HG10004183 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004183
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	S4 RNA-binding domain-containing protein
Location	Chr08: 14518528 .. 14524050 (-)
RNA-Seq Expression	HG10004183
Synteny	HG10004183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATTAGCATCTTCTTCACTCTCATTTCTCTCAAAACCTTCCTATATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCAAATTCCACTCCCAAGTCCTCCTCTTCCTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCTCCAAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAACCACCGGCGGTCAGCTCTTCATTCCTTGGATAGTTCGCGGCGAAGATGGCAGCCTCAAGCTCCAATCTCATCCTCCTACACGGTTTCTTCATTCCATGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCGCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGGTTTGTATTTCTCTTATTAAAATGCTAATTATGGCTTATAATAGCTCGGCATGTCTTGTTACTCAGCATTATTTTGTGCTTGTTGGTGTTTGGTTCTTGGTGTGGTGGTTAGTCGTTTTTATTTGGGTTATTTTGGAAAAATATTTAGTTATTTCGACAACGGGTTTTGGCAATAGGACGGAAGCATCCACTTCTAGTTTAGTTAGTATTAGAATTTGTAAGTATAGTTGTGCGAATCGATGCTAAAGGTGATTTTACTTGGCATGAACTTCAAGTTATTTATTACATGTGGATAGAATGGAGAGATTGAACAATTTGAGCGGTTTCTACACCAGTGTTATGCGATATACGAGCTTAATTATAGCTTCCACCAACAACTATACTTCAAGAAAAAAGAACCAAAACAGTACAACGGACCCAGATACTAACAAAGGCTCTAATCTATTTAGTAGAGGAAAAGTTGATAGGAGCTCAAGCTCTTCCATCTTGCAGCCTTCTTTTATTCTTGTTCTAGCGACATCTTCTTATTTGCGGTCTTCTCTTTTTCTCACTGTCTATGCATACTTTTTAATTTTTCTGTTTGGTAGTATGTGCGTTGTTAATTGCTGTTTGTTTGGTTTAAGGGCAATTCTTCTCTTTGAGCTCCATTCTCCTTGTAAAACCACGAATGGCAGACTATGTAAATTGACATGTACTGTAAAAATACGTTTTGGTAAGCCATGATAATATGATCGATTGTTTATAAAATTAAATGTTGGAACATTTGGCCCGAGAGAAACTGGAAGAGGTAGAGATATCTCGTGGTAGGCGCTTAAGTTGGAATCTTCCTGTAGAATACCATGTTGTTTCCAGCTAGCCCCAACCCCTGTTAGGAGGAGGGCTGCGGATGAAAGTTCAGTTGTATACAATTTGGTCGAGCTTTTAAGGATAAATTCTAATTGTTAATTTCTATGAAAACTTCTAAAGCAATCTACTTGATCCTTCTTTTGTGTTCTATTGTTTAGCATTGGTCAGGGAGTGTTTTGTTTTGTCTTCTTCTGCAGTGTCTTGTTTACATTAATTACCATTGTCCCCATAAGATCTCATAGTAGGTATTGTACTCCTCTTTTATTTGTCAGTGGCATCAAGACGGAGCAGTGAAGAACTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTTTGCAATACTCCTCAGGTTAGTTTTCATATCATTTGGGTTGGATAGATTTTGTCTTAATTATGAAGGAATAAATCATTTCACCTTTCTTCAGACTCGGGTAGATCCTGCAAGAGACGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAATTACCACAAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTAGGTCACTTATTCTCTGAGATCAATTTCCCTTTCCTTCCCCAAGCTTCTCTTGGGAATTTGGCTTTTATGTGCTTCCGTTGCTCATCTTATAAAATGCCACGGCAGGTATATTTGTTCATCTGGGAAAAAGGAATCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGTATGTCAAACTCAAACCTACTAATCACACCGTGTTCAAGCAAAAGATTAGAAAGTAGTGATAATCTTATGATCATTTTGATACCTGAAATATTGTTTGCAAGTCATTGAACTAAAACTTTGCATTTGCAGGATAAAACATATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACAACTGGGTTGATTATAGTGACAAATGATGGTATGCTATACAAACTTCTCATGGTTGCCTCCTTATTTAGGATTGCTGTACAAAAAGTTTGGAGTGAAAAGGATAGATCTTGAACAATTTGCAAAATTACCGTTGATTTTCTTTTTCAGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAGTAAGTGATTTAAATTTATTTTCTTACTCTTGCTGATGCATTGTAAAGTTACCTACAAAATTAACTTTTGGCATTATTTTCATGGAGTAATTTAGAGATCAACAGATTTTTTAAAATCTTTGAGACCATAAACTTCATAACAGGAATTATTGTGGGCTATGGCCTATAAATCTGTGGCGTATTTATTGAATGAAAATTGCTGGAACCGTTACCTATTGGCCATTTCAGGGATGAGAATATTGTACTGATCTTCCTTTTTAGTTCTTTTTTCCCTATAAAAATTTGAATTAGAGCATTTTCTTTTTTATATTGTGCTTCCCAGTACATATAGCTTTTAAAGTTTCGAATGTTGGATTTCTGAGAAATGAAAATGCAACATTTGCCCTTTATAATTGTAGATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAACAATCAGTGAGGGAACAATAATTGATGGTGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGGCAGCCAGATGTATCAAGGCCTCGTCTGCGTATCGTGGTGCTTTATCCATCCATATTATAGTTTTTAAATATCTATCCACTTTCAGCACATTCATTACTTCTTGTTTGATCTAATTGGTCATGAAGTAATGATTGTATAGGCCAACAAAGTCTGATGCTTTGTACCTTCAATGTTGTTGGTCTGAGTTTTACTCTATTATTGTTGATGCTATACGGCAGTCTGGAGGAAAATGTATTGATACCTTTTTTCTGCATGCAGCGCTTGTCATGCATTAGCTTCCAACTAACTTACTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTGGAGGTTAGCATCTGACCTTCTTTAAGACACTTGCCCATTACTGTGATACTTTCCCACCATAGCCATATAAGATACAAATTAAGTAATACTATTTCACTTTTTTCATAATACTTTCTTAATAATAATAATAATAAGAAGAAGAAGAAATAATTTCATTGATGGTATGAAATTTGAAGGGGAAGGGGGAAGCCCACTCCAAAGGAGTTGCAAAAAGGCTTTCCAGTTGGAAATAAGGCCTTTCTTAATATTTTGATCAAGTCTGTTCTGCCCTTGTGTTTTGTTCAGATAGCTTTTCAATTTTTCAGTACACTAAGCTTTATTTATTTATTATTATTTATTTAAATAAGAAACCTGTAGATATAGTACTAGAGCAACCGCCTCTTCAATGAAAAGGGAAGCTCTTGTGACACTTTCTCTGAACATACTATCTATCTTGCTAGTTGCTATGACTTGGTGGAAATGTACATCTTTTTTCAATTCATATGATCTTACATCTCTTTTGACCAATTGGAGAAGTCTTCTATAACTCCATTGGATTGGGCATCTTTCCCATCTTTTGTAAATTTCATACATCAATGAAATTTATTTCTTATAAAAAAAGAAGATATATTACTAGAGCAAAGGAAAGAATGAGGAGCAGGGGGAGGAGGAATCCCCCTCCCAGAGATGGCTAATTACAAAAAAAAAAAACTTCCAATTGTGACGGATCAACGAAATTGGATAGTTACAAAAGAGTTTTTGGTTGCCATGGCACACCAAGAAAAGGAACTCTTTTATTATAGATCTTTTGATGCTATAGTTAGTACTCTTGTGACTTGTGTAAATGCTCCCTTATTCCATTGCTATTGTTTTTCTAGTCTCCTTTCAAATTGGAAATGTCTTTTGTAATCTCTCTATTGGGGCTTCCCCTTCTTTTGTAATCTCATACCATCAATAAAATTGTTTCTTATAAAAAAAAGGTCTCATTTTCTTTTTGGAGGGCATTGTTGTATCTTTTTCTTCCTGTTGGTACCTCTGTATTATAGGCCTCTATTTTTTACGACTATATTTCTTCATGGAGGATTTGTTTTGAACCTATAAATATAAACGCTTATTTACCTACCTGTTGCGAGTTTTTATTATTTATTTATTATTTTTTCATTCATGATAACCGGATTAAATACTTGGACATGAGGAAACTGGGAATCTGACATCAAGGGATCTACCTTTTTAGTGCCATTTCAACTACTTGTTCTATTGTTTGAGTTTGTCTGCTAGTTCCATTTGTATGTGTAATTTCTGGAATTTATTGAAACAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTGGGGTAATTTCTTGTTATGATCACCTTTGATCTGTTTCTTTGTTGAACTTATAAATGTTTGGGAATGGGCACAGAATCAGATTAGATGATTCAGTTGCAATTCATTTTCACATAACAGAAACCAAGTAATAAAGGTAAATAATTTCTTATTATTTTGCACGTAAGTATTCGAAAATGTTGGTGAATAGTACGTGTCAGTATGTTATAATTACGATGATATTATTAGATGTCAAAAAACTAGCCAAATAAAAATGTATCTTTCAACCGAACAACGAAGATTTTAAAAGTTTATTCTTGAAGATAAATTGAAAATAAAACAATTTTAATCTTGAAAATAAAATTTATCACAAACGATGATCAGGTGGATAAGATTCATTCTCGCTGTCCTCAAATCTATCTTCAACAATTCCTTTTTTACCTTCGGCCACAACCCTCAAGATTGGGCAACAAACTACTCCCCCTCCCCCCCTCTTTTTACAGTTTTTCGAGATGAAACTAGAAAATGCTTCGAAGTTTCAACTTGTGAACACGAGTATTCAGATAAAATGCAATGCCATGTAGATTTATTGAAAAAAATTTCGCATTATTTCAGGCTTGGAAGTTACACTGAACTAAAACAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTGAGTTTCTGATGGCTACGTAGTCGTCCATAGTTGTTGTAGCTTGAATGTGGTAGGAGTGATTTCAGACATACCACATGCATGGAAGCAGAGTACTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCATGCTTCATGCCATGGCCATTGATTATTTACAGTGATGATTGGGTTGAAGATTTCAGTCAACATTGA

mRNA sequence

ATGGTTTCATTAGCATCTTCTTCACTCTCATTTCTCTCAAAACCTTCCTATATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCAAATTCCACTCCCAAGTCCTCCTCTTCCTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCTCCAAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAACCACCGGCGGTCAGCTCTTCATTCCTTGGATAGTTCGCGGCGAAGATGGCAGCCTCAAGCTCCAATCTCATCCTCCTACACGGTTTCTTCATTCCATGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCGCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGCAGTGAAGAACTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTAGATCCTGCAAGAGACGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAATTACCACAAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAGGAATCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACAACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAACAATCAGTGAGGGAACAATAATTGATGGTGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGGCAGCCAGATGTATCAAGGCCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTGGAGAGTACTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCATGCTTCATGCCATGGCCATTGATTATTTACAGTGATGATTGGGTTGAAGATTTCAGTCAACATTGA

Coding sequence (CDS)

ATGGTTTCATTAGCATCTTCTTCACTCTCATTTCTCTCAAAACCTTCCTATATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCAAATTCCACTCCCAAGTCCTCCTCTTCCTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCTCCAAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAACCACCGGCGGTCAGCTCTTCATTCCTTGGATAGTTCGCGGCGAAGATGGCAGCCTCAAGCTCCAATCTCATCCTCCTACACGGTTTCTTCATTCCATGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCGCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGCAGTGAAGAACTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTAGATCCTGCAAGAGACGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAATTACCACAAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAGGAATCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACAACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAACAATCAGTGAGGGAACAATAATTGATGGTGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGGCAGCCAGATGTATCAAGGCCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTGGAGAGTACTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCATGCTTCATGCCATGGCCATTGATTATTTACAGTGATGATTGGGTTGAAGATTTCAGTCAACATTGA

Protein sequence

MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVSADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLESTTSLTAGTVYEHLKRLDTVYSSSCFMPWPLIIYSDDWVEDFSQH

Homology

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BLAST of HG10004183 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 684.9 bits (1766), Expect = 4.3e-193
Identity = 348/360 (96.67%), Postives = 355/360 (98.61%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLSFLSKPS+ILNPIRAIPRISCSLSSNSTP +SSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKSEVE PFQFIDR TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           ADKRPTEPPKHSKAARRFYNENIRD+SQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGTIIDG+HCTPDSVELLPRQPD+SRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

[Close]

BLAST of HG10004183 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 656.8 bits (1693), Expect = 1.3e-184
Identity = 337/360 (93.61%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPS I NPIRAIPRISCSLSSNS P +SSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKSEVEDPFQFIDR +GGQLFIPWIVRGEDG+LKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDGTV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGTIIDGVHCTPDSVELLPRQPD+S+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

[Close]

BLAST of HG10004183 vs. NCBI nr
Match: XP_016901969.1 (PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis melo])

HSP 1 Score: 654.8 bits (1688), Expect = 4.8e-184
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLSFLSKPS I N IRAIPRISCSLSSNSTP  ++SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTP--NASSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDR TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPD+SRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 358

[Close]

BLAST of HG10004183 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 654.8 bits (1688), Expect = 4.8e-184
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLSFLSKPS I N IRAIPRISCSLSSNSTP  ++SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTP--NASSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDR TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPD+SRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 358

[Close]

BLAST of HG10004183 vs. NCBI nr
Match: XP_022956132.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita moschata] >XP_023515775.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6602297.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 636.3 bits (1640), Expect = 1.7e-178
Identity = 325/360 (90.28%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSLS LSKPS ILNPIRAI RISCSLSSNS P  SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+ TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPD+ R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

[Close]

BLAST of HG10004183 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.4e-122
Identity = 243/391 (62.15%), Postives = 284/391 (72.63%), Query Frame = 0


Query: 1   MVSLASSS-----LSFLSKPSYILNP-IRAIPRISCSLSSNSTPKSSSSSSSSLEFNITF 60
           M S+A+SS      SFL   ++ L+P    I  + CS+        SSSSS  +EF+I+F
Sbjct: 1   MASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSV--------SSSSSEPIEFDISF 60

Query: 61  APPKPKPKSEVEDPFQFIDRTTGG----QLFIPWIVRGEDGSLKLQSHPPTRFLHSMSED 120
           APPKPKP S           T GG    QLFIPWIVR +DG+LKLQS PP R +H+++ D
Sbjct: 61  APPKPKPSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAID 120

Query: 121 ET--KPKKKKVSADKRPTE-------------------PPKHSKAARRFYNENIRDSSQR 180
            T   PKKK  S  K+P                      PK SKAARRFYNEN ++  QR
Sbjct: 121 ATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQR 180

Query: 181 LSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQK 240
           LSKVLAAAGVASRR+SEELIF+G+VTVNG +CNTPQTRVDP+RD+IYVNGNR+PKKLP K
Sbjct: 181 LSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPK 240

Query: 241 VYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLI 300
           VY ALNKPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI
Sbjct: 241 VYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLI 300

Query: 301 IVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELLPR 360
           +VTNDGDFAQ +SHPSS L KEYI  + G + K++L+ ISEGT+++GVHC PDSVEL+P+
Sbjct: 301 VVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPK 360

[Close]

BLAST of HG10004183 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-28
Identity = 76/213 (35.68%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 148 QRLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLP 207
           +RL KV+A AGVASRR +EELI EG+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 QKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K+  +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A + G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 361
                     +++ +HEGRN +VR + +A G E
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHE 200

[Close]

BLAST of HG10004183 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-28
Identity = 78/212 (36.79%), Postives = 116/212 (54.72%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           R++K L+ AGVASRR +E+LI EGRV VNG V  +   +V+P  D++ V+G   P K  +
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A ++G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDVSRPRLRIVVHEGRNHEVRELVKAAG 359
           +  + +     L I  HEGR H V+  + A G
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFG 200

[Close]

BLAST of HG10004183 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-27
Identity = 81/211 (38.39%), Postives = 116/211 (54.98%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           RL K+L+ AG+ASRR++E+LI EGRV V+G +     TRVDP   V+ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++            +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A + G V +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDVSRPRLRIVVHEGRNHEVRELVKAAG 359
              P   +  +R+ +HEGR   VR L+ AAG
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAG 215

[Close]

BLAST of HG10004183 vs. ExPASy Swiss-Prot
Match: P9WHQ0 (Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1751.1 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.5e-27
Identity = 81/210 (38.57%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           RL KVL+ AG+ASRR++E++I +GRV V+G V     TRVDP   V+ V+G R+      
Sbjct: 15  RLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGARVVLD-DS 74

Query: 209 KVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGL 268
            VYLALNKP+G   +      +  I    D +   ++   G  K  LF VGRLD  T GL
Sbjct: 75  LVYLALNKPRGMHSTMSDDRGRPCIG---DLI---ERKVRGTKK--LFHVGRLDADTEGL 134

Query: 269 IIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELLP 328
           +++TNDG+ A  + HPS  + K Y+A + G+V +    T+  G  +D      D   ++ 
Sbjct: 135 MLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIELDDGPAFVDDFAVVD 194

Query: 329 RQPDVSRPRLRIVVHEGRNHEVRELVKAAG 359
             P   +  +R+ +HEGRN  VR L+ AAG
Sbjct: 195 AIP--GKTLVRVTLHEGRNRIVRRLLAAAG 213

[Close]

BLAST of HG10004183 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 2.3e-184
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLSFLSKPS I N IRAIPRISCSLSSNSTP  ++SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTP--NASSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDR TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPD+SRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 358

[Close]

BLAST of HG10004183 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 2.3e-184
Identity = 338/360 (93.89%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLSFLSKPS I N IRAIPRISCSLSSNSTP  ++SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTP--NASSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDR TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPD+SRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 358

[Close]

BLAST of HG10004183 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 8.5e-179
Identity = 325/360 (90.28%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSLS LSKPS ILNPIRAI RISCSLSSNS P  SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+ TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPD+ R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

[Close]

BLAST of HG10004183 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.4e-178
Identity = 324/360 (90.00%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MVSLASSSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSLS LSKPS ILNPIRAI RISCSLSSNS P  SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+ TGGQLFIPWIVRGEDG+LKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPD+ R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

[Close]

BLAST of HG10004183 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 632.5 bits (1630), Expect = 1.2e-177
Identity = 331/363 (91.18%), Postives = 341/363 (93.94%), Query Frame = 0


Query: 1   MVSLAS--SSLSFLSKPSYILNPIRAIPRISCSLSSNSTPKSSSSSSSSLEFNITFAPPK 60
           M SLA+  SSLS LSKPS+ILNPIRAIPRISCSLSSNS P  ++SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAP--NASSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRTTGGQLFIPWIVRGEDGSLKLQSHPPTRFLHSMSEDETKPKKKK 120
           PKPKSE++ PFQFID  TGGQL IPWIVRGEDG+L+LQSHPPTRFL SMSE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSADKR-PTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180
            SADKR P  PPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARDVIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAA 360
           G VSKQNLI ISEGTIIDGVHCTPDSVELLPRQPDVSR RLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

[Close]

BLAST of HG10004183 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 440.3 bits (1131), Expect = 1.7e-123
Identity = 243/391 (62.15%), Postives = 284/391 (72.63%), Query Frame = 0


Query: 1   MVSLASSS-----LSFLSKPSYILNP-IRAIPRISCSLSSNSTPKSSSSSSSSLEFNITF 60
           M S+A+SS      SFL   ++ L+P    I  + CS+        SSSSS  +EF+I+F
Sbjct: 1   MASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSV--------SSSSSEPIEFDISF 60

Query: 61  APPKPKPKSEVEDPFQFIDRTTGG----QLFIPWIVRGEDGSLKLQSHPPTRFLHSMSED 120
           APPKPKP S           T GG    QLFIPWIVR +DG+LKLQS PP R +H+++ D
Sbjct: 61  APPKPKPSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAID 120

Query: 121 ET--KPKKKKVSADKRPTE-------------------PPKHSKAARRFYNENIRDSSQR 180
            T   PKKK  S  K+P                      PK SKAARRFYNEN ++  QR
Sbjct: 121 ATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQR 180

Query: 181 LSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQK 240
           LSKVLAAAGVASRR+SEELIF+G+VTVNG +CNTPQTRVDP+RD+IYVNGNR+PKKLP K
Sbjct: 181 LSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPK 240

Query: 241 VYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLI 300
           VY ALNKPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI
Sbjct: 241 VYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLI 300

Query: 301 IVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLITISEGTIIDGVHCTPDSVELLPR 360
           +VTNDGDFAQ +SHPSS L KEYI  + G + K++L+ ISEGT+++GVHC PDSVEL+P+
Sbjct: 301 VVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPK 360

[Close]

BLAST of HG10004183 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 306 ITISEGTIIDGVHCTPDSVELLPRQPDVSRPRLRIVVHEGRNHEVRELVKAAGLE 361
           + ISEGT+++G+HC PD VEL+P+Q D+ R  LRIVVHEGRNHEVRELVK  GLE
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLE 55

The following BLAST results are available for this feature:

BLAST of HG10004183 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884576.1	4.3e-193	96.67	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben...	[more]
XP_004140075.1	1.3e-184	93.61	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]
XP_016901969.1	4.8e-184	93.89	PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis ...	[more]
XP_008456519.1	4.8e-184	93.89	PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi...	[more]
XP_022956132.1	1.7e-178	90.28	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]

BLAST of HG10004183 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L960	2.4e-122	62.15	Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A...	[more]
P35159	2.7e-28	35.68	Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16...	[more]
O67444	2.7e-28	36.79	Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V...	[more]
O05668	2.9e-27	38.39	Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai...	[more]
P9WHQ0	6.5e-27	38.57	Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosi...	[more]

BLAST of HG10004183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I9	2.3e-184	93.89	uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX...	[more]
A0A1S4E166	2.3e-184	93.89	ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3...	[more]
A0A6J1GVH4	8.5e-179	90.28	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1JT41	1.4e-178	90.00	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1BVE6	1.2e-177	91.18	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M...	[more]

BLAST of HG10004183 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39140.1	1.7e-123	62.15	pseudouridine synthase family protein	[more]
AT3G43340.1	1.8e-16	69.09	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 148..207 e-value: 2.8E-14 score: 63.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 148..190 e-value: 3.7E-11 score: 42.6
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 148..215 e-value: 4.36263E-11 score: 56.489
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 211..353 e-value: 7.4E-16 score: 58.6
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 211..287 e-value: 3.8E-36 score: 126.1
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	GENE3D	3.30.70.1560		coord: 288..360 e-value: 3.8E-36 score: 126.1
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 144..204 e-value: 5.6E-19 score: 69.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR47683	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	coord: 38..361
None	No IPR available	PROSITE	PS50889	S4	coord: 148..217 score: 14.38512
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 117..230
IPR018496	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	PROSITE	PS01149	PSI_RSU	coord: 259..273
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 210..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004183.1	HG10004183.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0032544	plastid translation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016866	intramolecular transferase activity