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HG10004249 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGTAATCTTCCTCTACTCTACTCTACTCATCTTCCTCTCCTTCTTTTAAATCCTATTTTCTTCCTTCTTCCATTACAGGATTCCCCATTCCTATCCGCTCAAGACTCCTTGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGGTAAAATCGCTCTCTCTTCTTCAATTGTTATCATTTTCTTGTTATCCTGTTCAATTTCAATGTTGTTTCGTTGGAATCCGAAAATTCAAATGCTCGTTCCTTCTGTTGGTTAGTTGTTGGGCGACCGGAGTTAAGAGACGAGAAATTATGCTGGGGATTGGATTGACTGCGTTTTCTTTTCAAGAAGTTGTTTCTAATGCCTTAGCTGAGAGTGGTACCGATTTGCCTTCTTCATCTCGAGCTTGTTATCAGAGATTATATTTTCCCCCTTTGGTATTGTTTTTATTTGAAGATTGAATGCGTTCAGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGTTCAAATTGGTGATTCCTCAAGGTGTGTGGCCTGAGATTTTTGTTTAGAGAATTAGAGATTAAACTGTGTTAATTAGTTGAACTTGTGCGATTTATGTAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGGTATTTTCTTACATTTTCTCTCACTCGCTTCAGTTTTGAATATTTTGATGGACTGAATTTTGGTTTAGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTATGACTTTCATACCATTTTGCAGTTTTTGAACCAAACAAGAAAGCCAAAACTGGTTCTCTTCTCTCGAAATTTCTTAATTAGAAAACGACAGCCGAAATTGGACCTCTTCTTTTTGCATTTTCTGTATGAAAAATGAAAGCCAAAATAGGGTCTCTTCCTTTTCAGTTTTTGAATGGACATAGATAGCCTAAATATAGATTTCCCTTTTCTCTTGATATATCTTTCAGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGTATGTAGCTGAAGAACAACCAGTGAACTCTGCATTTACAGAACCATAGTTAAAACTTGATGGAAACTTGTTTATAAACATTGTAAACATGAAACTTATTTGAGAAACCGTAATAGATTTTGTCCACTAGTTGTCTTGTTCGGTTAGGTGGAAATAAAGCCCCACGTTAATTAAGGAATAGAGGGATTGATGGTATATAAGTGATGACAGTTATCTCCATTGGTATAAGACATTTGAGGTGAAACTAGAAGCAAATCTATGAGCGCTTATGTCCAAAGTGAACAATATCATACGAATGTGGAGATATATGGAAGGTCTATTGTCCTTAACAATTGGTATTAGAGTCATGATCTAAAATTAGTTGTGTGTGAGAGAAACTCTCAAATTTCTAACAATGAGAATTAATGAGTTTCGTTTGTGCTCTATATCAGTGGTATGCTTCCCTACCTTGATAAGAGTAAAAATAAACCCTTGTTGTCAATTGGCGTGATCCGTTATGGTGCTCTATTTGGTTGTTGCCTTAGGATGAAGAGTAAACTCTCGTCGAGAGTTGAGAGTGGACAAATTTATTTGAGAAGAGACTCAAATGTGGCACTTTGTTCGTTGAGAAGATTGTTTGGTGCAAACAAAGTCCTACATTGACCAGAGAAATGAGATCTATGATATATAAGTGAAGACTATTACTTCATTAGTGTGAGACCTTTATTTAAAAACAAAAGCAAATATATGAGGGTTATGCTCAAAGTAATATCATACTAATGTGGAGATCTGTGATCCTAAAGATCCATAGGGTTAATTGTAGATCCAACAACAATAAAAATGTTCAAGTTGTTTCTTCTTATATTTTTATTTCAAATTTTAACTTTTTATATCTAGCAAAAAGATATACAATAATATTATTGTATTTAGTATTTGACTCAATCCTTTTTCGTAAAAGATTGGGTCATATTTAGTTTAGTTTAATTGAAAGTCAATTAAAAGAATAAAGAGTAATCATTGGATTACAAAGCATCCATTGCTTGAAAGTCAAATTTGATTGCCTTCCACAGTTCACAAGCAACAGTTAGTTTAGGACACCATTTACTAACCTCATGGATAATTTTATTACCCTTACCACTAAGATCACATTCCTCATTGCGAACTTGTATATATGCTTCTAGAGCCTACTCGATCAGCTATGACACCAAGTGCATTACCTTAATTGTGCCCTAAAGTTTCTCCATTGAATTGTAGTACAAAATCATCTAAAAAATCTCTTTTGTCGTCAATCATATATGGACTTTGATTTGATGAGTTTAAAATTAGGGTAATTGTAACGAGTAGTCTAGACCATAGAAGTCTATCAGCGATAGAAGTCTATCACTGATAGACTTTGCTATATTTACAATTTTTTTAAAATGTTGCTATATATACTAATACTTTGAATCTGATTGTTATATTTGCCACTGCCCCTTAAAATTACATAAATCCTTCCCGTCATAGAACAATGGAATTTGATTTTAAAAGAAATTGGCAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGAACAACAGACTCTACACCATAACAGGACAGGTAGGTTGCTCCATTATTTTATTCTTGGCTCAAACTTTTTAA ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCTTGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGTTCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGAACAACAGACTCTACACCATAACAGGACAGGTAGGTTGCTCCATTATTTTATTCTTGGCTCAAACTTTTTAA ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCTTGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGTTCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGAACAACAGACTCTACACCATAACAGGACAGGTAGGTTGCTCCATTATTTTATTCTTGGCTCAAACTTTTTAA MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCLRVIVVVAEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQVGCSIILFLAQTF Homology
BLAST of HG10004249 vs. NCBI nr
Match: XP_038885576.1 (psbP domain-containing protein 3, chloroplastic [Benincasa hispida]) HSP 1 Score: 362.5 bits (929), Expect = 2.6e-96 Identity = 183/229 (79.91%), Postives = 190/229 (82.97%), Query Frame = 0
BLAST of HG10004249 vs. NCBI nr
Match: XP_022946502.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita moschata] >KAG6599083.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 355.5 bits (911), Expect = 3.1e-94 Identity = 181/230 (78.70%), Postives = 188/230 (81.74%), Query Frame = 0
BLAST of HG10004249 vs. NCBI nr
Match: KAG7030019.1 (PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 355.5 bits (911), Expect = 3.1e-94 Identity = 181/230 (78.70%), Postives = 188/230 (81.74%), Query Frame = 0
BLAST of HG10004249 vs. NCBI nr
Match: XP_022999754.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita maxima]) HSP 1 Score: 354.0 bits (907), Expect = 9.1e-94 Identity = 179/230 (77.83%), Postives = 188/230 (81.74%), Query Frame = 0
BLAST of HG10004249 vs. NCBI nr
Match: XP_023546046.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 353.2 bits (905), Expect = 1.6e-93 Identity = 180/230 (78.26%), Postives = 187/230 (81.30%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy Swiss-Prot
Match: Q9S720 (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2) HSP 1 Score: 246.1 bits (627), Expect = 3.5e-64 Identity = 111/140 (79.29%), Postives = 126/140 (90.00%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy TrEMBL
Match: A0A6J1G3W9 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450544 PE=4 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94 Identity = 181/230 (78.70%), Postives = 188/230 (81.74%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy TrEMBL
Match: A0A6J1KI01 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494008 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 4.4e-94 Identity = 179/230 (77.83%), Postives = 188/230 (81.74%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy TrEMBL
Match: A0A0A0KDI5 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401450 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88 Identity = 177/232 (76.29%), Postives = 185/232 (79.74%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy TrEMBL
Match: A0A6J1DRN2 (psbP domain-containing protein 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022894 PE=4 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 2.3e-87 Identity = 176/234 (75.21%), Postives = 183/234 (78.21%), Query Frame = 0
BLAST of HG10004249 vs. ExPASy TrEMBL
Match: A0A6J1DNN6 (psbP domain-containing protein 3, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022894 PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 3.1e-87 Identity = 176/233 (75.54%), Postives = 182/233 (78.11%), Query Frame = 0
BLAST of HG10004249 vs. TAIR 10
Match: AT1G76450.1 (Photosystem II reaction center PsbP family protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.5e-65 Identity = 111/140 (79.29%), Postives = 126/140 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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