HG10004387 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004387
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 16532854 .. 16533177 (-)
RNA-Seq ExpressionHG10004387
SyntenyHG10004387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

mRNA sequence

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Coding sequence (CDS)

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Protein sequence

MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKRLSIDNNTCSFSSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQNIINKSG
Homology
BLAST of HG10004387 vs. NCBI nr
Match: KAE8647257.1 (hypothetical protein Csa_018305, partial [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 9.4e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 0

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

BLAST of HG10004387 vs. NCBI nr
Match: KAB1206573.1 (hypothetical protein CJ030_MR7G020458 [Morella rubra] >KAB1206574.1 hypothetical protein CJ030_MR7G020459 [Morella rubra])

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-13
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 8   ASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPS-CDGASKRLSIDNNTC 67
           ++EFPGFQT V HKDD VYR SL+RLQR AP PL L + ++ PS C+G  K     +++ 
Sbjct: 6   SAEFPGFQTCV-HKDDFVYRSSLSRLQRRAPSPLQLIKPSTVPSACNGPPKTFVGSSSSS 65

Query: 68  SFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
           S SS+ N  ++ +DPI LLSPL   SL ES YV E NI
Sbjct: 66  SSSSSMNPFYYSKDPIPLLSPLALPSLLESAYVQEGNI 102

BLAST of HG10004387 vs. NCBI nr
Match: PON64471.1 (hypothetical protein TorRG33x02_273200 [Trema orientale])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-11
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 5   GAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDN 64
           G  A +FPGFQT  AHKDD+V +RSL+RLQR AP PL L P++ S  SC G  K     +
Sbjct: 4   GCGADQFPGFQT-YAHKDDIVLKRSLSRLQRRAPCPLQLKPKVYS--SCHGGVKSQGSCS 63

Query: 65  NTCSFSSTSNAP-----FHCRDPIQLLSPLM--SLFESRYVIEQN 102
            + S SSTS++      +H +DPI LLSPL+  SL ES  + ++N
Sbjct: 64  KSSSPSSTSSSSSLSSFYHSKDPIPLLSPLVLPSLLESACIQQEN 105

BLAST of HG10004387 vs. NCBI nr
Match: XP_042979927.1 (uncharacterized protein LOC122310107 [Carya illinoinensis] >KAG2706907.1 hypothetical protein I3760_05G123700 [Carya illinoinensis] >KAG6654100.1 hypothetical protein CIPAW_05G122300 [Carya illinoinensis] >KAG6712790.1 hypothetical protein I3842_05G119400 [Carya illinoinensis])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-11
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 6   AAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNN 65
           ++ +EFPGFQT   HKDD V+ RSL+RLQR AP PL L P++ S  +C+GA+ +  +  +
Sbjct: 4   SSTAEFPGFQT--FHKDDFVFGRSLSRLQRRAPSPLQLKPKVPS--ACNGAAAKSFVGTS 63

Query: 66  TCSFSSTS----NAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
             S SS+S    N+ ++ +DPI LLSPL+  SL ES YV E N
Sbjct: 64  NSSSSSSSSSSLNSFYYSKDPIPLLSPLVSPSLLESAYVQEGN 102

BLAST of HG10004387 vs. NCBI nr
Match: XP_023873319.1 (uncharacterized protein LOC111985907 [Quercus suber])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-10
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLT-RLQRHAPHPLPL-PRLTSCPSCDGA-SK 60
           MED   +++EFPGFQT V HKDD V+ RSL+ RLQR AP PL L PR+ +  +C+GA + 
Sbjct: 1   MED---SSAEFPGFQTCV-HKDDFVFGRSLSRRLQRQAPCPLQLKPRVPT--ACNGAPNP 60

Query: 61  RLSIDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
            LS  N + S SS+ N+ +H ++PI LLSPL+  S  ES Y+ E N
Sbjct: 61  FLSGSNPSSSSSSSLNSFYHSKEPIPLLSPLVLPSFLESAYIQEGN 100

BLAST of HG10004387 vs. ExPASy TrEMBL
Match: A0A0A0KDQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.6e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 0

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

BLAST of HG10004387 vs. ExPASy TrEMBL
Match: A0A6A1V1J8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G020458 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 8   ASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPS-CDGASKRLSIDNNTC 67
           ++EFPGFQT V HKDD VYR SL+RLQR AP PL L + ++ PS C+G  K     +++ 
Sbjct: 6   SAEFPGFQTCV-HKDDFVYRSSLSRLQRRAPSPLQLIKPSTVPSACNGPPKTFVGSSSSS 65

Query: 68  SFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
           S SS+ N  ++ +DPI LLSPL   SL ES YV E NI
Sbjct: 66  SSSSSMNPFYYSKDPIPLLSPLALPSLLESAYVQEGNI 102

BLAST of HG10004387 vs. ExPASy TrEMBL
Match: A0A2P5CTY4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273200 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 5   GAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDN 64
           G  A +FPGFQT  AHKDD+V +RSL+RLQR AP PL L P++ S  SC G  K     +
Sbjct: 4   GCGADQFPGFQT-YAHKDDIVLKRSLSRLQRRAPCPLQLKPKVYS--SCHGGVKSQGSCS 63

Query: 65  NTCSFSSTSNAP-----FHCRDPIQLLSPLM--SLFESRYVIEQN 102
            + S SSTS++      +H +DPI LLSPL+  SL ES  + ++N
Sbjct: 64  KSSSPSSTSSSSSLSSFYHSKDPIPLLSPLVLPSLLESACIQQEN 105

BLAST of HG10004387 vs. ExPASy TrEMBL
Match: A0A2P6R2B2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437411 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKRLS 60
           MED G   +EFPGFQT  AHKDD ++RR L+RLQR AP+PL L +  +  + + +S   +
Sbjct: 1   MEDTG---TEFPGFQT-CAHKDDSIFRRRLSRLQRRAPYPLQLIKQPN--NNNASSSGCT 60

Query: 61  IDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
             +N  S SS ++  +  +DPI LLSPL+  SL ES Y+ + N
Sbjct: 61  SSSNNSSSSSLNSFIYQSKDPIPLLSPLVLPSLLESAYIQQVN 97

BLAST of HG10004387 vs. ExPASy TrEMBL
Match: A0A2I4H8F7 (uncharacterized protein LOC109014412 OS=Juglans regia OX=51240 GN=LOC109014412 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 6   AAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKR--LSID 65
           ++ +EFPGFQT   HKDD V+ RSL+RLQR AP PL L P++ S  +C+GA+ +  +   
Sbjct: 4   SSTAEFPGFQT--FHKDDFVFGRSLSRLQRRAPSPLQLKPKVPS--ACNGAAAKSFVGTS 63

Query: 66  NNTCSFSSTSNAPFHC--RDPIQLLSPLM--SLFESRYVIEQN 102
           N++ S SS+S   F+   +DPI LLSPL+  SL ES YV E N
Sbjct: 64  NSSSSTSSSSLNSFYYSNKDPIPLLSPLVLPSLLESAYVQEGN 102

BLAST of HG10004387 vs. TAIR 10
Match: AT1G69050.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 40/90 (44.44%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 1  MEDFGAAASEFPGFQTSVAHKDDVVYRRSLT-RLQRHAPHPLPLPRLTSCPSCDGASKRL 60
          MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP     PS +  S   
Sbjct: 1  MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLPPRPP-PSAEAPSTTT 60

Query: 61 SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM 90
           +  +T   + T        DPI LLSPL+
Sbjct: 61 GVSTSTFCQNGT--------DPIPLLSPLV 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647257.19.4e-3171.68hypothetical protein Csa_018305, partial [Cucumis sativus][more]
KAB1206573.14.0e-1353.06hypothetical protein CJ030_MR7G020458 [Morella rubra] >KAB1206574.1 hypothetical... [more]
PON64471.18.3e-1148.57hypothetical protein TorRG33x02_273200 [Trema orientale][more]
XP_042979927.18.3e-1148.54uncharacterized protein LOC122310107 [Carya illinoinensis] >KAG2706907.1 hypothe... [more]
XP_023873319.15.4e-1050.94uncharacterized protein LOC111985907 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ24.6e-3171.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1[more]
A0A6A1V1J81.9e-1353.06Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G020458 PE=4 SV=1[more]
A0A2P5CTY44.0e-1148.57Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273200 PE=4 SV... [more]
A0A2P6R2B24.4e-1045.63Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437411 PE=4... [more]
A0A2I4H8F74.4e-1049.51uncharacterized protein LOC109014412 OS=Juglans regia OX=51240 GN=LOC109014412 P... [more]
Match NameE-valueIdentityDescription
AT1G69050.11.8e-0844.44unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004387.1HG10004387.1mRNA