Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGATGCAAACAAAACGAAGATTCGTAGCTTCTCATTTTTCAAACTCCAAGATTCTTTCCAGCAAAGTTTCAACCATTTTGAAAACATCAACCACTATCCAAAAAAAGAAATCAAATAGTAAAAATTCTAAACTAACCCAATTCAAAACTCCACCACCAAAGACTGTATTGTTGCCCACAAAAGCTGCTCAAGTAGAGATGCTAAGAGCTAAATTTGGTGATACCATTTTGAAAACTCAACAAACACTTTTTCACAATTCTAAAATTCCTCAAGACGTTTTTGTTGTTGCTCCAAATATATGCTCTATACAACAACAAAGACAAGTTGCAAGACAAGCTCTTGACAACATGAAGTCCATCTTTGATTTTAATGAGAATCTTGATGGCATGAGGGAATTTGTTACCAAATACGCTCGAGCATATCTGGTTATAACCTACTTTGTCTTTTATCATTAA
mRNA sequence
ATGAATATGATGCAAACAAAACGAAGATTCGTAGCTTCTCATTTTTCAAACTCCAAGATTCTTTCCAGCAAAGTTTCAACCATTTTGAAAACATCAACCACTATCCAAAAAAAGAAATCAAATAGTAAAAATTCTAAACTAACCCAATTCAAAACTCCACCACCAAAGACTGTATTGTTGCCCACAAAAGCTGCTCAAGTAGAGATGCTAAGAGCTAAATTTGGTGATACCATTTTGAAAACTCAACAAACACTTTTTCACAATTCTAAAATTCCTCAAGACGTTTTTGTTGTTGCTCCAAATATATGCTCTATACAACAACAAAGACAAGTTGCAAGACAAGCTCTTGACAACATGAAGTCCATCTTTGATTTTAATGAGAATCTTGATGGCATGAGGGAATTTGTTACCAAATACGCTCGAGCATATCTGGTTATAACCTACTTTGTCTTTTATCATTAA
Coding sequence (CDS)
ATGAATATGATGCAAACAAAACGAAGATTCGTAGCTTCTCATTTTTCAAACTCCAAGATTCTTTCCAGCAAAGTTTCAACCATTTTGAAAACATCAACCACTATCCAAAAAAAGAAATCAAATAGTAAAAATTCTAAACTAACCCAATTCAAAACTCCACCACCAAAGACTGTATTGTTGCCCACAAAAGCTGCTCAAGTAGAGATGCTAAGAGCTAAATTTGGTGATACCATTTTGAAAACTCAACAAACACTTTTTCACAATTCTAAAATTCCTCAAGACGTTTTTGTTGTTGCTCCAAATATATGCTCTATACAACAACAAAGACAAGTTGCAAGACAAGCTCTTGACAACATGAAGTCCATCTTTGATTTTAATGAGAATCTTGATGGCATGAGGGAATTTGTTACCAAATACGCTCGAGCATATCTGGTTATAACCTACTTTGTCTTTTATCATTAA
Protein sequence
MNMMQTKRRFVASHFSNSKILSSKVSTILKTSTTIQKKKSNSKNSKLTQFKTPPPKTVLLPTKAAQVEMLRAKFGDTILKTQQTLFHNSKIPQDVFVVAPNICSIQQQRQVARQALDNMKSIFDFNENLDGMREFVTKYARAYLVITYFVFYH
Homology
BLAST of HG10004227 vs. NCBI nr
Match:
TYK19957.1 (hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa])
HSP 1 Score: 112.5 bits (280), Expect = 3.3e-21
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTIL-KTSTTIQKKKSNSKNSKLTQFKTP------ 60
M MMQ KRR+V F K+LS+KV+T + + T I + K ++ N +L +F++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PPKT-----VLLPTKAAQVEMLRAKFGDTILKTQQTLFH-NSKIPQDVFVVAPNI 120
P KT VL P +AA+VEML+ KFG TILK QQ L + +S I + V V AP +
Sbjct: 61 SPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEAPKV 120
Query: 121 CSIQQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSIQ+QR+ +R++LD +K +FDFNENLD MR+F
Sbjct: 121 CSIQEQRRASRESLDKIKPVFDFNENLDSMRDF 153
BLAST of HG10004227 vs. NCBI nr
Match:
KAA0064635.1 (hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa])
HSP 1 Score: 112.5 bits (280), Expect = 3.3e-21
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTIL-KTSTTIQKKKSNSKNSKLTQFKTP------ 60
M MMQ KRR+V F K+LS+KV+T + + T I + K ++ N +L +F++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PPKT-----VLLPTKAAQVEMLRAKFGDTILKTQQTLFH-NSKIPQDVFVVAPNI 120
P KT VL P +AA+VEML+ KFG TILK QQ L + +S I + V V AP +
Sbjct: 61 STTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEAPKV 120
Query: 121 CSIQQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSIQ+QR+ +R++LD +K +FDFNENLD MR+F
Sbjct: 121 CSIQEQRRASRESLDKIKPVFDFNENLDSMRDF 153
BLAST of HG10004227 vs. NCBI nr
Match:
KGN61401.2 (hypothetical protein Csa_006690, partial [Cucumis sativus])
HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 70/155 (45.16%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTILKTSTTIQKKKSNSKNSKLTQFKTPPPK---- 60
M MMQTKRR+V H K+LS+KV+T +K Q+K+SNS + +L FK P PK
Sbjct: 6 MKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNS-DRELANFKCPSPKKNNI 65
Query: 61 -----------TVLLPTKAAQVEMLRAKFGDTILKTQQTLFH----NSKIPQDVFVVAPN 120
VL P +AA+VE+L+AKFG TILK QQ L + ++K V P
Sbjct: 66 ELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPK 125
Query: 121 ICSI-QQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSI Q+Q++ +R+ALD + +F+FNENLD MREF
Sbjct: 126 ACSILQEQKRASREALDKINPVFNFNENLDSMREF 159
BLAST of HG10004227 vs. NCBI nr
Match:
KAE8647905.1 (hypothetical protein Csa_000421, partial [Cucumis sativus])
HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTILKTSTTIQKKKSNSKNSKLTQFKTPPPK---- 60
M MMQTKRR V H K+LS+KV+T +K Q+K+S S + +L FK P PK
Sbjct: 6 MKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPYNIYQRKESKS-DRELANFKCPSPKKNNI 65
Query: 61 -----------TVLLPTKAAQVEMLRAKFGDTILKTQQTLFH----NSKIPQDVFVVAPN 120
VL P +AA+VE+L+AKFG TILK QQ L + ++K V P
Sbjct: 66 ELLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPK 125
Query: 121 ICSI-QQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSI Q+Q++ +R+ALD + +FDFNENLD MREF
Sbjct: 126 TCSILQEQKRASREALDKINPVFDFNENLDSMREF 159
BLAST of HG10004227 vs. NCBI nr
Match:
KAG6589050.1 (hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 67/177 (37.85%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTILKTSTTIQKKKSNSKNSKLTQFKTPPPKT--- 60
M MMQTKRR+ SN ++SS V+T L+ S + SN +SK + FKTPP +T
Sbjct: 1 MRMMQTKRRYHTDDSSNRLVMSSNVTTFLRPSIADRTNISNG-DSKPSLFKTPPIRTTAQ 60
Query: 61 VLLPTKAAQVEMLRAKFGDTILKTQQTLFHNSKIPQDVFV---------VAPNIC----- 120
V PTK A+VEML+ KF +TI K QQ L KI + V V APN+
Sbjct: 61 VSSPTKTARVEMLKNKFSNTISKAQQALQSKHKIARKVAVPKKLPEQKRAAPNVVVPNVW 120
Query: 121 -------------------------SIQQQRQVARQALDNMKSIFDFNENLDGMREF 136
S+++QR+ +R+ALD +K +FNENLD M+EF
Sbjct: 121 STKQKRAARKAFSTIEQKQASPKEYSVREQRRASREALDAVKPTCNFNENLDVMKEF 176
BLAST of HG10004227 vs. ExPASy TrEMBL
Match:
A0A5A7VFH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003590 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTIL-KTSTTIQKKKSNSKNSKLTQFKTP------ 60
M MMQ KRR+V F K+LS+KV+T + + T I + K ++ N +L +F++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PPKT-----VLLPTKAAQVEMLRAKFGDTILKTQQTLFH-NSKIPQDVFVVAPNI 120
P KT VL P +AA+VEML+ KFG TILK QQ L + +S I + V V AP +
Sbjct: 61 STTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEAPKV 120
Query: 121 CSIQQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSIQ+QR+ +R++LD +K +FDFNENLD MR+F
Sbjct: 121 CSIQEQRRASRESLDKIKPVFDFNENLDSMRDF 153
BLAST of HG10004227 vs. ExPASy TrEMBL
Match:
A0A5D3D8Q3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00700 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTIL-KTSTTIQKKKSNSKNSKLTQFKTP------ 60
M MMQ KRR+V F K+LS+KV+T + + T I + K ++ N +L +F++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PPKT-----VLLPTKAAQVEMLRAKFGDTILKTQQTLFH-NSKIPQDVFVVAPNI 120
P KT VL P +AA+VEML+ KFG TILK QQ L + +S I + V V AP +
Sbjct: 61 SPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEAPKV 120
Query: 121 CSIQQQRQVARQALDNMKSIFDFNENLDGMREF 136
CSIQ+QR+ +R++LD +K +FDFNENLD MR+F
Sbjct: 121 CSIQEQRRASRESLDKIKPVFDFNENLDSMRDF 153
BLAST of HG10004227 vs. ExPASy TrEMBL
Match:
A0A0A0KMZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 0
Query: 1 MNMMQTKRRFVASHFSNSKILSSKVSTILKTSTTIQKKKSNSKNSKLTQFKTPPPK---- 60
M MMQTKRR++ H K+LS+KV+ +K Q+K+SN + +LT FK PK
Sbjct: 1 MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNG-DHELTNFKCLSPKKNNI 60
Query: 61 -----------TVLLPTKAAQVEMLRAKFGDTILKTQQTL----FHNSKIPQDVFVVAPN 120
VL P +AA+VE+L+AKFG TI K QQ L ++K V P
Sbjct: 61 ELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPK 120
Query: 121 ICSI-QQQRQVARQALDNM-KSIFDFNENLDGMREFVTKYARAYLVI 147
CSI Q+Q++ +R+ALD M +FDFNENLD M+EF ++RA+ V+
Sbjct: 121 TCSILQEQKRASREALDKMINPVFDFNENLDSMKEFERYWSRAHEVM 166
BLAST of HG10004227 vs. ExPASy TrEMBL
Match:
A0A0A0KRB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 31 TSTTIQKKKSNSKNSKLTQFKTPPPK-------------TVLLPTKAAQVEMLRAKFGDT 90
T I + K ++ + L FK P PK VL P +AA+VE+L+AKFG T
Sbjct: 2 TPYNIHQIKESNSDHDLANFKCPSPKNNIAVLPIKPNTIVVLSPRRAARVEVLKAKFGST 61
Query: 91 ILKTQQTLFHNSKIPQD----VFVVAPNICSIQQQRQVARQALDNMKSIFDFNENLDGMR 136
ILK QQ L HNS + + PNICSIQ+QRQ R+ALD + FDFNENLD MR
Sbjct: 62 ILKAQQKL-HNSNNDSNKHEYIVGATPNICSIQEQRQALREALDKINPAFDFNENLDSMR 121
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK19957.1 | 3.3e-21 | 46.41 | hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa] | [more] |
KAA0064635.1 | 3.3e-21 | 46.41 | hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa] | [more] |
KGN61401.2 | 2.4e-19 | 45.16 | hypothetical protein Csa_006690, partial [Cucumis sativus] | [more] |
KAE8647905.1 | 9.0e-19 | 45.16 | hypothetical protein Csa_000421, partial [Cucumis sativus] | [more] |
KAG6589050.1 | 1.7e-12 | 37.85 | hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VFH7 | 1.6e-21 | 46.41 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3D8Q3 | 1.6e-21 | 46.41 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KMZ1 | 1.8e-17 | 41.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1 | [more] |
A0A0A0KRB6 | 1.1e-14 | 46.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |