HG10004187 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004187
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Small polypeptide DEVIL 8
Location	Chr08: 14561330 .. 14561524 (-)
RNA-Seq Expression	HG10004187
Synteny	HG10004187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGAAAGAAGAAGGCTTTGCAAGAAGGAAGCAATAAGAGACTCGTCATCGACTTGTCGTAGGAAATCAGGAACGACGTCGTTTAAGCAGAAGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCTAGGTTTTATATTCTTCGCCGATGTGTCGTCATGCTCATCTGTTGGAATTACTATGCTGACCCTTAA

mRNA sequence

ATGCTGGAAGAAAGAAGAAGGCTTTGCAAGAAGGAAGCAATAAGAGACTCGTCATCGACTTGTCGTAGGAAATCAGGAACGACGTCGTTTAAGCAGAAGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCTAGGTTTTATATTCTTCGCCGATGTGTCGTCATGCTCATCTGTTGGAATTACTATGCTGACCCTTAA

Coding sequence (CDS)

ATGCTGGAAGAAAGAAGAAGGCTTTGCAAGAAGGAAGCAATAAGAGACTCGTCATCGACTTGTCGTAGGAAATCAGGAACGACGTCGTTTAAGCAGAAGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCTAGGTTTTATATTCTTCGCCGATGTGTCGTCATGCTCATCTGTTGGAATTACTATGCTGACCCTTAA

Protein sequence

MLEERRRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNYYADP

Homology

[Close]

BLAST of HG10004187 vs. NCBI nr
Match: KAG7016303.1 (hypothetical protein SDJN02_21410, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MLEERRRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNY 60
          M+EERRRLC+ E +RDSSS C R+S T SFKQ+CSLLVKEQRARFYILRRCVVML+CWNY
Sbjct: 1  MMEERRRLCRGE-VRDSSSACSRRSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60

Query: 61 YADP 65
          YADP
Sbjct: 61 YADP 63

[Close]

BLAST of HG10004187 vs. NCBI nr
Match: KAE8647306.1 (hypothetical protein Csa_004317 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MLEERRRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNY 60
          M EERRRLCK    R  SS C R+SGT SFKQ+CSLLVKEQRARFYILRRCVVML+CWNY
Sbjct: 1  MTEERRRLCK----RTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60

Query: 61 YADP 65
          YADP
Sbjct: 61 YADP 60

[Close]

BLAST of HG10004187 vs. NCBI nr
Match: KAA0036490.1 (DVL-like protein [Cucumis melo var. makuwa] >TYJ99996.1 DVL-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MLEERRRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNY 60
          M EE RRLCK    R SSS C R+SGT SFKQ+CSLLVKEQRARFYILRRCVVML+CWNY
Sbjct: 1  MTEEGRRLCK----RTSSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60

Query: 61 YADP 65
          YADP
Sbjct: 61 YADP 60

[Close]

BLAST of HG10004187 vs. NCBI nr
Match: GFP93571.1 (hypothetical protein PHJA_001501500 [Phtheirospermum japonicum])

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-09
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 2  LEERRRLCKKEAIRDSSSTCRRKS--GTTSFKQKCSLLVKEQRARFYILRRCVVMLICWN 61
          L+E+ +L KKE++   S +CRR S  G  SF +KC+ LVKEQRARFYI+RRCV MLICW 
Sbjct: 9  LDEKWKLSKKESL---SRSCRRSSFTGKCSFTRKCAALVKEQRARFYIVRRCVTMLICWR 68

Query: 62 YYAD 64
           Y+D
Sbjct: 69 DYSD 69

[Close]

BLAST of HG10004187 vs. NCBI nr
Match: XP_019085765.1 (PREDICTED: uncharacterized protein LOC109126550 [Camelina sativa])

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 7  RLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICW----NYYA 64
          +L KKE   D+    R+K G  SF +KC  LVKEQRARFYI+RRCVVMLICW    N Y+
Sbjct: 11 QLSKKERFGDNEGMSRQKQGKYSFTRKCGRLVKEQRARFYIMRRCVVMLICWTDNHNTYS 70

[Close]

BLAST of HG10004187 vs. ExPASy Swiss-Prot
Match: Q6IM93 (Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 7  RLCKKEAIRD------SSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICW 59
          +L KKE++ D      ++ + R+K G   F +KC  LVKEQRARFYI+RRCVVMLICW
Sbjct: 11 QLSKKESLGDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]

BLAST of HG10004187 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.2e-09
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 2  LEERRRLCKKEA----IRDSSSTCR-----RKSGTTSFKQKCSLLVKEQRARFYILRRCV 61
          L+E+ +L KK+     I  SSST       +K G  +F +KC+ LVKEQRARFYI+RRCV
Sbjct: 15 LDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCV 74

Query: 62 VMLICW-NYYAD 64
          +MLICW + Y+D
Sbjct: 75 IMLICWRDNYSD 86

[Close]

BLAST of HG10004187 vs. ExPASy Swiss-Prot
Match: Q7XXN8 (Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 29 SFKQKCSLLVKEQRARFYILRRCVVMLICWN 60
          +F QKCS +VK+QRA+FYILRRC+ ML+CW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of HG10004187 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-06
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 6   RRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNYYAD 64
           R   +KE  R SSS     S ++S  QK S L KEQ+ARFYI+RRCV ML+CW+ + D
Sbjct: 64  RSFSRKE--RRSSS-----SSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of HG10004187 vs. ExPASy Swiss-Prot
Match: Q6IM82 (Small polypeptide DEVIL 19 OS=Arabidopsis thaliana OX=3702 GN=DVL19 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 29 SFKQKCSLLVKEQRARFYILRRCVVMLICWNYYAD 64
          +F  KC  LVKEQRAR YILRRC  ML CW  + D
Sbjct: 13 AFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47

[Close]

BLAST of HG10004187 vs. ExPASy TrEMBL
Match: A0A5A7SZH0 (DVL-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00410 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MLEERRRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNY 60
          M EE RRLCK    R SSS C R+SGT SFKQ+CSLLVKEQRARFYILRRCVVML+CWNY
Sbjct: 1  MTEEGRRLCK----RTSSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60

Query: 61 YADP 65
          YADP
Sbjct: 61 YADP 60

[Close]

BLAST of HG10004187 vs. ExPASy TrEMBL
Match: A0A6A4NZ03 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00022379 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 2  LEERRRLCKKE--AIRDSSSTCRRKSGTT----SFKQKCSLLVKEQRARFYILRRCVVML 61
          ++E+ +L KKE  + R+ SST      TT    +F +KC+ LVKEQRARFYI+RRCVVML
Sbjct: 22 IDEKWKLSKKERFSSRNHSSTTLLMKDTTQKKCAFARKCARLVKEQRARFYIMRRCVVML 81

Query: 62 ICWNYYAD 64
          ICWN Y+D
Sbjct: 82 ICWNEYSD 89

[Close]

BLAST of HG10004187 vs. ExPASy TrEMBL
Match: A0A445DQI8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011366 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 7   RLCKKE---AIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNYYAD 64
           +L KKE   ++R  S + + KS ++S+  KC+ LVKEQRARFYI+RRCVVMLICW++Y+D
Sbjct: 49  KLSKKEGPTSLRMGSKSTKSKSKSSSWCAKCANLVKEQRARFYIIRRCVVMLICWSHYSD 108

[Close]

BLAST of HG10004187 vs. ExPASy TrEMBL
Match: A0A072V006 (Rotundifolia-like protein OS=Medicago truncatula OX=3880 GN=MTR_3g067980 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 2  LEERRRLCKKEAIR--DSSSTCRRKSGTT-----SFKQKCSLLVKEQRARFYILRRCVVM 61
          L+E+ +L KKE+ R   S+S+   K+ +T     +F +KCS LVKEQRARFYI+RRCVVM
Sbjct: 23 LDEKWKLSKKESSRSLSSNSSFVNKNSSTHHKKCTFARKCSRLVKEQRARFYIMRRCVVM 82

Query: 62 LICWN-YYAD 64
          LICWN +Y+D
Sbjct: 83 LICWNDHYSD 92

[Close]

BLAST of HG10004187 vs. ExPASy TrEMBL
Match: A0A438JXM7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_010174 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 2  LEERRRLCKKEAIRDSSSTCRRKSGTT----SFKQKCSLLVKEQRARFYILRRCVVMLIC 61
          L+E+ +L KKE  R  SST      ++    SF +KC+ LVKEQRARFYI+RRCV MLIC
Sbjct: 16 LDEKWKLSKKEGSRSRSSTSPLMRNSSQRRCSFTRKCASLVKEQRARFYIVRRCVTMLIC 75

Query: 62 WNYYAD 64
          W  Y+D
Sbjct: 76 WREYSD 81

[Close]

BLAST of HG10004187 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 7  RLCKKEAIRD------SSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICW 59
          +L KKE++ D      ++ + R+K G   F +KC  LVKEQRARFYI+RRCVVMLICW
Sbjct: 11 QLSKKESLGDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]

BLAST of HG10004187 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-10
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 2  LEERRRLCKKEA----IRDSSSTCR-----RKSGTTSFKQKCSLLVKEQRARFYILRRCV 61
          L+E+ +L KK+     I  SSST       +K G  +F +KC+ LVKEQRARFYI+RRCV
Sbjct: 15 LDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCV 74

Query: 62 VMLICW-NYYAD 64
          +MLICW + Y+D
Sbjct: 75 IMLICWRDNYSD 86

[Close]

BLAST of HG10004187 vs. TAIR 10
Match: AT2G36985.1 (DVL family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 29 SFKQKCSLLVKEQRARFYILRRCVVMLICWN 60
          +F QKCS +VK+QRA+FYILRRC+ ML+CW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of HG10004187 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-07
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 6   RRLCKKEAIRDSSSTCRRKSGTTSFKQKCSLLVKEQRARFYILRRCVVMLICWNYYAD 64
           R   +KE  R SSS     S ++S  QK S L KEQ+ARFYI+RRCV ML+CW+ + D
Sbjct: 64  RSFSRKE--RRSSS-----SSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of HG10004187 vs. TAIR 10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9 )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 29 SFKQKCSLLVKEQRARFYILRRCVVMLICWNYYAD 64
          +F  KC+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

The following BLAST results are available for this feature:

BLAST of HG10004187 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016303.1	3.4e-20	81.25	hypothetical protein SDJN02_21410, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8647306.1	1.4e-18	79.69	hypothetical protein Csa_004317 [Cucumis sativus]	[more]
KAA0036490.1	2.5e-18	79.69	DVL-like protein [Cucumis melo var. makuwa] >TYJ99996.1 DVL-like protein [Cucumi...	[more]
GFP93571.1	7.9e-09	59.38	hypothetical protein PHJA_001501500 [Phtheirospermum japonicum]	[more]
XP_019085765.1	3.0e-08	59.02	PREDICTED: uncharacterized protein LOC109126550 [Camelina sativa]	[more]

BLAST of HG10004187 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IM93	6.3e-09	55.17	Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1	[more]
Q8S8S3	8.2e-09	51.39	Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1	[more]
Q7XXN8	2.2e-06	67.74	Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1	[more]
Q8L7D0	3.8e-06	51.72	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
Q6IM82	1.9e-05	62.86	Small polypeptide DEVIL 19 OS=Arabidopsis thaliana OX=3702 GN=DVL19 PE=3 SV=1	[more]

BLAST of HG10004187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZH0	1.2e-18	79.69	DVL-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G004...	[more]
A0A6A4NZ03	5.5e-08	55.88	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00022379 PE=4 SV=1	[more]
A0A445DQI8	5.5e-08	56.67	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011366 PE=4 SV=1	[more]
A0A072V006	1.2e-07	55.71	Rotundifolia-like protein OS=Medicago truncatula OX=3880 GN=MTR_3g067980 PE=4 SV...	[more]
A0A438JXM7	1.2e-07	54.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_010174 PE=4 SV=1	[more]

BLAST of HG10004187 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55515.1	4.5e-10	55.17	ROTUNDIFOLIA like 7	[more]
AT2G39705.1	5.8e-10	51.39	ROTUNDIFOLIA like 8	[more]
AT2G36985.1	1.6e-07	67.74	DVL family protein	[more]
AT2G29125.1	2.7e-07	51.72	ROTUNDIFOLIA like 2	[more]
AT1G53708.1	1.3e-06	62.86	ROTUNDIFOLIA like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 39..57 e-value: 2.2E-12 score: 46.5
None	No IPR available	PANTHER	PTHR33102:SF51	ROTUNDIFOLIA-LIKE PROTEIN	coord: 10..63
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 10..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004187.1	HG10004187.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane