Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATGCAGACAAAACGACGATACATTGCTTCTCGTTCAAACCCCAAGATTCTTTCAAGCAAAGTTACAACCATTGTGAAACCATTTACCACTGTCAAACAAAAAAAATCAAATAGCAATAATTCTGAAGTAACCAAATTCAAAACTCCACCACAAAAAACTATTGTATTGTCCCCCACGAAAGCGGCTCGAGTAGAGATGCTAAGAGCCAGATTTGGTGATACCATTTCGAAAGCTCAACAAACACTTTTTCCAAATTCTAAAATTGCTGATCATGTTGTTGTTGCTGCTCCTCCAAAGATATGTTCCATACAACAACAAAGACAAGCTGCAAAAGAAGCTCTGGACAACATGAAGCCCATATTTGATTTTAACGAAAATCTAGATGCCATGAGAGAATTTGATAAACTCATTAAATTGTGA
mRNA sequence
ATGAAGATGATGCAGACAAAACGACGATACATTGCTTCTCGTTCAAACCCCAAGATTCTTTCAAGCAAAGTTACAACCATTGTGAAACCATTTACCACTGTCAAACAAAAAAAATCAAATAGCAATAATTCTGAAGTAACCAAATTCAAAACTCCACCACAAAAAACTATTGTATTGTCCCCCACGAAAGCGGCTCGAGTAGAGATGCTAAGAGCCAGATTTGGTGATACCATTTCGAAAGCTCAACAAACACTTTTTCCAAATTCTAAAATTGCTGATCATGTTGTTGTTGCTGCTCCTCCAAAGATATGTTCCATACAACAACAAAGACAAGCTGCAAAAGAAGCTCTGGACAACATGAAGCCCATATTTGATTTTAACGAAAATCTAGATGCCATGAGAGAATTTGATAAACTCATTAAATTGTGA
Coding sequence (CDS)
ATGAAGATGATGCAGACAAAACGACGATACATTGCTTCTCGTTCAAACCCCAAGATTCTTTCAAGCAAAGTTACAACCATTGTGAAACCATTTACCACTGTCAAACAAAAAAAATCAAATAGCAATAATTCTGAAGTAACCAAATTCAAAACTCCACCACAAAAAACTATTGTATTGTCCCCCACGAAAGCGGCTCGAGTAGAGATGCTAAGAGCCAGATTTGGTGATACCATTTCGAAAGCTCAACAAACACTTTTTCCAAATTCTAAAATTGCTGATCATGTTGTTGTTGCTGCTCCTCCAAAGATATGTTCCATACAACAACAAAGACAAGCTGCAAAAGAAGCTCTGGACAACATGAAGCCCATATTTGATTTTAACGAAAATCTAGATGCCATGAGAGAATTTGATAAACTCATTAAATTGTGA
Protein sequence
MKMMQTKRRYIASRSNPKILSSKVTTIVKPFTTVKQKKSNSNNSEVTKFKTPPQKTIVLSPTKAARVEMLRARFGDTISKAQQTLFPNSKIADHVVVAAPPKICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIKL
Homology
BLAST of HG10004226 vs. NCBI nr
Match:
TYK19957.1 (hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 82/159 (51.57%), Postives = 114/159 (71.70%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIV-KPFTTVKQKKSNSNNSEVTKFKTP------ 60
M+MMQ KRRY+ R K+LS+KVTT V + +T + Q K +++N E+ KF++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PQKT----IVLSPTKAARVEMLRARFGDTISKAQQTLF-PNSKIADHVVVAAPPK 120
P+KT IVLSP +AARVEML+ +FG TI KAQQ L +S I +VVV A PK
Sbjct: 61 SPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEA-PK 120
Query: 121 ICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
+CSIQ+QR+A++E+LD +KP+FDFNENLD+MR+F++L+K
Sbjct: 121 VCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELLK 158
BLAST of HG10004226 vs. NCBI nr
Match:
KAA0064635.1 (hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 82/159 (51.57%), Postives = 114/159 (71.70%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIV-KPFTTVKQKKSNSNNSEVTKFKTP------ 60
M+MMQ KRRY+ R K+LS+KVTT V + +T + Q K +++N E+ KF++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PQKT----IVLSPTKAARVEMLRARFGDTISKAQQTLF-PNSKIADHVVVAAPPK 120
P+KT IVLSP +AARVEML+ +FG TI KAQQ L +S I +VVV A PK
Sbjct: 61 STTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEA-PK 120
Query: 121 ICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
+CSIQ+QR+A++E+LD +KP+FDFNENLD+MR+F++L+K
Sbjct: 121 VCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELLK 158
BLAST of HG10004226 vs. NCBI nr
Match:
KGN61401.2 (hypothetical protein Csa_006690, partial [Cucumis sativus])
HSP 1 Score: 129.0 bits (323), Expect = 3.2e-26
Identity = 79/160 (49.38%), Postives = 110/160 (68.75%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIVKPFTTVKQKKSNSNNSEVTKFKTPPQK---- 60
MKMMQTKRRY+ PK+LS+KVTT +KP+ ++K+SNS+ E+ FK P K
Sbjct: 6 MKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNSDR-ELANFKCPSPKKNNI 65
Query: 61 ----------TIVLSPTKAARVEMLRARFGDTISKAQQTL---FPNSKIADHVVVAAPPK 120
+VLSP +AARVE+L+A+FG TI KAQQ L +S ++VVV A PK
Sbjct: 66 ELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPK 125
Query: 121 ICSI-QQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
CSI Q+Q++A++EALD + P+F+FNENLD+MREF+K+++
Sbjct: 126 ACSILQEQKRASREALDKINPVFNFNENLDSMREFEKILE 164
BLAST of HG10004226 vs. NCBI nr
Match:
KAE8647905.1 (hypothetical protein Csa_000421, partial [Cucumis sativus])
HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 77/160 (48.12%), Postives = 109/160 (68.12%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIVKPFTTVKQKKSNSNNSEVTKFKTPPQK---- 60
MKMMQTKRR++ PK+LS+KVTT +KP+ + Q+K + ++ E+ FK P K
Sbjct: 6 MKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPY-NIYQRKESKSDRELANFKCPSPKKNNI 65
Query: 61 ----------TIVLSPTKAARVEMLRARFGDTISKAQQTL---FPNSKIADHVVVAAPPK 120
+VLSP +AARVE+L+A+FG TI KAQQ L +S ++VVV A PK
Sbjct: 66 ELLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPK 125
Query: 121 ICSI-QQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
CSI Q+Q++A++EALD + P+FDFNENLD+MREF+K+++
Sbjct: 126 TCSILQEQKRASREALDKINPVFDFNENLDSMREFEKILE 164
BLAST of HG10004226 vs. NCBI nr
Match:
KAG6589050.1 (hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 101.7 bits (252), Expect = 5.4e-18
Identity = 76/181 (41.99%), Postives = 100/181 (55.25%), Query Frame = 0
Query: 1 MKMMQTKRRY-IASRSNPKILSSKVTTIVKPFTTVKQKKSNSNNSEVTKFKTPPQKTI-- 60
M+MMQTKRRY SN ++SS VTT ++P + SN +S+ + FKTPP +T
Sbjct: 1 MRMMQTKRRYHTDDSSNRLVMSSNVTTFLRPSIADRTNISN-GDSKPSLFKTPPIRTTAQ 60
Query: 61 VLSPTKAARVEMLRARFGDTISKAQQTLFPNSKIADHVVV---------AAP-------- 120
V SPTK ARVEML+ +F +TISKAQQ L KIA V V AAP
Sbjct: 61 VSSPTKTARVEMLKNKFSNTISKAQQALQSKHKIARKVAVPKKLPEQKRAAPNVVVPNVW 120
Query: 121 ---------------------PKICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKL 141
PK S+++QR+A++EALD +KP +FNENLD M+EF+ L
Sbjct: 121 STKQKRAARKAFSTIEQKQASPKEYSVREQRRASREALDAVKPTCNFNENLDVMKEFENL 180
BLAST of HG10004226 vs. ExPASy TrEMBL
Match:
A0A5A7VFH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003590 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 82/159 (51.57%), Postives = 114/159 (71.70%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIV-KPFTTVKQKKSNSNNSEVTKFKTP------ 60
M+MMQ KRRY+ R K+LS+KVTT V + +T + Q K +++N E+ KF++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PQKT----IVLSPTKAARVEMLRARFGDTISKAQQTLF-PNSKIADHVVVAAPPK 120
P+KT IVLSP +AARVEML+ +FG TI KAQQ L +S I +VVV A PK
Sbjct: 61 STTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEA-PK 120
Query: 121 ICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
+CSIQ+QR+A++E+LD +KP+FDFNENLD+MR+F++L+K
Sbjct: 121 VCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELLK 158
BLAST of HG10004226 vs. ExPASy TrEMBL
Match:
A0A5D3D8Q3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00700 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 82/159 (51.57%), Postives = 114/159 (71.70%), Query Frame = 0
Query: 1 MKMMQTKRRYIASR-SNPKILSSKVTTIV-KPFTTVKQKKSNSNNSEVTKFKTP------ 60
M+MMQ KRRY+ R K+LS+KVTT V + +T + Q K +++N E+ KF++P
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60
Query: 61 -----PQKT----IVLSPTKAARVEMLRARFGDTISKAQQTLF-PNSKIADHVVVAAPPK 120
P+KT IVLSP +AARVEML+ +FG TI KAQQ L +S I +VVV A PK
Sbjct: 61 SPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVVEA-PK 120
Query: 121 ICSIQQQRQAAKEALDNMKPIFDFNENLDAMREFDKLIK 142
+CSIQ+QR+A++E+LD +KP+FDFNENLD+MR+F++L+K
Sbjct: 121 VCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELLK 158
BLAST of HG10004226 vs. ExPASy TrEMBL
Match:
A0A0A0KMZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 75/158 (47.47%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MKMMQTKRRYIASRS-NPKILSSKVTTIVKPFTTVKQKKSNSNNSEVTKFK--------- 60
M+MMQTKRRYI PK+LS+KVT +KP+ + Q+K ++ + E+T FK
Sbjct: 1 MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPY-NIHQRKESNGDHELTNFKCLSPKKNNI 60
Query: 61 -----TPPQKTIVLSPTKAARVEMLRARFGDTISKAQQTLFP---NSKIADHVVVAAPPK 120
P +VLSP +AARVE+L+A+FG TI KAQQ L +S ++VV+ A PK
Sbjct: 61 ELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPK 120
Query: 121 ICSI-QQQRQAAKEALDNM-KPIFDFNENLDAMREFDK 139
CSI Q+Q++A++EALD M P+FDFNENLD+M+EF++
Sbjct: 121 TCSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157
BLAST of HG10004226 vs. ExPASy TrEMBL
Match:
A0A0A0KRB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 0
Query: 30 PFTTVKQKKSNSNNSEVTKFKTP------------PQKTIVLSPTKAARVEMLRARFGDT 89
P+ + K+SNS++ ++ FK P P +VLSP +AARVE+L+A+FG T
Sbjct: 3 PYNIHQIKESNSDH-DLANFKCPSPKNNIAVLPIKPNTIVVLSPRRAARVEVLKAKFGST 62
Query: 90 ISKAQQTLF--PNSKIADHVVVAAPPKICSIQQQRQAAKEALDNMKPIFDFNENLDAMRE 142
I KAQQ L N +V A P ICSIQ+QRQA +EALD + P FDFNENLD+MRE
Sbjct: 63 ILKAQQKLHNSNNDSNKHEYIVGATPNICSIQEQRQALREALDKINPAFDFNENLDSMRE 122
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK19957.1 | 2.2e-27 | 51.57 | hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa] | [more] |
KAA0064635.1 | 2.2e-27 | 51.57 | hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa] | [more] |
KGN61401.2 | 3.2e-26 | 49.38 | hypothetical protein Csa_006690, partial [Cucumis sativus] | [more] |
KAE8647905.1 | 1.6e-25 | 48.13 | hypothetical protein Csa_000421, partial [Cucumis sativus] | [more] |
KAG6589050.1 | 5.4e-18 | 41.99 | hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VFH7 | 1.1e-27 | 51.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3D8Q3 | 1.1e-27 | 51.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KMZ1 | 2.7e-23 | 47.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1 | [more] |
A0A0A0KRB6 | 1.5e-18 | 48.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |