HG10004165 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004165
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ras-related protein RABC2a-like
Location	Chr08: 14347961 .. 14351305 (+)
RNA-Seq Expression	HG10004165
Synteny	HG10004165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTTTTTCTCTCTCTTTTCTCTCTATCTATGCATGTTTTGATGGTTAATTCTTATAAACTCGTTTTTTATTGAAAACCCAGATGCTCCATTCTGTTCTTATTTTAATCCTCAAAGAAGTCTTTACAGTTCTGTTGGTTGGTTGAACATATGTTGATCAGATATTCTTGTTCTTTCCCATGTTTTTCTTGTTCTTTGTGGTTAATTTGCTGATCATAATTTTTTTTTATTGATTTCTGGTGTTTCGAGTGCTTATTGAATTGGGAGTTATATGCTAGAATGGTTTCTGGAACTTCAAGGGCTGAAGTGTTGTTGTAGTGTGAGACAGTAGCTTTGAACCAACTTTGTGGTTTAGTAAATTTGTTCCCATCTATATGATTAGTTTAACAAGTATTGAGATGACTAAATTTAACATAACCTATCTGGGCTTTTAGGTTCATTGGTGAATTAACATGATACCAGAGCAGGAGGTCTTGTGTTCGAAGTAATGTCTTTTTTACCCCGATTAATATTGATTTTTACTTGCTGGGCATTCTACGAATTCTCAAGCCCACACTTGAGAAAAGTGTTAAAATATTGATATAATTAAATTTACCGGTGATTTACAATTTAGGACTTTGGAGGGCCCTTATGTCCTTGGAAAGAGTCAATTATACTTGGTGATGCAAGTGCCCTTAAGATTCTCATTGTTGAGGAGTTTGTAGAGACAATTAAAAGGTTGCCTGAGAGTATTTCTTTTTTTTTTTTTTTTTTTTGAAATGTTACATATAACTCAAGAGGAAATTCGAACCTGTAACCTATAACTTGATGTTAGTATCACTTGAGTGACACTAAACTTGGTGAGAGCATAGTTTTTTTTTTCTTTCCCTCAAACAATTAATTTCTGAGAGAGAAGCTAGTGATTTTCATGATTTATGTATTGGACAGTAAAATGGGTATTACATATGTTTGTAATGCTGTTCATCACTTCCCGTTTTAATCACTATTGTACAAAGTTCCATATCCCATTTACATTTTAAAAATTGTTGCAACAAAAGGCAAGGATATTATGTAAGATGGATTGGATGATTGATGCTATTTTAACCTTATAATTCCTCCCTTCCCGTGTTTAAGTTTGCTGGGAGAAGCAGCCTCCATTAACTTCTCGTTTCTCTTGAGTAATCTCCATTTTGTGCATTGCTCCAGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGGTAACTGGATGATTGACTAGTCCTTTCACAGGATATTTTATGAAGTGTTCTTTCTCGCGTTGATTGTGAGAAAATAACAAATGTTCAGGTGTAATAAAAAAGTAACCATTGTGGATTAAATATCCTTTGTTGAGGATTATTTATTTATTTATTGTCATTTCATTTATGGCACTTGCTAGTTTGATGATTTCGTGCACGTTTTTATTCTGTGTTCTTGTACGCAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGGTATGATGAAAAGAAGCAAAAAATCTCTTTCGACAATTTTCCTGAAAAACAATCTTTGAAATTCTTTTATCTCCTGGAAACATCGATAAGCTTACCTTTCACGAGTTGCTGATTTTATTTTAATTTTCTTGATGGATTTTTAATTTTAATCAAGACTCTGTTAAATGATAACTGAAACAATGAGAACTGCGAATTTTTCTTGGTAACTGAAATTGAGTGCATATGGAGAATTTTTCTTGGTAACTGAAACGACGAGAACTGCGAATTGAGATATTAGAAACAGAGCTAATGAGACGAGACTTGTGAGCAAGGAAGTAATTAATCAGCATTCACTTCACCTTTATCTTTTATGTTCTCTTGTATAGACAGTCTATAAAAGTTGAAGTGTTCGTCCGTCTGTTCAATTCAAGCTGTATTGAAAACAAAAGCTCCATTCAAAACGTTTAGCTGTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTGTCATGCCAACATCATCCGACAGCTTTTTCTTCTTCATTTATGTTGTGTTCTTGTTCCCGTGTTTTCTTTCTTGCGTTAAGTATATCCGATACCTTTGTATTTTGGAAACTAGTTCTCATGGCATGTTTTTTCACATTTGAATGTATCAAATTTAGTTTGAGCTTCATGAGGCCCGAGACTAATCTATATTTTGCCAATAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGTAAGTTTGTACCACTATTCCCCGTCCATCCTTTGTCAACATTCTGTTGCCATGCTGTCTGATAATCTTCAAACCTTTAACCTTTCATTTCAACTTACATCACATTAGGAGAGAATTTTTAAATCATGTTCTCAAGTGTGGTGTCGTGTTCTCAAAATCTTATTATCGACAGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGGTAACTATCTTAACACTAAGAAGCTCGCATTTTACTCTAATCATCTTCCGAACTTCATTGCGTAAGTGCTATTGTGGGACTAGTGACTCCTAAGAATGGCCACTACACACAGTACACTTTTACACACAAGTATTAGTTTAGGAGCTAGAGTCAGGATTAGTTATAATCTTTCGGAACAAAAGCACGTAATCTTAATTTCCCTTAATCTCAAATAAAGCCAAAAAAAGTAACTCGTCTATGCATGGTTCCATACTTCGAAAGTATGATAGGTTGTTGGGGCATTTTCTCTTAACATAGAATCAAAAGTGGCTCTAGCAGTGGCTGAAAACTTTCATTTATTTTCCATGTGGGGTTGGACGTAAAGTTCGAAACCGATCCGAATGTATTTCATATCATGGCTTTTTGGGATGGTCTAAACTCTAAATTGGTTTAATTATAATCCAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

mRNA sequence

ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTTTTTCTCTCTCTTTTCTCTCTATCTATGCATGTTTTGATGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

Coding sequence (CDS)

ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTTTTTCTCTCTCTTTTCTCTCTATCTATGCATGTTTTGATGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

Protein sequence

MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACFDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCCH

Homology

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BLAST of HG10004165 vs. NCBI nr
Match: XP_038885704.1 (ras-related protein RABC2a-like [Benincasa hispida])

HSP 1 Score: 405.2 bits (1040), Expect = 3.7e-109
Identity = 207/227 (91.19%), Postives = 209/227 (92.07%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI            
Sbjct: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           MDVWAKEVE+YLTN ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN
Sbjct: 121 MDVWAKEVEMYLTNRECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCCH 228
           VDRCF ELSSK+LEVPSLLENGSVVVKQKILD TRARKEAND GCCH
Sbjct: 181 VDRCFRELSSKILEVPSLLENGSVVVKQKILDNTRARKEANDRGCCH 213

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BLAST of HG10004165 vs. NCBI nr
Match: XP_022952871.1 (ras-related protein RABC2a-like [Cucurbita moschata] >XP_022952881.1 ras-related protein RABC2a-like [Cucurbita moschata] >XP_023514704.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo] >XP_023514780.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo] >KAG6602284.1 Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.0 bits (1016), Expect = 2.2e-106
Identity = 203/226 (89.82%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSK R SSYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTI            
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           MDVWAKEVE+YLTNHECIKILVGNKVDRGSERAV+TEEGM VAKEH+SLFLECSARTREN
Sbjct: 121 MDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           VDRCF ELSSK+LEVPSLLENGSVVVKQKILDKTRARKEANDGGCC
Sbjct: 181 VDRCFKELSSKILEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 212

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BLAST of HG10004165 vs. NCBI nr
Match: XP_008456546.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 2.5e-105
Identity = 201/229 (87.77%), Postives = 207/229 (90.39%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI            
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           +++WAKEVELYLTN ECIKILVGNKVDRGSERAVTTEEGME+AKEHKSLFLECSARTREN
Sbjct: 121 INIWAKEVELYLTNRECIKILVGNKVDRGSERAVTTEEGMEIAKEHKSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 228
           VDRCF ELSSK+LEVPSLLENGS+VVKQKILDKTRA K  E ND GCCH
Sbjct: 181 VDRCFRELSSKILEVPSLLENGSIVVKQKILDKTRAHKEVEVNDRGCCH 215

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BLAST of HG10004165 vs. NCBI nr
Match: XP_004150373.1 (ras-related protein RABC2a [Cucumis sativus] >KGN62197.1 hypothetical protein Csa_006823 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 5.5e-105
Identity = 201/229 (87.77%), Postives = 208/229 (90.83%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI            
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGK+LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKKLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           ++VWAKEVELYLTN ECIKILVGNKVDRGS+RAVTTEEGMEVAK+HKSLFLECSARTREN
Sbjct: 121 INVWAKEVELYLTNRECIKILVGNKVDRGSDRAVTTEEGMEVAKKHKSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 228
           VDRCF ELSSKM+EVPSLLENGSVVVKQKILDKT+ARK  E ND GCCH
Sbjct: 181 VDRCFKELSSKMMEVPSLLENGSVVVKQKILDKTQARKEVEVNDRGCCH 215

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BLAST of HG10004165 vs. NCBI nr
Match: XP_022990456.1 (ras-related protein RABC2a-like [Cucurbita maxima])

HSP 1 Score: 390.6 bits (1002), Expect = 9.4e-105
Identity = 201/226 (88.94%), Postives = 205/226 (90.71%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSK R SSYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTI            
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           M VWAKEVE+YLTNHECIKILVGNKVDRGSERAV+TEEGM VAKEH+SLFLECSARTREN
Sbjct: 121 MGVWAKEVEMYLTNHECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           VDRCF ELSSK+LEVPSLLENGSVVVKQKILDKTRA KEANDGGCC
Sbjct: 181 VDRCFKELSSKILEVPSLLENGSVVVKQKILDKTRALKEANDGGCC 212

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BLAST of HG10004165 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.6e-77
Identity = 151/225 (67.11%), Postives = 176/225 (78.22%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+L+S+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK +TVGGKRLKLTIWDTAGQERF TLTSSYYRGA GIILVYDVTRRETFTNL+
Sbjct: 61  -GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLV 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           DVW KE+ELY TN EC+++LVGNKVDR SER V+ EEG+ +AKE   +FLECSARTR+NV
Sbjct: 121 DVWGKEIELYSTNQECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           ++CF EL+ K++EVPSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 EQCFEELALKIMEVPSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of HG10004165 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.3e-72
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK + V GKRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL 
Sbjct: 61  -GVDFKIKQMKVRGKRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLA 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE+ELY TNH+CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV
Sbjct: 121 DIWAKEIELYSTNHDCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           + CF EL+ K++EVPSLLE GS  VK+K          A+ G CC
Sbjct: 181 NGCFEELALKIMEVPSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of HG10004165 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 9.5e-68
Identity = 135/225 (60.00%), Postives = 166/225 (73.78%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+   +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTI             
Sbjct: 1   MGSSS-GQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFK+K +T+G K+LKL IWDTAGQERF TLTSSYYRGA GII+VYDVTRR+TFTNL 
Sbjct: 61  -GVDFKVKYLTIGEKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE++LY TN +CIK+LVGNKVD+ SERAV+ +EG++ A+E+  LFLECSA+TR NV
Sbjct: 121 DIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           ++CF EL  K+LE PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 EQCFEELVLKILETPSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of HG10004165 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.2e-47
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 12  SYDYSFKILLIGDSGVGKSSILLSYISN-FVHDLSPTIGFSLSFLSIYACFDGVDFKIKM 71
           S+DY+FK+LL+GDSGVGKS IL  + S  F    + TI              GVDFK+K 
Sbjct: 5   SHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTI--------------GVDFKVKY 64

Query: 72  VTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVEL 131
           +T  GKR KLTIWDTAGQERF TLTSSYYRGA GII VYDVTRR+TF +L   W +E ++
Sbjct: 65  LTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDI 124

Query: 132 YLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSS 191
           Y T    IK++V NKVD  ++R V++EEG + A+ H  LF+E SAR    V + F EL  
Sbjct: 125 YSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLL 184

Query: 192 KMLEVPSLLENGSV 205
           K+L+ P LLE  +V
Sbjct: 185 KILDTPLLLETTAV 184

[Close]

BLAST of HG10004165 vs. ExPASy Swiss-Prot
Match: Q5ZLG1 (Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-44
Identity = 100/212 (47.17%), Postives = 136/212 (64.15%), Query Frame = 0


Query: 16  SFKILLIGDSGVGKSSILLSYISN-FVHDLSPTIGFSLSFLSIYACFDGVDFKIKMVTVG 75
           + KIL+IG+SGVGKSS+LL +  + F  +L+ TI              GVDFK+K ++V 
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATI--------------GVDFKVKTISVD 67

Query: 76  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 135
           G + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L D W  E+E Y T 
Sbjct: 68  GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTR 127

Query: 136 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 195
           ++ +K+LVGNK+D+   R V   EG++ A++H  LF+E SA+T + V   F EL  K+++
Sbjct: 128 NDIVKMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 187

Query: 196 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
            P L E+ S     K+ +K    +E + GG C
Sbjct: 188 TPGLWESESQNKGVKLSNK----EEGHGGGAC 199

[Close]

BLAST of HG10004165 vs. ExPASy TrEMBL
Match: A0A6J1GLE8 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111455431 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.1e-106
Identity = 203/226 (89.82%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSK R SSYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTI            
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           MDVWAKEVE+YLTNHECIKILVGNKVDRGSERAV+TEEGM VAKEH+SLFLECSARTREN
Sbjct: 121 MDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           VDRCF ELSSK+LEVPSLLENGSVVVKQKILDKTRARKEANDGGCC
Sbjct: 181 VDRCFKELSSKILEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 212

[Close]

BLAST of HG10004165 vs. ExPASy TrEMBL
Match: A0A1S3C3K9 (ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103496466 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 201/229 (87.77%), Postives = 207/229 (90.39%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI            
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           +++WAKEVELYLTN ECIKILVGNKVDRGSERAVTTEEGME+AKEHKSLFLECSARTREN
Sbjct: 121 INIWAKEVELYLTNRECIKILVGNKVDRGSERAVTTEEGMEIAKEHKSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 228
           VDRCF ELSSK+LEVPSLLENGS+VVKQKILDKTRA K  E ND GCCH
Sbjct: 181 VDRCFRELSSKILEVPSLLENGSIVVKQKILDKTRAHKEVEVNDRGCCH 215

[Close]

BLAST of HG10004165 vs. ExPASy TrEMBL
Match: A0A0A0LN27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326500 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.7e-105
Identity = 201/229 (87.77%), Postives = 208/229 (90.83%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI            
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGK+LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKKLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           ++VWAKEVELYLTN ECIKILVGNKVDRGS+RAVTTEEGMEVAK+HKSLFLECSARTREN
Sbjct: 121 INVWAKEVELYLTNRECIKILVGNKVDRGSDRAVTTEEGMEVAKKHKSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 228
           VDRCF ELSSKM+EVPSLLENGSVVVKQKILDKT+ARK  E ND GCCH
Sbjct: 181 VDRCFKELSSKMMEVPSLLENGSVVVKQKILDKTQARKEVEVNDRGCCH 215

[Close]

BLAST of HG10004165 vs. ExPASy TrEMBL
Match: A0A6J1JMZ9 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111487310 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.5e-105
Identity = 201/226 (88.94%), Postives = 205/226 (90.71%), Query Frame = 0


Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYAC 60
           MMGSSSK R SSYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTI            
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTI------------ 60

Query: 61  FDGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120
             GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL
Sbjct: 61  --GVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL 120

Query: 121 MDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTREN 180
           M VWAKEVE+YLTNHECIKILVGNKVDRGSERAV+TEEGM VAKEH+SLFLECSARTREN
Sbjct: 121 MGVWAKEVEMYLTNHECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTREN 180

Query: 181 VDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           VDRCF ELSSK+LEVPSLLENGSVVVKQKILDKTRA KEANDGGCC
Sbjct: 181 VDRCFKELSSKILEVPSLLENGSVVVKQKILDKTRALKEANDGGCC 212

[Close]

BLAST of HG10004165 vs. ExPASy TrEMBL
Match: A0A5D3BLP5 (Ras-related protein RABC2a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00050 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.8e-104
Identity = 205/261 (78.54%), Postives = 211/261 (80.84%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFL------ 61
           MGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIG  L  L      
Sbjct: 1   MGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGEPLCVLRRSQLY 60

Query: 62  ---------------------------SIYACFDGVDFKIKMVTVGGKRLKLTIWDTAGQ 121
                                      SI     GVDFKIKMVTVGGKRLKLTIWDTAGQ
Sbjct: 61  LVMQVQGALKFAGEKQPSLTSRCSRVISISCIASGVDFKIKMVTVGGKRLKLTIWDTAGQ 120

Query: 122 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVGNKVDR 181
           ERFGTLTSSYYRGAHGIILVYDVTRRETFTNL+++WAKEVELYLTN ECIKILVGNKVDR
Sbjct: 121 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINIWAKEVELYLTNRECIKILVGNKVDR 180

Query: 182 GSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGSVVVKQ 228
           GSERAVTTEEGME+AKEHKSLFLECSARTRENVDRCF ELSSK+LEVPSLLENGS+VVKQ
Sbjct: 181 GSERAVTTEEGMEIAKEHKSLFLECSARTRENVDRCFRELSSKILEVPSLLENGSIVVKQ 240

[Close]

BLAST of HG10004165 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 288.5 bits (737), Expect = 4.7e-78
Identity = 151/225 (67.11%), Postives = 176/225 (78.22%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+L+S+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK +TVGGKRLKLTIWDTAGQERF TLTSSYYRGA GIILVYDVTRRETFTNL+
Sbjct: 61  -GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLV 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           DVW KE+ELY TN EC+++LVGNKVDR SER V+ EEG+ +AKE   +FLECSARTR+NV
Sbjct: 121 DVWGKEIELYSTNQECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           ++CF EL+ K++EVPSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 EQCFEELALKIMEVPSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of HG10004165 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 271.6 bits (693), Expect = 5.9e-73
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK + V GKRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL 
Sbjct: 61  -GVDFKIKQMKVRGKRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLA 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE+ELY TNH+CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV
Sbjct: 121 DIWAKEIELYSTNHDCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           + CF EL+ K++EVPSLLE GS  VK+K          A+ G CC
Sbjct: 181 NGCFEELALKIMEVPSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of HG10004165 vs. TAIR 10
Match: AT3G09910.2 (RAB GTPase homolog C2B )

HSP 1 Score: 271.6 bits (693), Expect = 5.9e-73
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK + V GKRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL 
Sbjct: 61  -GVDFKIKQMKVRGKRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLA 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE+ELY TNH+CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV
Sbjct: 121 DIWAKEIELYSTNHDCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           + CF EL+ K++EVPSLLE GS  VK+K          A+ G CC
Sbjct: 181 NGCFEELALKIMEVPSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of HG10004165 vs. TAIR 10
Match: AT3G09910.3 (RAB GTPase homolog C2B )

HSP 1 Score: 271.6 bits (693), Expect = 5.9e-73
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+ S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTI             
Sbjct: 1   MGSSS-GQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFKIK + V GKRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL 
Sbjct: 61  -GVDFKIKQMKVRGKRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLA 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE+ELY TNH+CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV
Sbjct: 121 DIWAKEIELYSTNHDCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           + CF EL+ K++EVPSLLE GS  VK+K          A+ G CC
Sbjct: 181 NGCFEELALKIMEVPSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of HG10004165 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 258.1 bits (658), Expect = 6.8e-69
Identity = 135/225 (60.00%), Postives = 166/225 (73.78%), Query Frame = 0


Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGFSLSFLSIYACF 61
           MGSSS G+   +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTI             
Sbjct: 1   MGSSS-GQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTI------------- 60

Query: 62  DGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLM 121
            GVDFK+K +T+G K+LKL IWDTAGQERF TLTSSYYRGA GII+VYDVTRR+TFTNL 
Sbjct: 61  -GVDFKVKYLTIGEKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS 120

Query: 122 DVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENV 181
           D+WAKE++LY TN +CIK+LVGNKVD+ SERAV+ +EG++ A+E+  LFLECSA+TR NV
Sbjct: 121 DIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNV 180

Query: 182 DRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 227
           ++CF EL  K+LE PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 EQCFEELVLKILETPSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

The following BLAST results are available for this feature:

BLAST of HG10004165 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885704.1	3.7e-109	91.19	ras-related protein RABC2a-like [Benincasa hispida]	[more]
XP_022952871.1	2.2e-106	89.82	ras-related protein RABC2a-like [Cucurbita moschata] >XP_022952881.1 ras-related...	[more]
XP_008456546.1	2.5e-105	87.77	PREDICTED: ras-related protein RABC2a-like [Cucumis melo]	[more]
XP_004150373.1	5.5e-105	87.77	ras-related protein RABC2a [Cucumis sativus] >KGN62197.1 hypothetical protein Cs...	[more]
XP_022990456.1	9.4e-105	88.94	ras-related protein RABC2a-like [Cucurbita maxima]	[more]

BLAST of HG10004165 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	6.6e-77	67.11	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	8.3e-72	65.78	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
O23657	9.5e-68	60.00	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
P36862	4.2e-47	52.58	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q5ZLG1	2.5e-44	47.17	Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1	[more]

BLAST of HG10004165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLE8	1.1e-106	89.82	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111455431 PE...	[more]
A0A1S3C3K9	1.2e-105	87.77	ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103496466 PE=4 SV=...	[more]
A0A0A0LN27	2.7e-105	87.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326500 PE=4 SV=1	[more]
A0A6J1JMZ9	4.5e-105	88.94	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111487310 PE=4...	[more]
A0A5D3BLP5	3.8e-104	78.54	Ras-related protein RABC2a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of HG10004165 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03530.1	4.7e-78	67.11	RAB GTPase homolog C2A	[more]
AT3G09910.1	5.9e-73	65.78	RAB GTPase homolog C2B	[more]
AT3G09910.2	5.9e-73	65.78	RAB GTPase homolog C2B	[more]
AT3G09910.3	5.9e-73	65.78	RAB GTPase homolog C2B	[more]
AT1G43890.1	6.8e-69	60.00	RAB GTPASE HOMOLOG B18	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 39..55 score: 25.94 coord: 170..192 score: 34.37 coord: 71..93 score: 50.93 coord: 135..148 score: 42.19 coord: 17..38 score: 47.48
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 22..225 e-value: 0.0064 score: -6.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 17..195 e-value: 5.2E-80 score: 281.8
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 14..195 e-value: 7.9E-21 score: 85.2
None	No IPR available	PANTHER	PTHR24073:SF643	SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	coord: 3..227
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 3..227
None	No IPR available	PROSITE	PS51419	RAB	coord: 12..226 score: 29.714258
None	No IPR available	PROSITE	PS51420	RHO	coord: 10..197 score: 9.91164
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 19..195 e-value: 1.6E-11 score: 27.9
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 18..193 e-value: 1.1E-48 score: 164.9
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 6..227 score: 14.953575
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..187 e-value: 4.6E-23 score: 79.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..223 e-value: 5.4E-59 score: 200.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004165.1	HG10004165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding