HG10004491 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004491
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 17597282 .. 17598622 (-)
RNA-Seq Expression	HG10004491
Synteny	HG10004491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGATTAGAGCTTCTTCAACGCCGCCGCAAGACGACGGAGCAGGGGCGTTTTCCGGCCGGAAACAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGGACGTCCTTTTGTGCGTCTTCTCAAGAGACGCTGCGATATGTCAAAGCCTTTTTCGTTGGTTGGGTTAGTTCTTTTGGTTAAAGTTAAAAGTACTCGCTACGAGGTTTTAGTTTCAGTAATTTCAATATATCTAATTTTAGTTTTTGTATTTTTGTTAATTCTTAGTTGATTTTTATGGCCAAATAATTATAATAATTTTCATGAATATAATAGATAAATATATTTTTAAAATAATAGATAACAAAAAGAAAAAAAATCTAACAACAATAAATTAATAGGAGGGACTACACATATTGAAAGTTAAAATTAAATATGTGCAAGTAGACTAAAATTAAACAAATTTGAACTAAAAATGATATTTTAAGTTTTTAACTTATTAATTAATAGAAAAATATCTACTATCTTAATTACGTGTTCCTCCTCTCCTTCATTATTTGACACGTAATTAAGTAATTTATTTTAATTATTATTCCACATCCCAAGCGAGGATTAGAGGTAAGTACTAGAAATTTCCTCTATTTATAGTTCTATCTCCATAATTAGAGTTTGAATGCTTTTTAAAGTAGTTTAATATGTCGCACGTTTTAAAACTTAAAAAGAAAAATGTTTGCTTACGTTTACATAAATTACCAAAATCATAAAAAAGTTCTAAACTCGAATGAATGAGGAAAGTAGTTTAATATGTCACACGTTTTAAAACTTAAAAAAACAAACTTTTGCTTACGTTTACATCAATTACCAGAATCATAAAAAAAAATTCTAAACTCGAATGAACGAAAGAGCGATAGAAAATAGAAAGAAGGGGTAAAAAATTCTAAACATAAAAGAATGTGAGAGAGAAATCTTAATCCGCATGCTTAGTGGTCTGTTTTTTTTATTTTAAAAAAAAAAATTTAAAAAGTAGGACATATTTCATTTATTCAAAGATTGGGACATCATTCCCCAAGGATGTCTTCTGAAAAAAAAAAAAAGGTATTTTAATCCAAACATGTTTTTAAAGGACATGTTTGTATTACTTTTGAGAAAAAAAGTATTTAAATCCAAACATGTTTTTAAAGTAATTCCAAATAGAGAGGAAGGTTATAAGTTTTAAGAGGGGATATTGTTTGGTTGGGGCAGGGAAAGAAGATGACAGCAAGGAGCGAGAAGGAAGCGGCAGAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGACGCAGAGAACACCAAGAAAGGAACTTAA

mRNA sequence

ATGGACGAGATTAGAGCTTCTTCAACGCCGCCGCAAGACGACGGAGCAGGGGCGTTTTCCGGCCGGAAACAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGGACGTCCTTTTGTGCGTCTTCTCAAGAGACGCTGCGATATGTCAAAGCCTTTTTCGTTGGTTGGGGAAAGAAGATGACAGCAAGGAGCGAGAAGGAAGCGGCAGAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGACGCAGAGAACACCAAGAAAGGAACTTAA

Coding sequence (CDS)

ATGGACGAGATTAGAGCTTCTTCAACGCCGCCGCAAGACGACGGAGCAGGGGCGTTTTCCGGCCGGAAACAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGGACGTCCTTTTGTGCGTCTTCTCAAGAGACGCTGCGATATGTCAAAGCCTTTTTCGTTGGTTGGGGAAAGAAGATGACAGCAAGGAGCGAGAAGGAAGCGGCAGAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGACGCAGAGAACACCAAGAAAGGAACTTAA

Protein sequence

MDEIRASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGKKMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT

Homology

[Close]

BLAST of HG10004491 vs. NCBI nr
Match: XP_038886259.1 (uncharacterized protein LOC120076486 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.0e-38
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDEIRASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGKK 60
          MDEIRASSTPPQDDGAG FSGRKQEASVMD VKKGW  FCASSQETLRYVKAFFVGWGKK
Sbjct: 1  MDEIRASSTPPQDDGAGTFSGRKQEASVMDGVKKGWRFFCASSQETLRYVKAFFVGWGKK 60

Query: 61 MTARSEKEAAEADLKTAKMQVQATEDAENTKKG 94
          MTA+SEKEAAEADLKTAKMQVQATE AENTK+G
Sbjct: 61 MTAKSEKEAAEADLKTAKMQVQATEAAENTKRG 93

[Close]

BLAST of HG10004491 vs. NCBI nr
Match: KAA0065108.1 (hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.8e-33
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDEIR-ASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGK 60
          MDE R A+STPPQDDGA AFSGRKQEASVMDRVKKG TSF ASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          K+TA+SEKEAAEADLKTAKMQVQATE AEN K GT
Sbjct: 61 KITAKSEKEAAEADLKTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of HG10004491 vs. NCBI nr
Match: XP_008444894.1 (PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDEIR-ASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGK 60
          MDE R A+STPPQDDGA AFSGRKQEASVMDRVKKG TSF ASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          K+TA+SEKEAAEADL+TAKMQVQATE AEN K GT
Sbjct: 61 KITAKSEKEAAEADLRTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of HG10004491 vs. NCBI nr
Match: XP_023001883.1 (uncharacterized protein LOC111495934 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-31
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MDEIRASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGKK 60
          MDEIRAS+ P QDDGAG FSG K+EASVMDRVKKG  +  ASSQE LRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          MTA+SEKEAAEADLK AKMQV+ATE AENTKKGT
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 94

[Close]

BLAST of HG10004491 vs. NCBI nr
Match: XP_022951050.1 (uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothetical protein SDJN03_18085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MDEIRASS----TPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVG 60
          MDEIRAS+     PPQD+GAG FSG K+EASVMDRVKKG  +  ASSQE LRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          WGKKMTA+SEKEAAEADLK AKMQV+ATE AEN KKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 98

[Close]

BLAST of HG10004491 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.3e-33
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDEIR-ASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGK 60
          MDE R A+STPPQDDGA AFSGRKQEASVMDRVKKG TSF ASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          K+TA+SEKEAAEADLKTAKMQVQATE AEN K GT
Sbjct: 61 KITAKSEKEAAEADLKTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of HG10004491 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.5e-33
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDEIR-ASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGK 60
          MDE R A+STPPQDDGA AFSGRKQEASVMDRVKKG TSF ASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          K+TA+SEKEAAEADL+TAKMQVQATE AEN K GT
Sbjct: 61 KITAKSEKEAAEADLRTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of HG10004491 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MDEIRASSTPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGKK 60
          MDEIRAS+ P QDDGAG FSG K+EASVMDRVKKG  +  ASSQE LRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          MTA+SEKEAAEADLK AKMQV+ATE AENTKKGT
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 94

[Close]

BLAST of HG10004491 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MDEIRASS----TPPQDDGAGAFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVG 60
          MDEIRAS+     PPQD+GAG FSG K+EASVMDRVKKG  +  ASSQE LRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTARSEKEAAEADLKTAKMQVQATEDAENTKKGT 95
          WGKKMTA+SEKEAAEADLK AKMQV+ATE AEN KKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 98

[Close]

BLAST of HG10004491 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 29 MDRVKKGWTSFCASSQETLRYVKAFFVGWGKKMTARSEKEAAEADLKTAKMQVQATEDAE 88
          MDR+K G  SF ASSQETLRYVKAFFVGWGKKMTA++E+EAA+ADLKTAKMQVQATE AE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 89 NTK 92
          NTK
Sbjct: 61 NTK 63

[Close]

BLAST of HG10004491 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 18 AFSGRKQEASVMDRVKKGWTSFCASSQETLRYVKAFFVGWGKKMTARSEKEAAEADLKTA 77
          A + R+   S+ DRVK    S   + QE   YVKAFFVG  K++TA++EKEA EA L   
Sbjct: 4  AETSRQPAKSLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTET 63

Query: 78 KMQVQATEDAENTKK 93
          KMQV AT++AEN KK
Sbjct: 64 KMQVDATDEAENAKK 78

The following BLAST results are available for this feature:

BLAST of HG10004491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886259.1	7.0e-38	92.47	uncharacterized protein LOC120076486 [Benincasa hispida]	[more]
KAA0065108.1	8.8e-33	87.37	hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa]	[more]
XP_008444894.1	2.0e-32	86.32	PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo]	[more]
XP_023001883.1	4.8e-31	82.98	uncharacterized protein LOC111495934 [Cucurbita maxima]	[more]
XP_022951050.1	1.2e-29	78.57	uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothet...	[more]

BLAST of HG10004491 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBV2	4.3e-33	87.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BC67	9.5e-33	86.32	uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=...	[more]
A0A6J1KRV8	2.3e-31	82.98	uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934...	[more]
A0A6J1GHI8	5.8e-30	78.57	uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1BRY6	1.3e-18	84.13	uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of HG10004491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38465.1	3.1e-12	52.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004491.1	HG10004491.1	mRNA