HG10004218 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004218
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	single-stranded DNA-binding protein WHY1, chloroplastic-like
Location	Chr08: 14863575 .. 14867535 (-)
RNA-Seq Expression	HG10004218
Synteny	HG10004218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGATTGTGAGTGAGAAAAGAGAGTAAGGGAACGAGATGGACTTTTCTGCGTGTGCGAGCTTATTTTGATAATTTTATTCGATATCAGCAAATGGTCATTTAGTATTTTTTCAAAAATTTGGATCATTCACATTTTTCAATTTTTGGGTCATCCGTTCAAGGAAATAAAAAGTTTGTAGGGTGCCACGGGCTTGGAGTTCGATTCTAATCTAACACCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAAGCCCAAACGATGCTACGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGTCATTCAACCCCGAACTCTCGCCGGAAACTGTTTCGAACCGCCAACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCCAAATGCCAATACTCCTGGAACACGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCGGAGGTACTTCCTTATCCGTTTCATTTTTTTTTTTTTTGAAGAACTTCGTGTATCCTGTCGGTCACAGTTGGTGAGAGGAGGGTTTACGCTATTTGGAAATTTTGGTTTATGTTGGAGGAAAATGAAGTTATATCTCCGTTTGTGGCATTGAAAACATGCACTGACTTTGTTTGACCGTGTATGGACTGAATTATTATGACCCTGTTCTCTTTTTGTTTATCACCTGTTCCTCAATTTTGCCGGAGACCATAAGCTGGGAGTATTCAGACATGATTCAATTTCAAAGGGTTTCTCCTAATACAAGGGTTTTGTTTTTTATGTTCTTTGTTTATTTTGTGTTAGTTGTTTTTTATTTCTCGGGTTCTGAAGTATTATGGGTTGGCTTGTTAGTTGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATGTATGTTTGACTTGAATTCTGAGCTTTGTCATAATTCATGATATGCTGCTTTTCTTTGTTGTTAGTTTTTTTAAATTATTCATCGTTTAAAATTTGTCAGTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGGCAATATGATTGGAGCAGAAAACAGGTGTTCTATAACGAGCTGATATTTAACTCCTGAAGTTATGGAAGTTTCTGAATTAATGAACTAAACTGAAATTCTAGGTTAATGCTGACTACTATTCCACAGGTTCTATATTTGGCATCTTAGAGGTGTGGAAAAGTAGTATCATTTCCTTGATGCAGTAGATGGTATTAAAAATACCAAGGCATGTTTGGGGAGCTGTGTACGACAACCATTTTTCTGTTTTCTATAATCAAACTATTTGCAAGAACAATAATTGGATGATGTCTTGTAAATGTTAAGATCATTATGCATTTGAAATCACTCTTTTTTTACTTTTTTGAAATCAGAACAACTTGAGTTGTTCTCAAGAAAATGTTACTATGAGAATAAACTAAATCAGACACGGTGAAGAACTTTTGGTGAAACAATTCTTTTGTTAGTTCTTTTTCTTGTATGATTATTTGATACCTTACCAAATTAGATTACACTTTGTTTTGTATATAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGCGAGTCTTGTGAATTCTTTCATGACCCCTATAAGGGAAAAAGGTACTATTTTTTACAAGTACAATCGAAATTTATACCATTAGTTGTGCCATGTTCATGTTTATGTATTGTGCATTCTTTGGTTAGCACAAACATTTATACTATCGTCTGGCCAAGCATGCTTTCTCAGATCTAAGAATTGCATGATTGTGTTACATTGAACATTGAAAACAATGATGTCTTGATCTTTTTAGTAGCTAAATACCACATTTCTTGGGTCTACATGCTGACAAATAAAATGATTTTTACGTCATAAGTTGTTTGTAAACAAAGCTTTACAGGTTCGGAAACATAGTATTTTATGTTAACAAGAGACGACAAAATATGTCTTGATCTTTTTAGTAGCCAAATACCACCATATTTCTTGGGTCTACATGCTGCCAAATAAAATGATTTCTACGTCATAAGTTGTATGTAAACAAAGCTTTACAGGTTCAGAAACATAGTATTTTATGTTAACAAGAGACGACAAAATATTTGTTCTGCAGTGATGAAGGGAAGGTCAGAAAGATTCTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTTAGTAAGTCCTGTATAGAAACCTCTATGATCCATTTGAGCTTGAATGTAAATGCTGAATTCTGCTTCATGGGTGTTCAGTTGAAGAGAGGGTATGTGTTACCTCCAATGGAATTTAATCAGTTGGAAGCATTTATGTCTCATTTACTTTTGTCATGTTATTTTCCAAACCCCTTGATATGATTACCATTTTTTTTGCCCCTTAAACTTCCGTTATATCTTCAATTATGATGATAGTTTCTGATAGGATTAGTACACTTCCTATCAAATACACTTGTTGTAAAAGAGGCGAGAGAATTAGTATATGATAAGTTAGTATGCACGACTCATGAGGCATCTTTAGTACAGATGGAGCTGTGTGTGCTGGGTCGTTAGAATTAGTTTAACATTGATTTGCTAAAGTTATATATAGTTCAATGGATATCTGGATTTCAATTGTCCTGCTTTAATCTGATTCTTTATTAGACCTCTGGAATAGTCTTAAGAACCTGATTTACTTTTTGGTTTGCTTATTTCAAAGTTTGATAAATAATCTACATATCTATCGTAATGGAACTTGATTATTATTTTTTTAAAGTTCCTTTTCTGGATAGCATTGATCCTGTGAACTGCAATGATGCTAGAGAGTTTTTTTTTTCCCTTACCCCACTTACCTTTTCTGTTCTATTTTGATGCACAAGGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTTGAGGCTTTCAAGGTATAGTTCTTTCCAGTTTACATGCCGATTCTTTCTTCTCATGCTTGTTTAATTCAATTAAGACACGTGATTATGATCAAAGAAGTAAAAAACTGCGTGTCATTTGGGTCACTCTGAAACTACAAAAAACGAGAGAGAATTCTAGACTGACCAAAACCGAGTTAGTCCTGTTGGCTTCAAAAACGCATTTTGTCTGGTTCGGTTTCGCTAAGTTTAGATCTGAAGATCAGTCGGTTGATTCGGTTCAGTCACTTTTTGTTTGTCTAGTCAGCTCTGGTTAGGTAGTTGGTTTGATATTCCAAAGTTGTTTTCACCTTAGTTTTCTATATTCTTTTAAGCTGTAGGGTTTGGCATCAGTATTGGCCAAAACCTGAGCCGAACTTATGTACGGGAACTTCTTTGTTTTTTTTTTTTTCCTTTTATATCCACGAGTGTCCGAGTCAGTTTGTGCACACCTCAACTAATTTCACGACACAACCCACTTGATCTTACAACATTTAGGTGTCAAAAAAAAACTCATAGAATATTAAACTTTAGGTAGGTAGTCACTATAAATTGAAATCATTCTTTCTAAGCCCTTTCTTATACCCATGATCTCCTTTTACCACTAGACCAACCTATGAAGGTTGATGTCAACCTCGTTTTTTCTCCAACTTGTGTGATTATAATTCGTAAATGGGATGTTTAAGGTAGCGTTTCTGATACGGGTGAACTCATTACTCTGTAGTTTATCTTGCCGCACCTTATGGGTTGGCATACGATTGCAAACACCATCACGAAGCCTGAAGATAGCAGCCGAGTAAATAATGCCAATCCCAGATATGGGGGTGACTTTGAATGGAACAGATAG

mRNA sequence

ATGAGAGTGATTGGTGCCACGGGCTTGGAGTTCGATTCTAATCTAACACCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAAGCCCAAACGATGCTACGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGTCATTCAACCCCGAACTCTCGCCGGAAACTGTTTCGAACCGCCAACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCCAAATGCCAATACTCCTGGAACACGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCGGAGTTGTTTTTTATTTCTCGGGTTCTGAAGTATTATGGGTTGGCTTGTTAGTTGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGGCAATATGATTGGAGCAGAAAACAGGTTAATGCTGACTACTATTCCACAGGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTTATGGGTTGGCATACGATTGCAAACACCATCACGAAGCCTGAAGATAGCAGCCGAGTAAATAATGCCAATCCCAGATATGGGGGTGACTTTGAATGGAACAGATAG

Coding sequence (CDS)

ATGAGAGTGATTGGTGCCACGGGCTTGGAGTTCGATTCTAATCTAACACCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAAGCCCAAACGATGCTACGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGTCATTCAACCCCGAACTCTCGCCGGAAACTGTTTCGAACCGCCAACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCCAAATGCCAATACTCCTGGAACACGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCGGAGTTGTTTTTTATTTCTCGGGTTCTGAAGTATTATGGGTTGGCTTGTTAGTTGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGGCAATATGATTGGAGCAGAAAACAGGTTAATGCTGACTACTATTCCACAGGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTTATGGGTTGGCATACGATTGCAAACACCATCACGAAGCCTGAAGATAGCAGCCGAGTAAATAATGCCAATCCCAGATATGGGGGTGACTTTGAATGGAACAGATAG

Protein sequence

MRVIGATGLEFDSNLTPAGSLSNPHRDRIAAKTKAQTMLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVNADYYSTGVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDFEWNR

Homology

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BLAST of HG10004218 vs. NCBI nr
Match: XP_038884310.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 370.9 bits (951), Expect = 9.4e-99
Identity = 201/291 (69.07%), Postives = 210/291 (72.16%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNT--- 97
           MLRLQWLSSSLLPSFNPEL PE++SN +LCSLNSFRPLLTL    KPSPKCQYSWNT   
Sbjct: 1   MLRLQWLSSSLLPSFNPELLPESLSNGRLCSLNSFRPLLTL----KPSPKCQYSWNTQQQ 60

Query: 98  QQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAA 157
           QQQS FEPGSQTDSFSSQTRA                 VAAAALPPRFFVGHSIYKGKAA
Sbjct: 61  QQQSPFEPGSQTDSFSSQTRA----------------RVAAAALPPRFFVGHSIYKGKAA 120

Query: 158 LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV-------------- 217
           LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV              
Sbjct: 121 LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVAL 180

Query: 218 ----------------------------------NADYYSTGVQNKLINVDESIYIPITK 277
                                             +  +++  VQNKLINVDESIYIPITK
Sbjct: 181 GPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITK 240

[Close]

BLAST of HG10004218 vs. NCBI nr
Match: XP_008456468.1 (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis melo] >KAA0036450.1 single-stranded DNA-binding protein WHY1 [Cucumis melo var. makuwa] >TYK00036.1 single-stranded DNA-binding protein WHY1 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 2.1e-98
Identity = 198/290 (68.28%), Postives = 209/290 (72.07%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNT--Q 97
           MLRLQWLSSSLLP+FNPELSPET+SN +LCSLN  RPLLTLTTTRKPSPKCQYSWNT   
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 98  QQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAAL 157
           QQS+FEP SQTDSFS Q+RAG                 AAAALPPRFFVGHSIYKGKAAL
Sbjct: 61  QQSSFEPASQTDSFSPQSRAG-----------------AAAALPPRFFVGHSIYKGKAAL 120

Query: 158 TVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV--------------- 217
           TVEPRPPEFTPLDSGAFKISREG V+LQFAPAAGVRQYDWSRKQV               
Sbjct: 121 TVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALG 180

Query: 218 ---------------------------------NADYYSTGVQNKLINVDESIYIPITKG 277
                                            +  +++  VQNKLINVDESIYIPITK 
Sbjct: 181 PREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKA 240

[Close]

BLAST of HG10004218 vs. NCBI nr
Match: XP_038884311.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 369.0 bits (946), Expect = 3.6e-98
Identity = 200/291 (68.73%), Postives = 209/291 (71.82%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNT--- 97
           MLRLQWLSSSLLPSFNPEL PE++SN +LCSLNSFRPLLTL    KPSPKCQYSWNT   
Sbjct: 1   MLRLQWLSSSLLPSFNPELLPESLSNGRLCSLNSFRPLLTL----KPSPKCQYSWNTQQQ 60

Query: 98  QQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAA 157
           QQQS FEPGSQTDSFSSQTRA                  AAAALPPRFFVGHSIYKGKAA
Sbjct: 61  QQQSPFEPGSQTDSFSSQTRAR-----------------AAAALPPRFFVGHSIYKGKAA 120

Query: 158 LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV-------------- 217
           LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV              
Sbjct: 121 LTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVAL 180

Query: 218 ----------------------------------NADYYSTGVQNKLINVDESIYIPITK 277
                                             +  +++  VQNKLINVDESIYIPITK
Sbjct: 181 GPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITK 240

[Close]

BLAST of HG10004218 vs. NCBI nr
Match: XP_011657483.1 (single-stranded DNA-binding protein WHY1, chloroplastic [Cucumis sativus] >KGN47809.1 hypothetical protein Csa_003431 [Cucumis sativus] >QED11101.1 WHY1 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 2.6e-93
Identity = 191/290 (65.86%), Postives = 203/290 (70.00%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQ-- 97
           MLRLQ LSSS LP+FNPELSPET+SN +LC+LN  RPL TLTTTRKP+ KCQYSWNTQ  
Sbjct: 1   MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQH 60

Query: 98  QQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAAL 157
           QQSAFEP   TDS S Q+RAG                 AAAALPPRFFVGHSIYKGKAAL
Sbjct: 61  QQSAFEPAPHTDSLSPQSRAGAA--------------AAAAALPPRFFVGHSIYKGKAAL 120

Query: 158 TVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV--------------- 217
           TVEPRPPEFTPLDSGAFKISREG V+LQFAPAAGVRQYDWSRKQV               
Sbjct: 121 TVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALG 180

Query: 218 ---------------------------------NADYYSTGVQNKLINVDESIYIPITKG 277
                                            +  +++  VQNKLINVDESIYIPITK 
Sbjct: 181 PREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKA 240

[Close]

BLAST of HG10004218 vs. NCBI nr
Match: XP_023546045.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-92
Identity = 191/289 (66.09%), Postives = 204/289 (70.59%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQQ- 97
           MLRLQ LSSSLLP   PELSPET SNR+LC LNSFRPLLTL+TT K SPKCQYSWNTQQ 
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 98  QSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAALT 157
           Q+AFE GSQTDSFSSQTRAG                 AAAALPPRFFVGHSIYKGKAALT
Sbjct: 61  QAAFESGSQTDSFSSQTRAG-----------------AAAALPPRFFVGHSIYKGKAALT 120

Query: 158 VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV---------------- 217
           VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV                
Sbjct: 121 VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGP 180

Query: 218 --------------------------------NADYYSTGVQNKLINVDESIYIPITKGE 277
                                           +  +++  VQNKL NVDESIYIPITK E
Sbjct: 181 RESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAE 240

[Close]

BLAST of HG10004218 vs. ExPASy Swiss-Prot
Match: Q9M9S3 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.0e-51
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 135 AAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYD 194
           A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S++GF+LLQFAP+AGVRQYD
Sbjct: 74  AEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYD 133

Query: 195 WSRKQV------------------------------------------------NADYYS 254
           WS+KQV                                                +  +++
Sbjct: 134 WSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFN 193

Query: 255 TGVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNAN 278
             VQNKL+NVDESIYIPIT+ E+ VL+ AF F+LP+L+GWH  AN+I KPE++SRVNNA+
Sbjct: 194 LSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWHAFANSI-KPEETSRVNNAS 253

[Close]

BLAST of HG10004218 vs. ExPASy Swiss-Prot
Match: Q66GR6 (Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY3 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-50
Identity = 110/244 (45.08%), Postives = 140/244 (57.38%), Query Frame = 0


Query: 83  KPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRF 142
           KP+ + + +  ++Q   FE     DS SSQ                      A    PRF
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN---------------------AEVSSPRF 106

Query: 143 FVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV-- 202
           +VGHSIYKGKAALT+EPR PEF  L+SGAFK+++EGF+LLQFAPAAGVRQYDWSRKQV  
Sbjct: 107 YVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFS 166

Query: 203 -----------------------------------------------NADYYSTGVQNKL 262
                                                          +  +++  VQNKL
Sbjct: 167 LSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKL 226

Query: 263 INVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDF 278
           +NVDES+YIPITK E+ VL+ AF F+LPHL+GW   AN+I KPEDS+R+NNA+P+YGGD+
Sbjct: 227 LNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSI-KPEDSNRLNNASPKYGGDY 268

[Close]

BLAST of HG10004218 vs. ExPASy Swiss-Prot
Match: Q9LL85 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=4113 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.2e-49
Identity = 100/189 (52.91%), Postives = 120/189 (63.49%), Query Frame = 0


Query: 137 ALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWS 196
           A  P+ FVG+SIYKGKAALTVEPR PEF+PLDSGAFK+SREG V+LQFAPAAGVRQYDWS
Sbjct: 87  ASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWS 146

Query: 197 RKQV------------------------------------------------NADYYSTG 256
           RKQV                                                +  +++  
Sbjct: 147 RKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLS 206

Query: 257 VQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPR 278
           VQNKLIN+DE+IYIP+TK E+ VLV AF F++P+L+GWHT  N+  KPED+SR NNANPR
Sbjct: 207 VQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSF-KPEDASRSNNANPR 266

[Close]

BLAST of HG10004218 vs. ExPASy Swiss-Prot
Match: B2LXS7 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=WHY1 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.6e-38
Identity = 83/185 (44.86%), Postives = 106/185 (57.30%), Query Frame = 0


Query: 141 RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV 200
           R F  +SIYKGKAAL+ +PRPP F PLDSGA+K+++EGFVLLQFAPA   RQYDW+RKQV
Sbjct: 85  RVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144

Query: 201 ------------------------------------------------NADYYSTGVQNK 260
                                                           N  +++  VQN+
Sbjct: 145 FSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNR 204

Query: 261 LINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGD 278
           LINVDESIYIPITKGE+ V+V  F +I+PHLMGW T  ++I KPE+S     + P+   +
Sbjct: 205 LINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFVSSI-KPEESRPY--SRPQSTSE 264

[Close]

BLAST of HG10004218 vs. ExPASy Swiss-Prot
Match: Q8VYF7 (Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WHY2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-19
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 135 AAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYD 194
           AA    R F  +SI+KGKAAL+VEP  P FT +DSG  +I R G +++ F PA G R+YD
Sbjct: 47  AAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYD 106

Query: 195 WSRKQ--------------------------------------------VNAD----YYS 254
           W +KQ                                             +AD    + S
Sbjct: 107 WEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFIS 166

Query: 255 TGVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTI-TKPEDSSRVNNA 278
             V N ++  ++   +P+TK E+ V+  AF F LPH+MGW+ +   + T+   S  V++ 
Sbjct: 167 LSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGHVNTEALPSRNVSHL 226

[Close]

BLAST of HG10004218 vs. ExPASy TrEMBL
Match: A0A5D3BP35 (Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00810 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.0e-98
Identity = 198/290 (68.28%), Postives = 209/290 (72.07%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNT--Q 97
           MLRLQWLSSSLLP+FNPELSPET+SN +LCSLN  RPLLTLTTTRKPSPKCQYSWNT   
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 98  QQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAAL 157
           QQS+FEP SQTDSFS Q+RAG                 AAAALPPRFFVGHSIYKGKAAL
Sbjct: 61  QQSSFEPASQTDSFSPQSRAG-----------------AAAALPPRFFVGHSIYKGKAAL 120

Query: 158 TVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV--------------- 217
           TVEPRPPEFTPLDSGAFKISREG V+LQFAPAAGVRQYDWSRKQV               
Sbjct: 121 TVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALG 180

Query: 218 ---------------------------------NADYYSTGVQNKLINVDESIYIPITKG 277
                                            +  +++  VQNKLINVDESIYIPITK 
Sbjct: 181 PREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKA 240

[Close]

BLAST of HG10004218 vs. ExPASy TrEMBL
Match: A0A1S3C3B0 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496412 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.0e-98
Identity = 198/290 (68.28%), Postives = 209/290 (72.07%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNT--Q 97
           MLRLQWLSSSLLP+FNPELSPET+SN +LCSLN  RPLLTLTTTRKPSPKCQYSWNT   
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 98  QQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAAL 157
           QQS+FEP SQTDSFS Q+RAG                 AAAALPPRFFVGHSIYKGKAAL
Sbjct: 61  QQSSFEPASQTDSFSPQSRAG-----------------AAAALPPRFFVGHSIYKGKAAL 120

Query: 158 TVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV--------------- 217
           TVEPRPPEFTPLDSGAFKISREG V+LQFAPAAGVRQYDWSRKQV               
Sbjct: 121 TVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALG 180

Query: 218 ---------------------------------NADYYSTGVQNKLINVDESIYIPITKG 277
                                            +  +++  VQNKLINVDESIYIPITK 
Sbjct: 181 PREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKA 240

[Close]

BLAST of HG10004218 vs. ExPASy TrEMBL
Match: A0A0A0KG25 (WHY1 OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=2 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 191/290 (65.86%), Postives = 203/290 (70.00%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQ-- 97
           MLRLQ LSSS LP+FNPELSPET+SN +LC+LN  RPL TLTTTRKP+ KCQYSWNTQ  
Sbjct: 1   MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQH 60

Query: 98  QQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAAL 157
           QQSAFEP   TDS S Q+RAG                 AAAALPPRFFVGHSIYKGKAAL
Sbjct: 61  QQSAFEPAPHTDSLSPQSRAGAA--------------AAAAALPPRFFVGHSIYKGKAAL 120

Query: 158 TVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV--------------- 217
           TVEPRPPEFTPLDSGAFKISREG V+LQFAPAAGVRQYDWSRKQV               
Sbjct: 121 TVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALG 180

Query: 218 ---------------------------------NADYYSTGVQNKLINVDESIYIPITKG 277
                                            +  +++  VQNKLINVDESIYIPITK 
Sbjct: 181 PREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKA 240

[Close]

BLAST of HG10004218 vs. ExPASy TrEMBL
Match: A0A6J1G4J7 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450739 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.1e-92
Identity = 190/289 (65.74%), Postives = 202/289 (69.90%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQQ- 97
           MLRLQ LSSSLLP   PELSPET SNR+LC LNSFRPLLTL+TT K SPKCQYSWNTQQ 
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 98  QSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKGKAALT 157
           Q+AFE G QTDSFSSQTRAG                 AAAALPPRFFVGHSIYKGKAALT
Sbjct: 61  QAAFESGFQTDSFSSQTRAG-----------------AAAALPPRFFVGHSIYKGKAALT 120

Query: 158 VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV---------------- 217
           VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV                
Sbjct: 121 VEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGP 180

Query: 218 --------------------------------NADYYSTGVQNKLINVDESIYIPITKGE 277
                                           +  +++  VQNKL NVDESIYIPITK E
Sbjct: 181 RESCELFHDPYKGKSDEGKVRKMLKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAE 240

[Close]

BLAST of HG10004218 vs. ExPASy TrEMBL
Match: A0A6J1DD66 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019296 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.3e-90
Identity = 188/294 (63.95%), Postives = 201/294 (68.37%), Query Frame = 0


Query: 38  MLRLQWLSSSLLPS-FNPELSPET---VSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWN 97
           MLRLQWLSSSLLP   NPELSPET     NR+LC+LNS RPLLTLT TRKPSPKCQYSW+
Sbjct: 1   MLRLQWLSSSLLPPLLNPELSPETSHLCPNRRLCTLNSSRPLLTLTATRKPSPKCQYSWS 60

Query: 98  TQQQS--AFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRFFVGHSIYKG 157
           TQQQ     EPGSQ  SFS QTRAG                 AA ALPPRFFVGHSIYKG
Sbjct: 61  TQQQQPPPSEPGSQAHSFSPQTRAG-----------------AAGALPPRFFVGHSIYKG 120

Query: 158 KAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV----------- 217
           KA LTVEPRPPEFTPLDSGAFK+SREGFVLLQFAPAAGVRQYDWSRKQV           
Sbjct: 121 KAVLTVEPRPPEFTPLDSGAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSL 180

Query: 218 -------------------------------------NADYYSTGVQNKLINVDESIYIP 277
                                                +  +++  VQNKLIN+DESIYIP
Sbjct: 181 IALGLRDSCEFFHDPYKGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIP 240

[Close]

BLAST of HG10004218 vs. TAIR 10
Match: AT1G14410.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-52
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 135 AAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYD 194
           A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S++GF+LLQFAP+AGVRQYD
Sbjct: 74  AEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYD 133

Query: 195 WSRKQV------------------------------------------------NADYYS 254
           WS+KQV                                                +  +++
Sbjct: 134 WSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFN 193

Query: 255 TGVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNAN 278
             VQNKL+NVDESIYIPIT+ E+ VL+ AF F+LP+L+GWH  AN+I KPE++SRVNNA+
Sbjct: 194 LSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWHAFANSI-KPEETSRVNNAS 253

[Close]

BLAST of HG10004218 vs. TAIR 10
Match: AT2G02740.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 201.4 bits (511), Expect = 9.2e-52
Identity = 110/243 (45.27%), Postives = 140/243 (57.61%), Query Frame = 0


Query: 83  KPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRF 142
           KP+ + + +  ++Q   FE     DS SSQ                      A    PRF
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN---------------------AEVSSPRF 106

Query: 143 FVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV-- 202
           +VGHSIYKGKAALT+EPR PEF  L+SGAFK+++EGF+LLQFAPAAGVRQYDWSRKQV  
Sbjct: 107 YVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFS 166

Query: 203 ----------------------------------------------NADYYSTGVQNKLI 262
                                                         +  +++  VQNKL+
Sbjct: 167 LSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLL 226

Query: 263 NVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDFE 278
           NVDES+YIPITK E+ VL+ AF F+LPHL+GW   AN+I KPEDS+R+NNA+P+YGGD+E
Sbjct: 227 NVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSI-KPEDSNRLNNASPKYGGDYE 267

[Close]

BLAST of HG10004218 vs. TAIR 10
Match: AT2G02740.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-51
Identity = 110/244 (45.08%), Postives = 140/244 (57.38%), Query Frame = 0


Query: 83  KPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVVFYFSGSEVLWVGLLVAAAALPPRF 142
           KP+ + + +  ++Q   FE     DS SSQ                      A    PRF
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN---------------------AEVSSPRF 106

Query: 143 FVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV-- 202
           +VGHSIYKGKAALT+EPR PEF  L+SGAFK+++EGF+LLQFAPAAGVRQYDWSRKQV  
Sbjct: 107 YVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFS 166

Query: 203 -----------------------------------------------NADYYSTGVQNKL 262
                                                          +  +++  VQNKL
Sbjct: 167 LSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKL 226

Query: 263 INVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDF 278
           +NVDES+YIPITK E+ VL+ AF F+LPHL+GW   AN+I KPEDS+R+NNA+P+YGGD+
Sbjct: 227 LNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSI-KPEDSNRLNNASPKYGGDY 268

[Close]

BLAST of HG10004218 vs. TAIR 10
Match: AT1G71260.1 (WHIRLY 2 )

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-20
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 135 AAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYD 194
           AA    R F  +SI+KGKAAL+VEP  P FT +DSG  +I R G +++ F PA G R+YD
Sbjct: 47  AAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYD 106

Query: 195 WSRKQ--------------------------------------------VNAD----YYS 254
           W +KQ                                             +AD    + S
Sbjct: 107 WEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFIS 166

Query: 255 TGVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTI-TKPEDSSRVNNA 278
             V N ++  ++   +P+TK E+ V+  AF F LPH+MGW+ +   + T+   S  V++ 
Sbjct: 167 LSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGHVNTEALPSRNVSHL 226

The following BLAST results are available for this feature:

BLAST of HG10004218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884310.1	9.4e-99	69.07	single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Beninca...	[more]
XP_008456468.1	2.1e-98	68.28	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis...	[more]
XP_038884311.1	3.6e-98	68.73	single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 [Beninca...	[more]
XP_011657483.1	2.6e-93	65.86	single-stranded DNA-binding protein WHY1, chloroplastic [Cucumis sativus] >KGN47...	[more]
XP_023546045.1	1.0e-92	66.09	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo sub...	[more]

BLAST of HG10004218 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9S3	2.0e-51	52.88	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q66GR6	1.7e-50	45.08	Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9LL85	4.2e-49	52.91	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=...	[more]
B2LXS7	9.6e-38	44.86	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=W...	[more]
Q8VYF7	2.0e-19	30.21	Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of HG10004218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BP35	1.0e-98	68.28	Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C3B0	1.0e-98	68.28	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A0A0KG25	1.3e-93	65.86	WHY1 OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=2 SV=1	[more]
A0A6J1G4J7	4.1e-92	65.74	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1DD66	2.3e-90	63.95	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Momordica charan...	[more]

BLAST of HG10004218 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14410.1	1.4e-52	52.88	ssDNA-binding transcriptional regulator	[more]
AT2G02740.2	9.2e-52	45.27	ssDNA-binding transcriptional regulator	[more]
AT2G02740.1	1.2e-51	45.08	ssDNA-binding transcriptional regulator	[more]
AT1G71260.1	1.4e-20	30.21	WHIRLY 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 134..201 e-value: 6.4E-28 score: 99.7 coord: 202..264 e-value: 1.1E-12 score: 50.1
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 140..277
IPR013742	Whirly transcription factor	PFAM	PF08536	Whirly	coord: 148..200 e-value: 1.6E-20 score: 73.3
IPR013742	Whirly transcription factor	PANTHER	PTHR31745	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	coord: 204..277 coord: 139..201
None	No IPR available	PANTHER	PTHR31745:SF3	SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC	coord: 204..277 coord: 139..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004218.1	HG10004218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding