HG10004177 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004177
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	Chr08: 14462702 .. 14463481 (-)
RNA-Seq Expression	HG10004177
Synteny	HG10004177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGAAGAAGATGATTAA

mRNA sequence

ATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGAAGAAGATGATTAA

Coding sequence (CDS)

ATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGAAGAAGATGATTAA

Protein sequence

MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVVEKKKAKKASYFSDESEEDD

Homology

[Close]

BLAST of HG10004177 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 490.3 bits (1261), Expect = 9.9e-135
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG ENVV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES+EDD
Sbjct: 241 EKKKAKKASYFSDESDEDD 259

[Close]

BLAST of HG10004177 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 484.6 bits (1246), Expect = 5.4e-133
Identity = 249/259 (96.14%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of HG10004177 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 467.6 bits (1202), Expect = 6.9e-128
Identity = 240/259 (92.66%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RKGKR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDD WASVVDGDADQRLLT SENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of HG10004177 vs. NCBI nr
Match: KAG7016330.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.8 bits (1200), Expect = 1.2e-127
Identity = 240/259 (92.66%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT SENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of HG10004177 vs. NCBI nr
Match: XP_022939952.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_022939953.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata])

HSP 1 Score: 466.8 bits (1200), Expect = 1.2e-127
Identity = 240/259 (92.66%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT SENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of HG10004177 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.9e-73
Identity = 163/267 (61.05%), Postives = 194/267 (72.66%), Query Frame = 0


Query: 6   KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+    +SD E+D+TFYYRY S A+   PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRRGGVGGRHEE-DWGSD------VGEGFEDDNWASVVDGDADQRLLTGS 245
           RERP P  KRGRR    G  EE  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENVVE----KKKAKKASYFSDESEEDD 260
               E    K+K KK SYFSDES+++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of HG10004177 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41
Identity = 102/217 (47.00%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPK-RGRRGGVGGRHEEDWGSDVGEGFEDD------------NWASVVD 238
           PKN LG RE P+ K + ++  V    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGSENVVE---KKKAKKASYFSDESEEDD 260
                R  TG  +  +   + + KK++YFSDE E  D
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of HG10004177 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.0e-41
Identity = 104/218 (47.71%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSEN 238
           PKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 239 VVEKKKA-----------------KKASYFSDESEEDD 260
              K+ A                 KK++YFSDE E  D
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEELSD 218

[Close]

BLAST of HG10004177 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-41
Identity = 101/217 (46.54%), Postives = 136/217 (62.67%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGVGGRHEE-----DWGSDVGEGFEDDNWASVV-----DGDA 238
           PKN LG RE P+ K  ++       EE     +   D GE    D+ +  +       + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 DQRLLTGSENV------VEKKKAKKASYFSDESEEDD 260
           +Q+    S  V        + + KK++YFSDE E  D
Sbjct: 182 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of HG10004177 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-40
Identity = 100/217 (46.08%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPK-RGRRGGVGGRHEEDWGSDVGEGFEDD------------NWASVVD 238
           PKN LG RE P+ K + ++  +    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGSENVVE---KKKAKKASYFSDESEEDD 260
             +  R   G  +  +   + + KK++YFSDE E  D
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of HG10004177 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 2.6e-133
Identity = 249/259 (96.14%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of HG10004177 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 2.6e-133
Identity = 249/259 (96.14%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of HG10004177 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.3e-128
Identity = 240/259 (92.66%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RKGKR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDD WASVVDGDADQRLLT SENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of HG10004177 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.7e-128
Identity = 240/259 (92.66%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT SENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of HG10004177 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.4e-123
Identity = 234/259 (90.35%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MARKGKRT NPNSDS+DDETFYYRYPSAASSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 181 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGSENVV 240
           NQLGPRERPEPKRGRRGGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLTG ENV 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240

Query: 241 EKKKAKKASYFSDESEEDD 260
           E+KK KKASYFSDES+ED+
Sbjct: 241 ERKKGKKASYFSDESDEDE 254

[Close]

BLAST of HG10004177 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.7e-74
Identity = 163/267 (61.05%), Postives = 194/267 (72.66%), Query Frame = 0


Query: 6   KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+    +SD E+D+TFYYRY S A+   PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRRGGVGGRHEE-DWGSD------VGEGFEDDNWASVVDGDADQRLLTGS 245
           RERP P  KRGRR    G  EE  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENVVE----KKKAKKASYFSDESEEDD 260
               E    K+K KK SYFSDES+++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of HG10004177 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of HG10004177 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of HG10004177 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 64  PSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 123
           P  S + V N  +S +   L   FS FG+IA V ++KD   ++S+G AF+QF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 124 AAKQMHGKILNGRVLKAAIATDNGR 149
           A + M  ++ NGR++   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of HG10004177 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-07
Identity = 38/120 (31.67%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 26  PSAASSAPPPPSSSQSHFSSQSHSHSSTKS--GGGSGGLVPSKSTVYVSNFDYSLTNSDL 85
           P   ++ PPPP            S  S+ S  GGG G    S + VYV N  + + +  L
Sbjct: 161 PLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMAL 220

Query: 86  HTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIA 144
            +LFS  GK+    V+ DR + +S+G  FV + S  +   A K + G  L+GR ++ + A
Sbjct: 221 ESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280

The following BLAST results are available for this feature:

BLAST of HG10004177 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883985.1	9.9e-135	97.30	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]
XP_008456528.1	5.4e-133	96.14	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
XP_022993724.1	6.9e-128	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02...	[more]
KAG7016330.1	1.2e-127	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]
XP_022939952.1	1.2e-127	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_...	[more]

BLAST of HG10004177 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	3.9e-73	61.05	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q499V6	2.3e-41	47.00	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q5SP50	3.0e-41	47.71	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]
Q8TBF4	5.1e-41	46.54	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]
Q9CZ96	1.5e-40	46.08	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]

BLAST of HG10004177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	2.6e-133	96.14	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	2.6e-133	96.14	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	3.3e-128	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	5.7e-128	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	9.4e-123	90.35	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of HG10004177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	2.7e-74	61.05	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	2.5e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.5e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT4G20030.1	3.6e-10	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	1.3e-07	31.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 68..141 e-value: 1.2E-5 score: 34.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 68..141 e-value: 9.0E-25 score: 98.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..139 e-value: 1.6E-21 score: 75.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 67..145 score: 18.973166
None	No IPR available	GENE3D	4.10.60.10		coord: 154..196 e-value: 2.2E-5 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..259
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..142 e-value: 1.0E-27 score: 98.9
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..259
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 66..143 e-value: 1.02016E-40 score: 133.21
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004177.1	HG10004177.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding