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HG10004222 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTATTATAATTATTAAATAATCATTTTTTTTTACTAAATATACTGACATAAATTTATATTATCAACTTCGAAACAAAAATTGACAGATTTGAAGAAGAAAGTCTAACCTCCTTGTCTTCCAAATCTTATTAATTCTCTCTCCCCACATGTCGGCTTGTGGGTCTCGTATTGTTCCCTCCTTCCACTGCCATTGCAGCTGGGATACTCCAAATTCCTCCCTTCACGTAATTTCCACATCCTCCAACTTCAATTTATTCTTCATGCCCTTCTCTACCATTAGTTTTTCAATCAACCCCTCACATTTTCTTCAAAATTAATTAATTTCTCTCAAGTCACATTGTGACGGTCTCTCTAAATCATTTTATATCTCGTCTAAAATTACTCGTCATATAGATGGTTGAACAAGAAAATTATTTTGTGCATCTCGTACTCTGAATCCATCTTTTTGTAGTCTATCAGTTTGCTACCCAATAAACTTTGTATTTTTGTTTTAATATTTTTGAGTTTTTGGTTAAAATAAATTGGAAGAAAAAAAAGATGCAGTCTAAAATATGTAATTTAGTACTTTCCCACTCTTCTTTATTCTCGATAATGGTTTCTCTCTAGCTTTGTTATTTGTTTCACATGAGTTTCTCTCTAACTCTCTCCTGTACTGATTTTGATATTGGTATGCGATATCATAAGGGTGCTAAGAATGTGTCAATATAATTAAAATATTCCGGTATATCTACTAATCATATAGGATCTCTGGTATCTTTTTCTAGAAAAAAAATGTACTAAAAAATATTACTTGTTTTGAATTACTTTTCACTACTTGTAAAAATTGTAATGTTCTTTTATTTTATTTGTGGGTGTAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAA ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAA ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAA MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM Homology
BLAST of HG10004222 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida]) HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40 Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of HG10004222 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa]) HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of HG10004222 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus]) HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of HG10004222 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154.8 bits (390), Expect = 3.6e-34 Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of HG10004222 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 153.7 bits (387), Expect = 8.1e-34 Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 4.3e-30 Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25 Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 2.4e-25 Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 9.3e-25 Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23 Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 8.4e-37 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 8.4e-37 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34 Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of HG10004222 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34 Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of HG10004222 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 131.7 bits (330), Expect = 3.1e-31 Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0
BLAST of HG10004222 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 ) HSP 1 Score: 117.1 bits (292), Expect = 7.8e-27 Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 0
BLAST of HG10004222 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26 Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0
BLAST of HG10004222 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 114.0 bits (284), Expect = 6.6e-26 Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0
BLAST of HG10004222 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 ) HSP 1 Score: 110.2 bits (274), Expect = 9.5e-25 Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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