAVISSGSLRYQK 81

Query: 61  NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTCLIGHSSETTDSAYSSSPATIGT 120
               KES TQ A P THI NV TG  GSS  GTV +TC        + + +S+S +   +
Sbjct: 82  KVLRKESATQEAAPSTHIRNVSTGVDGSSPTGTVSATC--------STAEFSASRSPTSS 139

Query: 121 GQPPYD 127
           G+P  D
Sbjct: 142 GEPRDD 139

BLAST of HG10004601 vs. ExPASy TrEMBL
Match: A0A0E0DW16 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 54/98 (55.10%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 1  MVIKTCSFILKGPGFIVNSNRVPLKKGRVGSVLAIKWPRGTTAICAAIEDTDNGLDLYQK 60
          MV+ TCS  L GPG  VNS+  P KK   GSV A++ P GTTAICA +    +G   YQK
Sbjct: 1  MVMSTCSLTLNGPGLSVNSHGRPRKKACSGSVAAMRRPSGTTAICAEMAVMVSGSLRYQK 60

Query: 61 NWFTKESMTQAATPKTHILNVRTGKLGSSVFGTVISTC 99
          NW  KES    A P THILNV TG  GSS+ GTV  TC
Sbjct: 61 NWLRKESTAHDAVPSTHILNVSTGVSGSSLTGTVSVTC 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON73570.15.1e-2251.38hypothetical protein PanWU01x14_057520, partial [Parasponia andersonii][more]
KAF8391690.15.6e-2156.73hypothetical protein HHK36_023999 [Tetracentron sinense][more]
PON92826.11.3e-2043.42hypothetical protein TorRG33x02_114240 [Trema orientale][more]
BAJ85002.11.2e-1847.62predicted protein, partial [Hordeum vulgare subsp. vulgare][more]
EEC79911.13.8e-1752.88hypothetical protein OsI_21458 [Oryza sativa Indica Group] >EEE65015.1 hypotheti... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P2IVI14.1e-2560.75Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A2P5DJX32.5e-2251.38Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5F4W16.1e-2143.42Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_114240 PE=4 SV... [more]
F2CQ815.7e-1947.62Predicted protein (Fragment) OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV... [more]
A0A0E0DW162.8e-1855.10Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004601.1HG10004601.1mRNA