HG10004501 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004501
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
LocationChr08: 17719755 .. 17723150 (-)
RNA-Seq ExpressionHG10004501
SyntenyHG10004501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACACATACTCTAAATTTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGGTACCTTGACATAAATGGCGAACTCAATAACCTCGTTCCTATCCTAATTCCTAAGATAGCTTAATTTCATTGCCCACAGTCGACTTATATTGTAAATGTTGGGCATCAGGTAGCTATATGATAGGCCTTAACCTCAATTCATTTATCAACCACCGAGGGAGAATTCGAGAGCTCCCTTTCCTCTCCATGATCTCATTCAGAGAACAATTACAAGCAAAATTAGCAAAAAGATATCCCTACTCACTCCCTCAACTGTTTACATACTCCTCACGTAACTTTCAAAAGACCCTCCCCCCAACTAACAAATTCCATGGGCCCACACAATGTACATATTATTTCCCTTACACGTGTTACCTTCTCCCTTCTTCGCACGCTTATGAACATATATTCTAGTAATTCGGGGCCTATCACCATATTCCAACGAAGAAAAACTTTTATGTAATTTGGTTGTTGGCTCATATTCGTAGGCCCTTATTTTTAGGAAGATAGTGCTATTTCCTTTTCTGAATCATGCTCATCGGGAGGCTTTGTGAAATTTCATCTCTAAGAGCAAGCTAGCACAAAACTATGTACATTTATGTAGTAAAATGATGAGCAAAGATCTCCTGAATGCCAGCTACTATTTCTGGTGTAAGTAAAGAAACTCCAGACATGGAGGAGCCCTTAGGTGAAAGTGATTTTGACCATTCAAACCAATCTAGTAGTTTCATCTATTCTCTATCTGTACAACTGAGTAAACAAATAGGAGGCTTATATTCTGATATAATGACAAGTGTAGAATGATAGAATCAAACTCAACGTCTTTCAGTGTGGAAACTTCCTGTGCGCCTTGTTCATGCAGAGACTCTAAAATTTAGTGGGACGTGCGAGTAGAAAAAAGTACCGTGAATATGTAGACTTGATAGAATTATATTTTGTTTGCTTTGGGACTTTACGGCAATATTTAGAGTTTTCTTGTTCTGATTGATTTCGTACTGGCTTCATATTGTATGATTGTTCTTCTGGCCAATATGAATAATGCTAAAATTAGTAGCTAGATGTGTAATTTCTTTTTGGTTGTTTTACCTTTGTTTTAAATATGAATAATGCTAAAATTAGTAGCTAGATGTGTAATTTCTTTTTGGTTGTTTTACCTTTGTTTTAAGCTGATTATGTCTGCACTTTTCCATGAACCAGAGAGCAAGAAATATATGGAACAGTGGCTCTCCTCTCTTCAGAACTGCTAATGCTCTGTTTCCAAGAAGAAAACATTTTGTGATCTATAGCCATTTAAAAAATTGAAAAAAAAAATTGAAAAAAGAAAAAAGAAAAAAGATATAAGAATACTATCTATTCTGGCTTCGTTTGATATTACTTCTGAGAAGCAAATTGGATGCAAACAGTGGGTGGAGATTCTCATCTTTTCAATTCTTTTTGACCATGCTCTTAAGAAGAGAGACTTAAAAAAAATAGACCTCATCTGGGACGAAGCTTGTTAAAATGGGATGTAAATACTTTGACACTCCTGTATAAATATGGAAGGGAGTGAGGAGGAAAAAGTTTGAGCCAACCAATTGGGGTTTGAAGAAAAAGAATATTAAAGAAGAGTTGGAAGTGGAAGTGGGAGTGGAATTGTTTGTTCTTCTTTGAAGTTAAGTTGATGTATAAAGTGGGAAGTGTTTAGTTCATGTGAAAGTTGCTGTGAATAGTGACTCATTTATGTATGCATCATGTAAAATATGATATGAGTGAGTTTGGTCCATCTAAATGTTGCTGTAAATGGTGGACCCATTTGTAAAATTTGTTGTACATGGTAACACAGTTATGCAGGCATTGTAAATTGTAAATATCTCTATCCCCATTCAATGTAATATTCTTTAGATATATGTATATATAGCAGTAAAGTTGCTATACTAGATTATACTATATTTTTTTTCCGAGATAACAACAGTTTTCTTAAAATTGAAAAATATGATTTTTTTTTCCTTCTCTTTTTTTAGTTCAACGAGATTGGAAATCAAAGGACTCACGTTTCAAATTTCTTTGTTTCTTCTAAATTATTTTACCGTTGAATTTCTTCTGTTGTTAAATAGAATATTGCTATATGCTTAATTATTATCACTAAAAGTACGCCCTACCTATATTTCAATAAAAATTGGATTCATACTCAGGTTGTTAGGATTGCACTTATTCGAAATAGAGGTTGTTTGTTCGATGTTTGAGGAAGTTCTCTTGAATTATTTATTTATTTATTTTTCTATGTTATGGGGCATTTAGCTTGAGAGGGATGGTAGCATTTCTCGTGGGGTTGAACAATCTGGGGAGGACCTTCGGATATGATTATATACCTATTACCTAGACTTTAGAGCTATGCTCAAGTTAAAATAATAATAATAACAACAAAAAAAAATACAATTTACAAATTAGAACTTCCAAAATTTATAAGTGATTTCTTTCTCTAGGATTTTTATACATCACTAAAACTTGATTACAATTTTTAGACTACAACCAAAAGTACATACAATTATTATAAATGAAAGATTGATCTAATACGCTTCAAAAGACGTACCCAAATCCCCTTTAGCATTTTTTTTTCCCTTTGCAATGCATTTGATTTACAAGTACCTAAATTTGAACTCAAGTCAAAGCAACAATACCAAGTTTGCCATGTTAGCGTATGAACAGCAAACCCTGAGTCCAGACCTTGACATGGATCAGTCATGAGGCAGAAGTATTTGAAGTTAGAAACACACTTAAAACAAGAGTTTAATAACAAATCAAAATAAATACAGGTACAGAAGACGTTTCTGATTATATGTTGCTGTTCTTCCTTTCTTTTCAGGTCAAATGGCTGCTGTTTCGCCATGA

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACACATACTCTAAATTTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTCAAATGGCTGCTGTTTCGCCATGA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACACATACTCTAAATTTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTCAAATGGCTGCTGTTTCGCCATGA

Protein sequence

MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQMAAVSP
Homology
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BLAST of HG10004501 vs. NCBI nr
Match: KAA0065096.1 (Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ 158
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG+
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK 157

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BLAST of HG10004501 vs. NCBI nr
Match: XP_038886443.1 (uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886445.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886446.1 uncharacterized protein LOC120076637 [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

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BLAST of HG10004501 vs. NCBI nr
Match: XP_004152600.1 (uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736757.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736758.1 uncharacterized protein LOC101213956 [Cucumis sativus] >KGN62990.2 hypothetical protein Csa_022594 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

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BLAST of HG10004501 vs. NCBI nr
Match: XP_008444920.1 (PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_016900065.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSA 155

[Close]
BLAST of HG10004501 vs. NCBI nr
Match: XP_022997278.1 (uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997280.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 3.8e-76
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ 158
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

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BLAST of HG10004501 vs. ExPASy TrEMBL
Match: A0A0A0LLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.8e-83
Identity = 153/163 (93.87%), Postives = 155/163 (95.09%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQMAAVSP 164
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA      SP
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAADYVCTSP 163

[Close]
BLAST of HG10004501 vs. ExPASy TrEMBL
Match: A0A5A7VFJ3 (Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004290 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ 158
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG+
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK 157

[Close]
BLAST of HG10004501 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.6e-82
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSA 155

[Close]
BLAST of HG10004501 vs. ExPASy TrEMBL
Match: A0A6J1KDE3 (uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ 158
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of HG10004501 vs. ExPASy TrEMBL
Match: A0A6J1HCV2 (uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ 158
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of HG10004501 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-14
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETHTLNFPLVNGANISS 60
           M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T         + SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTT-----SKTGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD 120
           S ++ KR W  R       E D +      G V   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYGRIYNDFVDETKNSILS 145
               F VLVP Y ++ +   ++  N   S
Sbjct: 121 DCGGFVVLVPLYKKVMDGSGNQIPNGFFS 134

[Close]
BLAST of HG10004501 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0 

Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 149 ILSAVGNI 150
           +LSAV N+
Sbjct: 108 LLSAVKNL 114

[Close]
BLAST of HG10004501 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 149 ILSAVGNINDSFSAG 157
           +LSAV N+ +    G
Sbjct: 108 LLSAVKNLPNGLPPG 121

The following BLAST results are available for this feature:
BLAST of HG10004501 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065096.12.1e-8296.82Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa][more]
XP_038886443.11.0e-8198.06uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 unchara... [more]
XP_004152600.11.8e-8197.42uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharact... [more]
XP_008444920.11.8e-8196.77PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 P... [more]
XP_022997278.13.8e-7691.72uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279... [more]
BLAST of HG10004501 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10004501 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLD07.8e-8393.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1[more]
A0A5A7VFJ31.0e-8296.82Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3BB058.6e-8296.77uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=... [more]
A0A6J1KDE31.9e-7691.72uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV21.9e-7691.72uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of HG10004501 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65480.14.5e-1436.24unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.22.3e-1051.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G38060.12.3e-1048.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..115
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..158
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004501.1HG10004501.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity