HG10004467 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004467
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr08: 17348472 .. 17350185 (+)
RNA-Seq Expression	HG10004467
Synteny	HG10004467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTAAATTTAGAGTCGATTTAGATTGACTTGAAAAAAAAAAAATTTTTTATTTAAAATGACTTATTGAAGATTACTTGTACCATCAGTGAGGATTATTGAAAATTCAAGATCGTACTTGCATTCAAGTCTAGATTGAACTCACAATCTCTTAGTCATTTATTGAGATTATATCTCTTTTTTACCGTTAACCTAACCTATGATGGTTTTGAGACTAAGAAAAATTTCATTTTAAAATTTATTAAAAAGCATAAGTAAATTTAGACATTTCAAAGCAAAGAGACAAATGTGTGATGACTTATTTATAATTTATAAGAGTTAAAATTATCAATAGGATGACAACAAAATTTTAAAAATTATAGAAATTAAATCGAAACTAAGTTAAAAAAATATGAATGCCAAATTTAAAATTTTTAACATTTGAAATAATTATTATTATTTTTATTTTTTTAAATTAAGCTTATTTTCACACAAAGTTTCTACTTTCCTTAAAACACATTTGAATTACATATTTTTTTTTAGTTTTAAAAATTTGAATTATTTTGTTTAATATAATGCTTTAAAATGAAGTAATAAAAGAAAATTAAAAACGATATTGAAATTTAACCAAATTGTTAGGGTGTGGAGCAAAGTCATTTTTATTTGTTTGTTTATATTTTATTTCTTCAGACAAAAGAAATTGAGTTTGCTAAGCTAATCTCCCTCTTTCTTTCTTCTTCCTTTTCGCATCCTTCACTCTGTTTCTCTCTCTCTGTCTCAACATTCTGAGCTCTTCCAGAGCTCCCTCTGCCATGGCGGTTACAATTAGCAGAAAACTTTTCCCTGTTGCTACTGGAACTACCCAACCAAACACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTTGACTGCTACGGTATTCCAGATTTCTACTTCTCACCGCCGCCGCCGCCGCCCCCGCCTACACTCACCGATCACCAAAAACAGCTTCCAACTATAATCATCATCCTAATTCTGTTCGTAGGATTTTTCATCGCTTTTAGTTTCTATATCATCGTCGTAAAATGCCGATCTTGGCAAAGTGGCTCCGGCAACGAAGGGACAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAATCGACCATCCAATTTGGTTCATCACCACCGTTGGACTGCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGGTGTGTTGATACTTGGCTCAGAACTCATACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACCGATTTCACGAACTCAAACTCTGCGAGGCCACCCAATTTAGGCCCTGTGAATCAAAACGAAGCTAATTTGAGTGTAAATGAGGAAACCCAGATGGAGAATGATGAGATTAATGGCGAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATCTTCAGATTGGGGAGATAGTTCCAAAAGAAGGGAATTTTGAATCTGATGAATCTAAAGTTGAAGGAAACGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAGCAACATGA

mRNA sequence

ATGAGAGATTTCTACTTCTCACCGCCGCCGCCGCCGCCCCCGCCTACACTCACCGATCACCAAAAACAGCTTCCAACTATAATCATCATCCTAATTCTGTTCGTAGGATTTTTCATCGCTTTTAGTTTCTATATCATCGTCGTAAAATGCCGATCTTGGCAAAGTGGCTCCGGCAACGAAGGGACAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAATCGACCATCCAATTTGGTTCATCACCACCGTTGGACTGCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGGTGTGTTGATACTTGGCTCAGAACTCATACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACCGATTTCACGAACTCAAACTCTGCGAGGCCACCCAATTTAGGCCCTGTGAATCAAAACGAAGCTAATTTGAGTGTAAATGAGGAAACCCAGATGGAGAATGATGAGATTAATGGCGAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATCTTCAGATTGGGGAGATAGTTCCAAAAGAAGGGAATTTTGAATCTGATGAATCTAAAGTTGAAGGAAACGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAGCAACATGA

Coding sequence (CDS)

ATGAGAGATTTCTACTTCTCACCGCCGCCGCCGCCGCCCCCGCCTACACTCACCGATCACCAAAAACAGCTTCCAACTATAATCATCATCCTAATTCTGTTCGTAGGATTTTTCATCGCTTTTAGTTTCTATATCATCGTCGTAAAATGCCGATCTTGGCAAAGTGGCTCCGGCAACGAAGGGACAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAATCGACCATCCAATTTGGTTCATCACCACCGTTGGACTGCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGGTGTGTTGATACTTGGCTCAGAACTCATACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACCGATTTCACGAACTCAAACTCTGCGAGGCCACCCAATTTAGGCCCTGTGAATCAAAACGAAGCTAATTTGAGTGTAAATGAGGAAACCCAGATGGAGAATGATGAGATTAATGGCGAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATCTTCAGATTGGGGAGATAGTTCCAAAAGAAGGGAATTTTGAATCTGATGAATCTAAAGTTGAAGGAAACGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAGCAACATGA

Protein sequence

MRDFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGTEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPKEGNFESDESKVEGNESMRNNEMDSSSAT

Homology

[Close]

BLAST of HG10004467 vs. NCBI nr
Match: XP_038884462.1 (RING-H2 finger protein ATL54-like [Benincasa hispida])

HSP 1 Score: 453.4 bits (1165), Expect = 1.4e-123
Identity = 232/267 (86.89%), Postives = 243/267 (91.01%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           DFY+S PPPPPP  L DHQKQLPT+IIIL+LFVGFFIAFSFYIIVVKCRSWQSGSGNEGT
Sbjct: 39  DFYYSQPPPPPP--LADHQKQLPTLIIILLLFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGT+CSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTECSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVNQ 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT SNS RPPNLGPVNQ
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTASNSVRPPNLGPVNQ 218

Query: 183 NEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPKE 242
           NEANL VNEETQMEN+EINGEVLVENEGVVS G+ ENRGDVVDEQREVG +Q        
Sbjct: 219 NEANLGVNEETQMENEEINGEVLVENEGVVSRGNFENRGDVVDEQREVGIVQ-------- 278

Query: 243 GNFESDESKVEGNESMRNNEMDSSSAT 270
               +D+SKVEGNES RNN+MDSSSAT
Sbjct: 279 ----TDDSKVEGNESTRNNQMDSSSAT 291

[Close]

BLAST of HG10004467 vs. NCBI nr
Match: XP_008444871.1 (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo] >KAA0065127.1 RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 1.1e-117
Identity = 229/273 (83.88%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           D YFSPPPPPPP  L DHQKQLPT+II+LILFV FFIAF+FYIIVVKCRSW SGSGNEG 
Sbjct: 39  DLYFSPPPPPPP--LFDHQKQLPTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGA 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGTDCSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT--NSNSARPPNLGPV 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT  NSNS RPPNLGP+
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPL 218

Query: 183 NQNEANLSVNEETQMENDEINGEVLVENEG---VVSSGSSENRGDVVDEQREVGDLQIGE 242
           NQNE NL +NE+TQMEN+ INGE + ENEG    +SS SSENRGDVVDEQREV      E
Sbjct: 219 NQNEGNLGLNEDTQMENENINGEAVRENEGGVVSISSESSENRGDVVDEQREV-----EE 278

Query: 243 IVPKEGNFESDESKVEGNESMRN-NEMDSSSAT 270
           IV KEGNFESD+SKVEGNES RN N M SSS T
Sbjct: 279 IVQKEGNFESDDSKVEGNESTRNDNRMYSSSTT 304

[Close]

BLAST of HG10004467 vs. NCBI nr
Match: XP_011649673.1 (RING-H2 finger protein ATL54 [Cucumis sativus] >KGN62717.1 hypothetical protein Csa_022380 [Cucumis sativus])

HSP 1 Score: 429.9 bits (1104), Expect = 1.7e-116
Identity = 222/271 (81.92%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           D YFSPPPPPPP  L+DHQKQLPT IIILILF+ FF+AF+FYIIVVKCRSW SGS NEG 
Sbjct: 39  DLYFSPPPPPPP--LSDHQKQLPTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGA 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGTDCSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVNQ 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT  NS RPPN+GP+NQ
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQ 218

Query: 183 NEANLSVNEETQMENDEINGEVLVENEG---VVSSGSSENRGDVVDEQREVGDLQIGEIV 242
           NE NL +NE+TQMEN+  N E + ENEG    +SS SSENRGD VDEQREV      EIV
Sbjct: 219 NEGNLGLNEDTQMENENTNREAVRENEGGGVSISSESSENRGDAVDEQREV-----EEIV 278

Query: 243 PKEGNFESDESKVEGNESMRN-NEMDSSSAT 270
            KEGNFESD+SKVEGNESMRN N+M+SSS T
Sbjct: 279 QKEGNFESDDSKVEGNESMRNDNQMNSSSTT 302

[Close]

BLAST of HG10004467 vs. NCBI nr
Match: XP_023546737.1 (RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.4 bits (986), Expect = 8.0e-103
Identity = 202/268 (75.37%), Postives = 222/268 (82.84%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTI-IIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEG 62
           DFYFSPPPPPPP    DHQKQLPTI I+IL LFVGFF  FSFYIIVVKC++W+SGSGN+G
Sbjct: 39  DFYFSPPPPPPP--FDDHQKQLPTIVIVILALFVGFFFTFSFYIIVVKCQAWRSGSGNQG 98

Query: 63  TEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCL 122
            E  Q DG +GEF+NENQ+DHPIWFITTVGLQQS+INSITVCKYKK EGLIEGT CSVCL
Sbjct: 99  AETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCL 158

Query: 123 SEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVN 182
           +EFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF  SN+ARPPN G +N
Sbjct: 159 NEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNTARPPNSGHLN 218

Query: 183 QNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPK 242
           QNEANL V EETQMEN  + GE   E   V   G  ENRGD VDEQR++G   IGEIVPK
Sbjct: 219 QNEANLVVIEETQMEN--LEGE---EQSAVSGGGGVENRGDAVDEQRDIGVPPIGEIVPK 278

Query: 243 EGNFESDESKVEGNESMRNNEMDSSSAT 270
           EG FESD+SK+E NE+M    M+ SSAT
Sbjct: 279 EGVFESDDSKMEVNETM----MNCSSAT 295

[Close]

BLAST of HG10004467 vs. NCBI nr
Match: KAG6598705.1 (RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.9 bits (982), Expect = 2.3e-102
Identity = 199/268 (74.25%), Postives = 221/268 (82.46%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTI-IIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEG 62
           DFYFSPPPPPP P   DHQKQLPTI I+IL LFVGFF  FSFYII+VKC++W+SGSGN+G
Sbjct: 39  DFYFSPPPPPPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQG 98

Query: 63  TEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCL 122
            EA Q +G +GEF+NENQ+DHPIWFITTVGLQQS+INSITVCKYKK EGLIEGT CSVCL
Sbjct: 99  AEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCL 158

Query: 123 SEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVN 182
           +EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF  SN+ARPPN G +N
Sbjct: 159 NEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLN 218

Query: 183 QNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPK 242
           QNEANL V +ETQMEN  + GE   E   V   G  ENRGD VDEQR++G  QIGEI PK
Sbjct: 219 QNEANLGVIQETQMEN--LEGE---EQSAVSGGGGVENRGDAVDEQRDIGVPQIGEIAPK 278

Query: 243 EGNFESDESKVEGNESMRNNEMDSSSAT 270
           EG FESD+SK+E  E+     M+ SSAT
Sbjct: 279 EGVFESDDSKMEVTET----TMNCSSAT 297

[Close]

BLAST of HG10004467 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.7e-36
Identity = 81/159 (50.94%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 8   PPPPPPPPTLTDHQKQLPTIIII---LILFVGFFIAFSFYIIVVKCRSWQSGSGNEGTEA 67
           PPPPPPPP   +    LPT I +   +ILF+  F+ F  Y+ + + R   + S   G   
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFL--FLVFFLYLHITQQRRISAASVTPGDTN 85

Query: 68  LQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEF 127
            Q D  E E  + +   H +W I TVGL +S INSITV  +KK EG+I+GT+CSVCL+EF
Sbjct: 86  QQEDEDETEERDFSDFHH-VWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEF 145

Query: 128 QEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 164
           +EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 146 EEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of HG10004467 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-35
Identity = 106/265 (40.00%), Postives = 140/265 (52.83%), Query Frame = 0


Query: 7   SPPPPP-PPPTLT-------DHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSG 66
           SP P P P P+++       D    L  I II I      I  + + +V K  S      
Sbjct: 55  SPQPSPCPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRV 114

Query: 67  NEGTEALQSDGG----EGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEG 126
           N+GT    ++      E EF +  Q+DHPIW I T GLQQS+INSIT+C YK+ +GLIE 
Sbjct: 115 NQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIER 174

Query: 127 TDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARP 186
           TDC VCL+EF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I       +   P
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI----AMISVTTP 234

Query: 187 PNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQ 246
              GPV            + +END ++ E           G  ENR D   ++ +  D++
Sbjct: 235 RYSGPVEVTPG----GSGSHLENDGVDEE---------DHGEIENRVDSDFKESDDSDIR 294

Query: 247 IGEIVPKEGNFESDESKVEGNESMR 260
           I EI   +   + D S+ E  E +R
Sbjct: 295 I-EIYRFDS--DGDGSETETKERVR 299

[Close]

BLAST of HG10004467 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-26
Identity = 86/246 (34.96%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 5   YFSPPPPPPPPTLTDHQKQ-----LPTIIIILILFVGFFIAFSFYIIVVK-CRSWQSGSG 64
           Y   PPPPP   L D          P +I ++ +     I  S+Y ++ K C      S 
Sbjct: 31  YLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSS 90

Query: 65  NEGTEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCS 124
           +E      +  GEG F +  +I          GL +S+I SITV KYK  +G ++G+DCS
Sbjct: 91  SETLNL--NHNGEGFFSSTQRIS-----TNGDGLNESMIKSITVYKYKSGDGFVDGSDCS 150

Query: 125 VCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLG 184
           VCLSEF+E+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA + T   N  ++   N+ 
Sbjct: 151 VCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV-TGVNNPTASVGQNVS 210

Query: 185 PVNQNEANL-----SVNEET------QMENDEINGEVLVENEGVVSSGS-SENRGDVVDE 233
            V  N++N      SV+E        + +  + +  V++E+  + S  S + +   + +E
Sbjct: 211 VVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSELQLPEE 268

[Close]

BLAST of HG10004467 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-25
Identity = 89/257 (34.63%), Postives = 123/257 (47.86%), Query Frame = 0


Query: 10  PPPPPPTLTDHQKQ-----LPTIIIILILFVGFFIAFSFYIIVVK-CRSWQSGSGNEGTE 69
           PPPP   L D          P +I ++ +    FI  S+Y ++ K C   +  S +    
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 70  ALQSDGGEGEFM-----NENQIDHPIWFI---TTVGLQQSVINSITVCKYKKSEGLIEGT 129
           A+     +  +      N N   +P   I      GL +S+I SITV KY+K +G +E +
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESS 157

Query: 130 DCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILT-------DFTN 189
           DCSVCLSEFQE+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA I+T       D TN
Sbjct: 158 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTN 217

Query: 190 -------------SNSARPPNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSG 233
                         +S    NL   N    N +VNE +  +  E+      E     S  
Sbjct: 218 QQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASLN 277

[Close]

BLAST of HG10004467 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-24
Identity = 82/254 (32.28%), Postives = 120/254 (47.24%), Query Frame = 0


Query: 5   YFSPPPPPP---PPTLTDHQKQ---LPTIIIILILFVGFFIAFSFYIIVVK-CRSWQS-- 64
           YF  PPPPP     T  D        P +I I+ +    F+  S+Y  + K C +  S  
Sbjct: 31  YFIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLR 90

Query: 65  ----GSGNEGTEALQSDGGEGEFMNENQIDHPIWFIT-TVGLQQSVINSITVCKYKKSEG 124
               GS + G       G  G   +     H  W ++   GL +++IN ITVCKY++ +G
Sbjct: 91  GRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDG 150

Query: 125 LIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSN 184
            +  TDCSVCL EF + E LRLLP+CSHAFH  C+DTWL++H+ CPLCRA+I        
Sbjct: 151 FVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLA 210

Query: 185 SARPPNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREV 244
           S  P    P    E       E  +  D +      + E V  + ++++  D  D    +
Sbjct: 211 SPEPEGCAP---GETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADDDHDAKDVAEGM 270

[Close]

BLAST of HG10004467 vs. ExPASy TrEMBL
Match: A0A5A7VDK2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004620 PE=3 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.5e-118
Identity = 229/273 (83.88%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           D YFSPPPPPPP  L DHQKQLPT+II+LILFV FFIAF+FYIIVVKCRSW SGSGNEG 
Sbjct: 39  DLYFSPPPPPPP--LFDHQKQLPTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGA 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGTDCSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT--NSNSARPPNLGPV 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT  NSNS RPPNLGP+
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPL 218

Query: 183 NQNEANLSVNEETQMENDEINGEVLVENEG---VVSSGSSENRGDVVDEQREVGDLQIGE 242
           NQNE NL +NE+TQMEN+ INGE + ENEG    +SS SSENRGDVVDEQREV      E
Sbjct: 219 NQNEGNLGLNEDTQMENENINGEAVRENEGGVVSISSESSENRGDVVDEQREV-----EE 278

Query: 243 IVPKEGNFESDESKVEGNESMRN-NEMDSSSAT 270
           IV KEGNFESD+SKVEGNES RN N M SSS T
Sbjct: 279 IVQKEGNFESDDSKVEGNESTRNDNRMYSSSTT 304

[Close]

BLAST of HG10004467 vs. ExPASy TrEMBL
Match: A0A1S3BAW8 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.5e-118
Identity = 229/273 (83.88%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           D YFSPPPPPPP  L DHQKQLPT+II+LILFV FFIAF+FYIIVVKCRSW SGSGNEG 
Sbjct: 39  DLYFSPPPPPPP--LFDHQKQLPTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGA 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGTDCSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT--NSNSARPPNLGPV 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT  NSNS RPPNLGP+
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPL 218

Query: 183 NQNEANLSVNEETQMENDEINGEVLVENEG---VVSSGSSENRGDVVDEQREVGDLQIGE 242
           NQNE NL +NE+TQMEN+ INGE + ENEG    +SS SSENRGDVVDEQREV      E
Sbjct: 219 NQNEGNLGLNEDTQMENENINGEAVRENEGGVVSISSESSENRGDVVDEQREV-----EE 278

Query: 243 IVPKEGNFESDESKVEGNESMRN-NEMDSSSAT 270
           IV KEGNFESD+SKVEGNES RN N M SSS T
Sbjct: 279 IVQKEGNFESDDSKVEGNESTRNDNRMYSSSTT 304

[Close]

BLAST of HG10004467 vs. ExPASy TrEMBL
Match: A0A0A0LPJ4 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE=3 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 8.0e-117
Identity = 222/271 (81.92%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGT 62
           D YFSPPPPPPP  L+DHQKQLPT IIILILF+ FF+AF+FYIIVVKCRSW SGS NEG 
Sbjct: 39  DLYFSPPPPPPP--LSDHQKQLPTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGA 98

Query: 63  EALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 122
           EALQSDGGEGEFMNENQ+DHPIWFITT GLQQSVINSITVCKYKKSEGLIEGTDCSVCLS
Sbjct: 99  EALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLS 158

Query: 123 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVNQ 182
           EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFT  NS RPPN+GP+NQ
Sbjct: 159 EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQ 218

Query: 183 NEANLSVNEETQMENDEINGEVLVENEG---VVSSGSSENRGDVVDEQREVGDLQIGEIV 242
           NE NL +NE+TQMEN+  N E + ENEG    +SS SSENRGD VDEQREV      EIV
Sbjct: 219 NEGNLGLNEDTQMENENTNREAVRENEGGGVSISSESSENRGDAVDEQREV-----EEIV 278

Query: 243 PKEGNFESDESKVEGNESMRN-NEMDSSSAT 270
            KEGNFESD+SKVEGNESMRN N+M+SSS T
Sbjct: 279 QKEGNFESDDSKVEGNESMRNDNQMNSSSTT 302

[Close]

BLAST of HG10004467 vs. ExPASy TrEMBL
Match: A0A6J1HEB6 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111462708 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 4.3e-102
Identity = 200/268 (74.63%), Postives = 221/268 (82.46%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTI-IIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEG 62
           DFYFSPPPP P P   DHQKQLPTI I+IL LFVGFF  FSFYII+VKC++W+SGSGN+G
Sbjct: 39  DFYFSPPPPLPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQG 98

Query: 63  TEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCL 122
            EA Q +G +GEF+NENQ+DHPIWFITTVGLQQS+INSITVCKYKK EGLIEGT CSVCL
Sbjct: 99  AEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCL 158

Query: 123 SEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVN 182
           +EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF  SN+ARPPN G +N
Sbjct: 159 NEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLN 218

Query: 183 QNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPK 242
           QNEANL V EETQMEN  + GE   E   V   G  ENRGD V EQR++G  QIGEIVPK
Sbjct: 219 QNEANLGVIEETQMEN--LEGE---EQSAVSGGGGVENRGDAVYEQRDIGVPQIGEIVPK 278

Query: 243 EGNFESDESKVEGNESMRNNEMDSSSAT 270
           EG FESD+SK+E  E+M    M+ SSAT
Sbjct: 279 EGVFESDDSKMEVTETM----MNCSSAT 297

[Close]

BLAST of HG10004467 vs. ExPASy TrEMBL
Match: A0A6J1K4G1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 6.2e-101
Identity = 201/268 (75.00%), Postives = 219/268 (81.72%), Query Frame = 0


Query: 3   DFYFSPPPPPPPPTLTDHQKQLPTI-IIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEG 62
           DFYFSPPPP       DHQKQLPTI I+IL LFVGFF  FSFYII+VK ++W+SGSGN+G
Sbjct: 39  DFYFSPPPP-----FGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKWQAWRSGSGNQG 98

Query: 63  TEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCL 122
            EA Q DG +GEF+NENQ+DHPIWFITTVGLQQS+INSITVCKYKK EGLIEGT CSVCL
Sbjct: 99  AEASQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCL 158

Query: 123 SEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVN 182
           +EFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF  SN  RPPN G VN
Sbjct: 159 NEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFATSNFPRPPNSGHVN 218

Query: 183 QNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPK 242
           QNEANL+V EETQMEN  + GE   E   V   G  ENRGD VDEQR+VG  QIGEIVPK
Sbjct: 219 QNEANLAVIEETQMEN--LEGE---EQSAVSGGGGVENRGDAVDEQRDVGVPQIGEIVPK 278

Query: 243 EGNFESDESKVEGNESMRNNEMDSSSAT 270
           EG FESD+SK+E NE+M    M+ SSAT
Sbjct: 279 EGVFESDDSKMEVNETM----MNCSSAT 292

[Close]

BLAST of HG10004467 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 4.7e-37
Identity = 81/159 (50.94%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 8   PPPPPPPPTLTDHQKQLPTIIII---LILFVGFFIAFSFYIIVVKCRSWQSGSGNEGTEA 67
           PPPPPPPP   +    LPT I +   +ILF+  F+ F  Y+ + + R   + S   G   
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFL--FLVFFLYLHITQQRRISAASVTPGDTN 85

Query: 68  LQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEF 127
            Q D  E E  + +   H +W I TVGL +S INSITV  +KK EG+I+GT+CSVCL+EF
Sbjct: 86  QQEDEDETEERDFSDFHH-VWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEF 145

Query: 128 QEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 164
           +EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 146 EEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of HG10004467 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-36
Identity = 106/265 (40.00%), Postives = 140/265 (52.83%), Query Frame = 0


Query: 7   SPPPPP-PPPTLT-------DHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSG 66
           SP P P P P+++       D    L  I II I      I  + + +V K  S      
Sbjct: 55  SPQPSPCPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRV 114

Query: 67  NEGTEALQSDGG----EGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEG 126
           N+GT    ++      E EF +  Q+DHPIW I T GLQQS+INSIT+C YK+ +GLIE 
Sbjct: 115 NQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIER 174

Query: 127 TDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARP 186
           TDC VCL+EF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I       +   P
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI----AMISVTTP 234

Query: 187 PNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQ 246
              GPV            + +END ++ E           G  ENR D   ++ +  D++
Sbjct: 235 RYSGPVEVTPG----GSGSHLENDGVDEE---------DHGEIENRVDSDFKESDDSDIR 294

Query: 247 IGEIVPKEGNFESDESKVEGNESMR 260
           I EI   +   + D S+ E  E +R
Sbjct: 295 I-EIYRFDS--DGDGSETETKERVR 299

[Close]

BLAST of HG10004467 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-32
Identity = 87/218 (39.91%), Postives = 114/218 (52.29%), Query Frame = 0


Query: 14  PPTLTDHQKQLPTIIII--------LILFVGFFIAFSFYI----IVVKCRSWQSGSGNEG 73
           PP    H   L  I+II        L L     + F FY      +   R W      E 
Sbjct: 111 PPAEIHHDDNLKRILIISASSIITTLFLLTLLVLCFKFYYRRRRSITTSRRWSM----EE 170

Query: 74  TEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCL 133
                 DG          +DHPIW I T+GL  +VI+SI VC+Y K +G++EGTDCSVCL
Sbjct: 171 ARNWDFDGPAPVI-----VDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCL 230

Query: 134 SEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVN 193
           SEF+E+E LRLLPKC HAFH+ C+DTWLR+HT CPLCRA I+   T  +           
Sbjct: 231 SEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPIVEANTMIDDHSE------G 290

Query: 194 QNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSEN 220
             E ++ + EE   + DE   E+  E +G VS+ S ++
Sbjct: 291 LEEISVMIPEENGDDTDE---EIEEERDGFVSNISRDH 310

[Close]

BLAST of HG10004467 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-27
Identity = 86/246 (34.96%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 5   YFSPPPPPPPPTLTDHQKQ-----LPTIIIILILFVGFFIAFSFYIIVVK-CRSWQSGSG 64
           Y   PPPPP   L D          P +I ++ +     I  S+Y ++ K C      S 
Sbjct: 31  YLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSS 90

Query: 65  NEGTEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCS 124
           +E      +  GEG F +  +I          GL +S+I SITV KYK  +G ++G+DCS
Sbjct: 91  SETLNL--NHNGEGFFSSTQRIS-----TNGDGLNESMIKSITVYKYKSGDGFVDGSDCS 150

Query: 125 VCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLG 184
           VCLSEF+E+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA + T   N  ++   N+ 
Sbjct: 151 VCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV-TGVNNPTASVGQNVS 210

Query: 185 PVNQNEANL-----SVNEET------QMENDEINGEVLVENEGVVSSGS-SENRGDVVDE 233
            V  N++N      SV+E        + +  + +  V++E+  + S  S + +   + +E
Sbjct: 211 VVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSELQLPEE 268

[Close]

BLAST of HG10004467 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-27
Identity = 89/257 (34.63%), Postives = 123/257 (47.86%), Query Frame = 0


Query: 10  PPPPPPTLTDHQKQ-----LPTIIIILILFVGFFIAFSFYIIVVK-CRSWQSGSGNEGTE 69
           PPPP   L D          P +I ++ +    FI  S+Y ++ K C   +  S +    
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 70  ALQSDGGEGEFM-----NENQIDHPIWFI---TTVGLQQSVINSITVCKYKKSEGLIEGT 129
           A+     +  +      N N   +P   I      GL +S+I SITV KY+K +G +E +
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESS 157

Query: 130 DCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILT-------DFTN 189
           DCSVCLSEFQE+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA I+T       D TN
Sbjct: 158 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTN 217

Query: 190 -------------SNSARPPNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSG 233
                         +S    NL   N    N +VNE +  +  E+      E     S  
Sbjct: 218 QQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASLN 277

The following BLAST results are available for this feature:

BLAST of HG10004467 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884462.1	1.4e-123	86.89	RING-H2 finger protein ATL54-like [Benincasa hispida]	[more]
XP_008444871.1	1.1e-117	83.88	PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo] >KAA0065127.1 RING-H...	[more]
XP_011649673.1	1.7e-116	81.92	RING-H2 finger protein ATL54 [Cucumis sativus] >KGN62717.1 hypothetical protein ...	[more]
XP_023546737.1	8.0e-103	75.37	RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo]	[more]
KAG6598705.1	2.3e-102	74.25	RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10004467 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	6.7e-36	50.94	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q8LFY8	1.9e-35	40.00	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9LF64	2.8e-26	34.96	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	1.4e-25	34.63	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q7XLY8	2.0e-24	32.28	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of HG10004467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDK2	5.5e-118	83.88	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3BAW8	5.5e-118	83.88	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 ...	[more]
A0A0A0LPJ4	8.0e-117	81.92	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE...	[more]
A0A6J1HEB6	4.3e-102	74.63	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111462708...	[more]
A0A6J1K4G1	6.2e-101	75.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 P...	[more]

BLAST of HG10004467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	4.7e-37	50.94	RING/U-box superfamily protein	[more]
AT1G72220.1	1.4e-36	40.00	RING/U-box superfamily protein	[more]
AT4G33565.1	2.1e-32	39.91	RING/U-box superfamily protein	[more]
AT5G17600.1	2.0e-27	34.96	RING/U-box superfamily protein	[more]
AT3G03550.1	9.9e-27	34.63	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..158 e-value: 1.1E-6 score: 38.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 116..159 e-value: 2.2E-13 score: 50.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 117..159 score: 12.740079
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 113..167 e-value: 0.0097 score: -1.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..258
None	No IPR available	PANTHER	PTHR45676:SF121	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 3..268
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 116..159 e-value: 3.62332E-20 score: 79.2681
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 107..166
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 91..167 e-value: 9.0E-22 score: 78.1
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 3..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004467.1	HG10004467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane