HG10004451 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004451
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein 38-like
Location	Chr08: 17195400 .. 17199651 (+)
RNA-Seq Expression	HG10004451
Synteny	HG10004451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTAAGTTCCCTTTCCCTTAATTTTCATTTTTTTTTTTTTAATTTTGTGTTGTTTTAACTTCTAATTTAATTTAATTAATTAATTTAGGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGTGATCTCCCCGATTAAACTGAAATTAACTTCACTAAATTTATTGATTAATTAATTAATAAATCAATTAACTTTTTTTTTTTTTGCTCGATTCTAATAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGTATATGGGCTAGCTATTCTTAAAATTCCCAGAAATGTTGAGCTGTAAATGAAAAAAAAATAAAAATAAAAATAGAATCGGCTGGTTGGTTGCATGGTCCTGCCATAGGCAACAGTATTTTCGATGGTGACAATGTTTTAAGGAAAAACAATTTACCTCGACAAGAAGTCAAATGCCTGTCCAATTTCAGAAGGAAAAAAAAAAAAAAAAGCTTCGTCTTATCCATTTCTATTATTATTATTCTTATTCTTATTATTTATTTTTTGTTTTGCTTCTTTTTGCAGATACCGATCCTACGCCCCAAATTACCACCAAGTTAGTTTTCTCTCTTAATTTTCAGTTATTATTTTCTTTTTTTGAATTTCGCTTTTTAAAACGTCTATTTTAGTCATTTAACTAGAAAATATCTTGATCTTTACATTTATTTTGTTTTTCAACCCTATACGGTTTTATTTTTGGTATTTTTTTTTTTAAATTAAGCTAACAAAACTTCCATGTATTGGTTTCTATATTTTTGTTGTTTACTATAAATATTTTCAAAATCAAACCCAAGACATTTGAAAACTAAAAAAAAATGTCATTTTCAAAAATATTTTTAAAAATGAACTAAAAATTCACAAATGCTTATATAGGAAATGTGAAAACATGAATAAGAAGTCAGAAAGTGTGTGAAGAGTTGACAAACACAATTTTCAAAAATAAAAATTAAATGATTATTCAACGAACTTTAATGACACAATTTTGAGTATGTGTACTAACATGTCAATATGAGAATACAAGTATTTACGAATTTAGATATTGATGAAAAGATAATACAACGATCTCAACAATCAAAATCATTAGTTATCTTATCTAACTAGTGACGAAAATGGAAGTATCTTAAATAGTAATTAAAGCCAATTAGAATTAAAGGTTGAAAAATTGAGTTAAAATGGTTGTGCAGGCTATTTATAATCCACAGCTTCAACAACCACAATTGTACCAGCAATCACCATCTTCTTCTTCATATTACTATGGCTATGGCTATGGCTATTCTTCTTCATCTTCACAGCCTCCAAGAGGAGCATTTTCAGTACATGGCCATACCCCTTCTTCACCATTATCATCATCACCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTAAATTATAATTATTATATATATATATATATATATATATAATCATCATCATCATATTTATTATACTCTTTTAATTGCATGTGACATTATATATATTATATCTATATGAAATAATAATGAACATCTGATAATGATTATTATGAGATGAAATTTGATTAGAATTATAGGGAGGGGAATTTTGGGTTATTGTCTTTGGGTTTGAAAGGGAGGCACATGGGTTAAGCCTGAGGCCATGTGAGGAATGAGCTGTCTAATATACCCCATGAAAATAGGTGAATGGAAAGTCCTGACAGATTGGAATCACCAACATAAATAGTGACTTCCACTTTTTTTTTTTTTTCCCATTCTTAATTCCAAGTCATTGGTTTGTGCGTGTATATATATATAAAGTTTGAAATTATTTCTTAAAAAAAATTAATAACAATAAAGTTGGATTACAAGTTTAATGAAAAATATTTAAGTTTGTGTCTATTTGATTTATATATAGAAACTAAATGGGGTGGAAGTAAAGTAGTATTTATTAAGCTTAATTTTAAAAAATCAAATGTTTATTAGATGAAATCTAAATTTTCAAGTTTGTGTCTATTTGGCCCATAAACTTTAAGAAGTGTGAAATTGTTCCTCAAACTTTCAGTTTTGTATCTTAAAATTTTAATTTTGAGTGAATTATTTGATGTTTAGAAAAATAAAAACTACTAGACACTAAATTAAAAGTTTAGAGATCTATTAGGCATAAAATTGAATTTTATATATAACCTTTCATATAATTTATAAAAATTTTGTATATGTATCAAGGGCTTGTTAGACATTTTTAAAGTTTAGGGTTCTTTTAGACAAAAAAAAAAAAAAAAAAAAAAATTAAAAGTTCATAAATAGGTTGCATACTCTTTAAAGTTTTACTGATGTTTCAAAAATAAAATTTTGAAAGTTGAGACTTGAGAGACTAAATTTATAATTTTAATTTAATCAAATAATAATGAAGATCAAGTTATTTTTGGTGTCCAACTTCTGTAACTAATGGTTTTTAGAATGATGTTATTTTAAAGGATAAAATTGCTGAACACATTTATAAATATAGCATAATTTCACTGTCAATCTGCGACAGACCGGATAGACTGTAATAGACTACTATTTGTGTCGCGATAGACTACAGATAAACACAGATAATAGTCTATCGCGATCTATCGCAGATAGACAGTGAAATTTTGCTATATTTATAAATATTTTGGTTCATTTTTCTCTATTTGAAAACATCTCCTTTTTAAAAACGATATTTTTGTTTATTTTATAAAAACCCTATTTATATAGTAAAGTTCTTTTTAATGGTTATTTTGGTGCAGTTTGGTTTTTTAATGGAACACTTGCCATGAACAATAGGAATAAATACATTATAGGGGACTTTTTAAAAATAGAAAAATAAAAGAAATTATTTACACAAAATAGCAAAATTTTTTAAATAGTTGGATAGATGATGATAGAAGTCTATCAGAGTCTATCGGTGATAGAAATGATAGAAGTCTATCACTGATATATGTTGATAGAAGTCTATCAATGTCTATCAATGATTTTTTTGCTATTTTCTGTAAATAATTTGATATTTTTTCTATTTGTGAAAATTTTCCTACATTATAACATTTTAATATTTGAAATATGTAGTAGACATATATTAATCATTATAGCCTTATAAAAATATTCTAAAAATTATTGCACATAAAACACAATAAAAAAAAAATAAGGCAGAAAAAAAAATTATATTATTGTTGAGATATGGGATGTGAGTTGTTTGTAGGGTAATATCATGAAATTTAAAGTGTAAGACAAATGAAAATTCAGGCAGAGCTAGCTTTTCTATTATTCAATATAGCAGCTAGCTTTTTCCCCATGATTAAACATAACCAACAAAAACATACAGTAATTTTTTATATATATATTATTGTTGAATAATATTAAATCTATTCACTGATAAGATATGTTCTGTCGCTTTGAATATTAGCTTTAAATCCATGTATATTTAAAATATCAATTTTGGTTTCTATACCCTTATTCTTTCCTTTTTAATATCATTTTTATCTCATTTTTGTAATATAAATATTAACATGACACTTCCTTCACTAAATAATTTCTTAAGATGTAGTCATAAATTTGCATCATATATAAAGTTTACGCGTTTAAATTTTGAATTAATAGGATGTTTTGAAAGTAGTATATTATTTAAGCCTTAATAATACATTATGTTTCTGTTATTTATGTTTTTTTCCCTCTCAATTCTATGTGCATGCGTGTGGTTGTCTATTTAATTATAGGGGTGATCATCAGTCGATTGGCGTTGTTTTGAGACAAATCAACGTCAACCACCGACTTGTCGGTTTAGATAGGTCGGTGGTCGTCGATTGTGGGAAGGCTTATGAAACTGACTGA

mRNA sequence

ATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGGGTGATCATCAGTCGATTGGCGTTGTTTTGAGACAAATCAACGTCAACCACCGACTTGTCGGTTTAGATAGGTCGGTGGTCGTCGATTGTGGGAAGGCTTATGAAACTGACTGA

Coding sequence (CDS)

ATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGGGTGATCATCAGTCGATTGGCGTTGTTTTGAGACAAATCAACGTCAACCACCGACTTGTCGGTTTAGATAGGTCGGTGGTCGTCGATTGTGGGAAGGCTTATGAAACTGACTGA

Protein sequence

MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRPPFPPPQLIFPQYRGDHQSIGVVLRQINVNHRLVGLDRSVVVDCGKAYETD

Homology

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BLAST of HG10004451 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 4.2e-79
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MADNNNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
           QST PAAAGSYGGLRPPFPPPQLIFP YR
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPQLIFPHYR 149

[Close]

BLAST of HG10004451 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 1.6e-78
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
           QST+PAAAGSYGGLRPPFPPPQLIFP YR
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYR 149

[Close]

BLAST of HG10004451 vs. NCBI nr
Match: KAA0065144.1 (RNA-binding protein 38-like [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 6.1e-78
Identity = 140/149 (93.96%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
            ST+PAAAGSYGGLRPPFPPPQLIFP YR
Sbjct: 121 PSTSPAAAGSYGGLRPPFPPPQLIFPHYR 149

[Close]

BLAST of HG10004451 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 8.3e-75
Identity = 140/151 (92.72%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MADNNNFPLNHP-PPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHT 60
           MADNN+F LN P PPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  RKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGN 120
            KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPS GGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 LQSTT-PAAAGSYGGLRPPFPPPQLIFPQYR 150
           LQSTT PA AGSYGGLRPPFPPPQLIFPQYR
Sbjct: 121 LQSTTPPAVAGSYGGLRPPFPPPQLIFPQYR 151

[Close]

BLAST of HG10004451 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-57
Identity = 118/151 (78.15%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYR 150
            AAAGSYGGL  P+      PPPQ++FP YR
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYR 152

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BLAST of HG10004451 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-26
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DT  TK+FVGGLAW+T    M+  F ++GDILEAVII DK TR+SKGYGFVTFKD ++A 
Sbjct: 13  DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72

Query: 78  RACANPNPIICGRRANCNIAAFG---RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSY 132
           RAC +  PII GRRANCN+A+ G   R  P   SP  G +N  GN    TP   G++
Sbjct: 73  RACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN--RATPPHVGNH 125

[Close]

BLAST of HG10004451 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-21
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR   P  + G       +Q   PA        RP
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG-------VQQIHPALV-----QRP 125

Query: 138 PFPPPQLIFPQ 148
              P   ++PQ
Sbjct: 127 YGIPAHYVYPQ 125

[Close]

BLAST of HG10004451 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR   P  + G       +Q   PA        RP
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG-------VQQIHPALI-----QRP 125

Query: 138 PFPPPQLIFPQ 148
              P   ++PQ
Sbjct: 127 FGIPAHYVYPQ 125

[Close]

BLAST of HG10004451 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR   P  + G       +Q   PA        RP
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG-------VQQLHPALI-----QRP 125

Query: 138 PFPPPQLIFPQ 148
              P   ++PQ
Sbjct: 127 FGIPAHYVYPQ 125

[Close]

BLAST of HG10004451 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHG 113
           RAC +PNPII GR+AN N+A  G +PR   P  + G
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102

[Close]

BLAST of HG10004451 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.8e-79
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
           QST+PAAAGSYGGLRPPFPPPQLIFP YR
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYR 149

[Close]

BLAST of HG10004451 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 141/149 (94.63%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MADNNNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
           QST PAAAGSYGGLRPPFPPP LIFP YR
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYR 149

[Close]

BLAST of HG10004451 vs. ExPASy TrEMBL
Match: A0A5A7VCX7 (RNA-binding protein 38-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004800 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.0e-78
Identity = 140/149 (93.96%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYR 150
            ST+PAAAGSYGGLRPPFPPPQLIFP YR
Sbjct: 121 PSTSPAAAGSYGGLRPPFPPPQLIFPHYR 149

[Close]

BLAST of HG10004451 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.6e-58
Identity = 118/151 (78.15%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYR 150
            AAAGSYGGL  P+      PPPQ++FP YR
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYR 152

[Close]

BLAST of HG10004451 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.6e-58
Identity = 118/151 (78.15%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYR 150
            AAAGSYGGL  P+      PPPQ++FP YR
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYR 152

[Close]

BLAST of HG10004451 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-40
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+T KSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPQY 149
           +  P PP   PQL++P Y
Sbjct: 130 MAAPLPPAAAPQLMYPSY 142

[Close]

BLAST of HG10004451 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-40
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+T KSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPQY 149
           +  P PP   PQL++P Y
Sbjct: 130 MAAPLPPAAAPQLMYPSY 142

[Close]

BLAST of HG10004451 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-36
Identity = 77/131 (58.78%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWETQS  +   F+Q+G+ILEAV+I DK+T +SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPP---SPSHGGRNQ-----IGNLQSTTP 133
           E+ARRACA+P PII GRRANCN+A+ GRPRPP P    P+  GR +     IGN+Q    
Sbjct: 77  EAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRG 136

Query: 134 AAAGSYGGLRP 137
           +  G+Y   +P
Sbjct: 137 SLIGNYPYQQP 146

[Close]

BLAST of HG10004451 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 79/138 (57.25%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT TK+FVGGLAWET + EM  +F QFG+ILEAVII DK T KSKGYGFVTF+D 
Sbjct: 10  PF-GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDS 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP  P     GR Q G+          SY G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSTPR----GRGQGGSPSQYQGGGQSSYTG 129

Query: 134 LRPPF---PPPQLIFPQY 149
           +  P       QL++P Y
Sbjct: 130 MAAPVQQAAAAQLMYPSY 142

[Close]

BLAST of HG10004451 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-34
Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWETQS  +   F Q+GDILEAV+I DK+T +SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPP--------------PPSPSHGGRNQIGN 133
           E+ARRAC +P PII GRRANCN+A+ GR RPP              PPSP       +G+
Sbjct: 77  EAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP------YVGS 136

Query: 134 LQSTTPAAAGSYGGLRPP 138
           +QS      GS+   +PP
Sbjct: 137 VQSPRGLHFGSHPYHQPP 147

The following BLAST results are available for this feature:

BLAST of HG10004451 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152633.3	4.2e-79	95.30	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_008444844.1	1.6e-78	94.63	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
KAA0065144.1	6.1e-78	93.96	RNA-binding protein 38-like [Cucumis melo var. makuwa]	[more]
XP_038884547.1	8.3e-75	92.72	RNA-binding protein 38-like [Benincasa hispida]	[more]
XP_022961976.1	1.6e-57	78.15	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]

BLAST of HG10004451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	4.3e-26	55.56	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9I8B3	3.2e-21	45.04	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q6GQD3	5.5e-21	45.04	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q5ZMA3	5.5e-21	45.04	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
Q6P8A7	5.5e-21	53.13	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of HG10004451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	7.8e-79	94.63	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.0e-78	94.63	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A5A7VCX7	3.0e-78	93.96	RNA-binding protein 38-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A6J1HBU2	7.6e-58	78.15	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	7.6e-58	78.15	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]

BLAST of HG10004451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	5.4e-40	58.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	5.4e-40	58.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	3.6e-36	58.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.8e-35	57.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.2e-34	55.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..95 e-value: 1.7E-22 score: 90.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..82 e-value: 5.9E-17 score: 61.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..99 score: 15.562085
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..117 e-value: 3.3E-24 score: 87.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..128
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 17..148
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 22..97 e-value: 9.66756E-40 score: 128.117
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 17..148
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 14..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004451.1	HG10004451.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding