HG10004159 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004159
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Chr08: 14307595 .. 14307966 (+)
RNA-Seq Expression	HG10004159
Synteny	HG10004159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAGGTTCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGATCACGACTCCGACCTCGACCGCCGCGGCTGCCGGACACCAACCTCCGCCGAGCACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCAAAGAAGCCTAAACGTCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAGTTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTTGAAGCTTCTTCCACAGCGCCGCCCAAGAGGACCTGCTGCCGGTCAACCTGA

mRNA sequence

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAGGTTCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGATCACGACTCCGACCTCGACCGCCGCGGCTGCCGGACACCAACCTCCGCCGAGCACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCAAAGAAGCCTAAACGTCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAGTTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTTGAAGCTTCTTCCACAGCGCCGCCCAAGAGGACCTGCTGCCGGTCAACCTGA

Coding sequence (CDS)

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAGGTTCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGATCACGACTCCGACCTCGACCGCCGCGGCTGCCGGACACCAACCTCCGCCGAGCACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCAAAGAAGCCTAAACGTCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAGTTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTTGAAGCTTCTTCCACAGCGCCGCCCAAGAGGACCTGCTGCCGGTCAACCTGA

Protein sequence

MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCCRST

Homology

[Close]

BLAST of HG10004159 vs. NCBI nr
Match: XP_038884240.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASD DSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDRDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120

Query: 121 RST 124
           RST
Sbjct: 121 RST 123

[Close]

BLAST of HG10004159 vs. NCBI nr
Match: XP_008456553.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >KAA0057132.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa] >TYJ97113.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S SDHDSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE+SSTAPPKR CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNCC 120

Query: 121 R 122
           R
Sbjct: 121 R 120

[Close]

BLAST of HG10004159 vs. NCBI nr
Match: XP_011649858.1 (cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus] >KGN63026.1 hypothetical protein Csa_022022 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 3.3e-56
Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S SDHDSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE+S TAPPKR+CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSPTAPPKRSCC 120

Query: 121 R 122
           R
Sbjct: 121 R 120

[Close]

BLAST of HG10004159 vs. NCBI nr
Match: XP_023521119.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHD-SDLDRRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NIPSS SDHD +DLD RGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEASSTAPPKR+C
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPPKRSC 120

Query: 121 CRS 123
           CRS
Sbjct: 121 CRS 123

[Close]

BLAST of HG10004159 vs. NCBI nr
Match: XP_022990487.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 224.6 bits (571), Expect = 4.8e-55
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHD-SDLDRRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NIPSS SDHD +DLD RGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEASS APPKR+C
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSAAPPKRSC 120

Query: 121 CRS 123
           CRS
Sbjct: 121 CRS 123

[Close]

BLAST of HG10004159 vs. ExPASy Swiss-Prot
Match: Q9LPP4 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 GN=SMR1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPKIL 62
           MDLE  ++L K   P  ++   K S      +   + D D D   C TPTS EHKIP ++
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTS-----KTKKDEGDDDEDDLRCSTPTSQEHKIPAVV 60

Query: 63  -SCPGAPKKPKRPPV-----------PCKRKL---TMELKFFEIVNQEEVDNFFRSAYDL 119
            S P  P+KP+ PP             CKRKL   T E+    I+N+EE+D FF S Y+ 
Sbjct: 61  DSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFFSSVYN- 120

[Close]

BLAST of HG10004159 vs. ExPASy Swiss-Prot
Match: Q9LZ78 (Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN=SIM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPKIL 62
           MDL+  ++LP +  P  ++               ++ + D D  GC TPTS++HKIP   
Sbjct: 1   MDLDLIQDLPILNFPPAIK-------------IRANTNRDDDGGGCTTPTSSDHKIPPTT 60

Query: 63  SC--PGAPKKPKRPPVP-------CKRKLTMELKFFE-IVNQEEVDNFFRSAYDLEASST 113
           +   P  P+KP+ P  P       CKRKL   L  +E IVN++E++ FF S Y+   +S+
Sbjct: 61  ATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQTMASS 107

[Close]

BLAST of HG10004159 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 19 QVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIP--KILSCPGAPKKPK-RPP 78
          ++R P +P L  +IP S  +  +  +  GC+TPTS++HKIP  K   CP AP+KPK    
Sbjct: 17 KIRLPTRPEL--DIPDSDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRS 76

Query: 79 VPCKRKLTMELKFFEIVNQEEVD 99
             KRKLT       +VN+  +D
Sbjct: 77 SGTKRKLTP----VNVVNRIPID 93

[Close]

BLAST of HG10004159 vs. ExPASy Swiss-Prot
Match: Q9SGE2 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 GN=SMR2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-04
Identity = 23/55 (41.82%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 50  TPTSAEHKIPKILSCPGAP-KKPKRPPVPCKRKLTMELKFFEI--VNQEEVDNFF 102
           TPTS++HKIP++ +CP  P K+P+   +  K +L+ +L+FFE   V  +EV+  F
Sbjct: 41  TPTSSDHKIPEVETCPPPPRKRPREISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]

BLAST of HG10004159 vs. ExPASy TrEMBL
Match: A0A5A7UMQ0 (Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00200 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.6e-57
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S SDHDSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE+SSTAPPKR CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNCC 120

Query: 121 R 122
           R
Sbjct: 121 R 120

[Close]

BLAST of HG10004159 vs. ExPASy TrEMBL
Match: A0A1S3C3L4 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103496472 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.6e-57
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S SDHDSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE+SSTAPPKR CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNCC 120

Query: 121 R 122
           R
Sbjct: 121 R 120

[Close]

BLAST of HG10004159 vs. ExPASy TrEMBL
Match: A0A0A0LSQ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384460 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.6e-56
Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S SDHDSDLDRR CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120
           ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE+S TAPPKR+CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSPTAPPKRSCC 120

Query: 121 R 122
           R
Sbjct: 121 R 120

[Close]

BLAST of HG10004159 vs. ExPASy TrEMBL
Match: A0A6J1JIW3 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 GN=LOC111487335 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHD-SDLDRRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NIPSS SDHD +DLD RGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEASS APPKR+C
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSAAPPKRSC 120

Query: 121 CRS 123
           CRS
Sbjct: 121 CRS 123

[Close]

BLAST of HG10004159 vs. ExPASy TrEMBL
Match: A0A6J1E540 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=3662 GN=LOC111430821 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.2e-55
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHD-SDLDRRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NIPSS SDHD +DLD RGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEASSTAP KR+C
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120

Query: 121 CRS 123
           CRS
Sbjct: 121 CRS 123

[Close]

BLAST of HG10004159 vs. TAIR 10
Match: AT3G10525.1 (LOSS OF GIANT CELLS FROM ORGANS )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPKIL 62
           MDLE  ++L K   P  ++   K S      +   + D D D   C TPTS EHKIP ++
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTS-----KTKKDEGDDDEDDLRCSTPTSQEHKIPAVV 60

Query: 63  -SCPGAPKKPKRPPV-----------PCKRKL---TMELKFFEIVNQEEVDNFFRSAYDL 119
            S P  P+KP+ PP             CKRKL   T E+    I+N+EE+D FF S Y+ 
Sbjct: 61  DSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFFSSVYN- 120

[Close]

BLAST of HG10004159 vs. TAIR 10
Match: AT5G04470.1 (cyclin-dependent protein kinase inhibitors )

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-09
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIPKIL 62
           MDL+  ++LP +  P  ++               ++ + D D  GC TPTS++HKIP   
Sbjct: 1   MDLDLIQDLPILNFPPAIK-------------IRANTNRDDDGGGCTTPTSSDHKIPPTT 60

Query: 63  SC--PGAPKKPKRPPVP-------CKRKLTMELKFFE-IVNQEEVDNFFRSAYDLEASST 113
           +   P  P+KP+ P  P       CKRKL   L  +E IVN++E++ FF S Y+   +S+
Sbjct: 61  ATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQTMASS 107

[Close]

BLAST of HG10004159 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 19 QVRSPPKPSLSDNIPSSASDHDSDLDRRGCRTPTSAEHKIP--KILSCPGAPKKPK-RPP 78
          ++R P +P L  +IP S  +  +  +  GC+TPTS++HKIP  K   CP AP+KPK    
Sbjct: 17 KIRLPTRPEL--DIPDSDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRS 76

Query: 79 VPCKRKLTMELKFFEIVNQEEVD 99
             KRKLT       +VN+  +D
Sbjct: 77 SGTKRKLTP----VNVVNRIPID 93

[Close]

BLAST of HG10004159 vs. TAIR 10
Match: AT1G08180.1 (unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 23/55 (41.82%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 50  TPTSAEHKIPKILSCPGAP-KKPKRPPVPCKRKLTMELKFFEI--VNQEEVDNFF 102
           TPTS++HKIP++ +CP  P K+P+   +  K +L+ +L+FFE   V  +EV+  F
Sbjct: 41  TPTSSDHKIPEVETCPPPPRKRPREISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

The following BLAST results are available for this feature:

BLAST of HG10004159 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884240.1	3.4e-61	98.37	cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]	[more]
XP_008456553.1	1.1e-56	95.04	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >K...	[more]
XP_011649858.1	3.3e-56	94.21	cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus] >KGN63026.1 hyp...	[more]
XP_023521119.1	1.3e-55	91.06	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990487.1	4.8e-55	90.24	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]

BLAST of HG10004159 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPP4	1.4e-09	38.17	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LZ78	7.8e-08	33.33	Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LZ60	1.1e-04	39.76	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SGE2	9.0e-04	41.82	Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10004159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMQ0	5.6e-57	95.04	Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3C3L4	5.6e-57	95.04	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LSQ6	1.6e-56	94.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384460 PE=4 SV=1	[more]
A0A6J1JIW3	2.3e-55	90.24	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1E540	5.2e-55	90.24	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=366...	[more]

BLAST of HG10004159 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10525.1	1.0e-10	38.17	LOSS OF GIANT CELLS FROM ORGANS	[more]
AT5G04470.1	5.6e-09	33.33	cyclin-dependent protein kinase inhibitors	[more]
AT5G02420.1	7.5e-06	39.76	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G08180.1	6.4e-05	41.82	unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR33142:SF55	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR14	coord: 3..109
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 3..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004159.1	HG10004159.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus