HG10004213 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004213
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 14814054 .. 14815514 (-)
RNA-Seq ExpressionHG10004213
SyntenyHG10004213
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCACCGTCGTAGCCGATGGCCTCCGCGGATGGCGTATGAGGAGCCAAGCATATCCATATATATAGTAATATATATGTGTAGTCGGAATTTGAATCTCTAATCTTTGATTTTTTTTAACCTGATCATGTTTTAACTAGTTGAGCTATGTTATGAATCGAGAGTTAACGTTTCTTGATGTTTTGTTGTGTACTTTTTTTCTATTAATGAACGGTGAAGGAGAATTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTGCATTTTCTATGTGTGTGTGTTTTTAACAAAAGTGTTCCGTTTTCTTCGGGCTTTATTTTATTTACTGTAGTGTGTAGCTTAGATTGTTTATAATAAAAATTATTATTATAGATAGCCCTAATTTCTAAGGCTGATGAAGAAAGGGAAAAAGAGAACCCTAACTTCAAAGATTTCATCCAATGCTTAATATATTTCACAATGTATTCCTTTTTTTAATTTATTTTTTTGGCTGCTATTTTCTTCTTCTTTCTCAAGAAGTTTTTAGGGGTTTTTTCTTTTTTTTTTTTTTGATGTGTGTTTTTTTTTCTTTTGCAGAAAGAATATCACAGACTCACAGACAATAATGTACGTCTTTTATTTTAGGGTTTGGACCATTATTTCCCTTAAATTTAGGGGTTTTATTTGGAAATTGGATTATTTTCATTTATTACAATTATACTAAAACATATGCAAATTAATTAGATTAAAGACTAAAAACACCAATAAAAACAAGATATTGTGAAATATATAAACTGACATTGAAGAGGTTGGTAAATAGGTACCTTTTTTAAAAAAAAAAATTGGCTGATATTTTCTTCTTCTTCTTCTTCTTCTTCCTCAAGAAATTTAGGGTTTTTTATGTGATGTTTTTTTCTCTTACAGAAAGAATATCACAGATCCACAGACAATAGTACGTCTTTTATTTTAGTGATATGACCATTATTTCCCTCAGATTTAGGGCTTTTATTTAGAAATTGAATTATTTCCATTTTATTACAAACTCATTTTTTTCTGTTTGTGGTGGAAAATGTATCCATGTTCAAGATTTGTCCTTAGCATCAATATATATATATATATATATATATATATTATCTATTACTAAAACATAAGCAAATTAATTAGATTAAAGATAAAAAAAAATATACAAATAAAAACAAGACATTGTGAAATATATATTGAGTTTAATGTTTGTGATTAGTTAAGCATTGGATGAATTAAGTCTGTGTATATATATATATATAATTTATTATTTAATATTTAATCACATTGGGAAAACGCAATGGAATCTGGATTACATATTATGTATACAAATGTAGAATAGCAAAGGAGTGGAAAAGGCAAGCGACCGAAGATCTCATGCGTTTAAATCTGATCGTGTGGTGATGCGTGCTCCAGAAGAAGGAGTAGGATAG

mRNA sequence

ATGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCACCGTCGTAGCCGATGGCCTCCGCGGATGGCGTATGAGGAGCCAAGCATATCCATATATATAATAGCCCTAATTTCTAAGGCTGATGAAGAAAGGGAAAAAGAGAACCCTAACTTCAAAGATTTCATCCAATGCTTAATATATTTCACAATAAAGAATATCACAGATCCACAGACAATAAATAGCAAAGGAGTGGAAAAGGCAAGCGACCGAAGATCTCATGCGTTTAAATCTGATCGTGTGGTGATGCGTGCTCCAGAAGAAGGAGTAGGATAG

Coding sequence (CDS)

ATGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCACCGTCGTAGCCGATGGCCTCCGCGGATGGCGTATGAGGAGCCAAGCATATCCATATATATAATAGCCCTAATTTCTAAGGCTGATGAAGAAAGGGAAAAAGAGAACCCTAACTTCAAAGATTTCATCCAATGCTTAATATATTTCACAATAAAGAATATCACAGATCCACAGACAATAAATAGCAAAGGAGTGGAAAAGGCAAGCGACCGAAGATCTCATGCGTTTAAATCTGATCGTGTGGTGATGCGTGCTCCAGAAGAAGGAGTAGGATAG

Protein sequence

MPGSLYAICRAHRRSRWPPRMAYEEPSISIYIIALISKADEEREKENPNFKDFIQCLIYFTIKNITDPQTINSKGVEKASDRRSHAFKSDRVVMRAPEEGVG
Homology
[Close]
BLAST of HG10004213 vs. NCBI nr
Match: KAE8647299.1 (hypothetical protein Csa_004166 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 47/112 (41.96%), Postives = 54/112 (48.21%), Query Frame = 0 

Query: 1   MPGSLYAICRA-----HRRSRWPPR-MAYEEPSISIYI-IALISKADEEREKENPNFKDF 60
           MPGSLYAICRA          W  R  AY      +YI + LISKA  +RE+E P  +  
Sbjct: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60

Query: 61  -----IQCLIYFTIKNITDPQTINSKGVEKASDRRSHAFKSDRVVMRAPEEG 101
                I   +YFT +      T N    E   DRRS  F SDR VMR  EEG
Sbjct: 61  HLHFSIYFTMYFTQEKEYHRLTDNKYQKECPIDRRSDEFNSDRAVMRVREEG 112

[Close]
BLAST of HG10004213 vs. NCBI nr
Match: XP_022860934.1 (uncharacterized protein LOC111381387 [Olea europaea var. sylvestris])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 1  MPGSLYAICRAHRRSRWPPRMAYEEPSISIYII 34
          MPGSLYAICRAHRR+  PP MAYEEPSI  Y I
Sbjct: 7  MPGSLYAICRAHRRTDGPPCMAYEEPSIFTYRI 39

[Close]
BLAST of HG10004213 vs. ExPASy TrEMBL
Match: A0A0A0KG30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404290 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 48/118 (40.68%), Postives = 57/118 (48.31%), Query Frame = 0 

Query: 1   MPGSLYAICRA-----HRRSRWPPR-MAYEEPSISIYI-IALISKADEEREKENPNFKD- 60
           MPGSLYAICRA          W  R  AY      +YI + LISKA  +RE+E P  +  
Sbjct: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60

Query: 61  FIQCLIYFTI--------KNITDPQTINSKGVEKAS--DRRSHAFKSDRVVMRAPEEG 101
            +   IYFT+          +TD  T      +K    DRRS  F SDR VMR  EEG
Sbjct: 61  HLHFSIYFTMYFTQEKEYHRLTDNSTPFFLEYQKECPIDRRSDEFNSDRAVMRVREEG 118

The following BLAST results are available for this feature:
BLAST of HG10004213 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647299.11.3e-0541.96hypothetical protein Csa_004166 [Cucumis sativus][more]
XP_022860934.11.9e-0478.79uncharacterized protein LOC111381387 [Olea europaea var. sylvestris][more]
BLAST of HG10004213 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10004213 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG305.3e-0540.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404290 PE=4 SV=1[more]
BLAST of HG10004213 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004213.1HG10004213.1mRNA