HG10004144 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004144
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RRM domain-containing protein
Location	Chr08: 14163014 .. 14165170 (-)
RNA-Seq Expression	HG10004144
Synteny	HG10004144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAACAAGGCTATTTCTCTCTCATCCGACAAGAAGGAATCTGCCGATTTCTTGGTATGTATGCCCTTCACTCTGTTCATCAATCCCTTCGTCTCGGATCTTTTTAGTTGTTGTTTGGTTATTCTATCTCTTAATCTCTCTAGGTTTCTATGTAATTATTCCTCTCTCTTTCAGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAGAAGCCACTGGAAAGTACTGCTACTGTTCTCTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTGGTCGCATACCCTAAACCCACATCTTACATTCAATGAAATTTGAAGTTTTAAGTTTCTTGTTATCTTGTCTGCTACTCTTAACCCCTATAGTTTTCTACAGGTTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGAAATAGAAAGGTAAGACGAGCTGAATCTGCAAAGCTTTTTTCCAAAAAGAAATTATGTTCGCAGGAGAATGTTGCATTACAATAAATTGCTAGATTTTACTGATAACCAAAACTTCCACCCGTAATTATACATTCTCTCAGTATCTTCATCCATGGTTTGATTTCTGATTTTATTTTTATATGTAGACCGGGAAGTCGAGGCATTTTGGCTACGTTGAATTTGAATCCCCAGAGGTGCTATATCTAATTTAGGACTTTTGTACTTGTAATTTTCTGAATGTTAGTTATTCATCTTAATCACTTTCAGTTTACCCCAAATTTGGATCTCGTGAGCACAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGCTCCCGAGCATGTTCACCCCAAACTGTAAGTAATCAATTGCATTTCTCCTGCTAGATTTTTGCATCAACAGCCCATGTGGGGACATGGTTGTTGAATATTTCAAAGAATGTTGTTTCCTTTTTTCGTTTAAATGTTGCCTTTTTTTGTTTAAATGTTGCCATATTTGCAGATGGAAAGGTTTTAACTATCGCCACACGCCCTTAAATTGGTCTGAACTCGAGCGTAAGCAGCATAACAAGGTATTAAGCTTGGAAAATTATCTTTTAGACCATTAACATACATGTCTTTTTACTTGTTCTATGATATTTTTCAGGAAAGGACATTGGATGAGCACAAGAAGTTGGTGGACAGAATCTTGAAGCGGGATCAGGCGAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTATGAGTGTCCGGAAATTGTAAGAATTTTTTTATTTTTAAATTTCATTTTTATTTTTTTTCATAAAGATTAGCAAATTTTAGCTGTTTATTTAAAACATGAGAGTTGTTTGTTCATACCCTAATTTCTAGTTTTAATTTTTTTTTTAATTGAAACAACTACTTTCATTAAATCAAGCAAAAAACGAAAAATTAAAAATGCCTCCAACCCAAAAGTATAAGGTTAAGAGGATGATTATGAAAGACCTCAAGAATAGACATCCAAAGAGAGGGGCATTAAATCTAGCCAGGGACTAGCCCTGAGAGCTCTCAACAGTATCCTCACAGTTGGCCCACTACACTTTTTCATTATCTCCATACGGTTGGGGACTGTGATCCACCCCACTTTTTAATGATTTCAATGTGAAATAATTTTTTTTTTAAATAAAAAAACTATTTCATCATTGAATGAAATATCTAAAGATGTACAAAATGATGGCCCATTCATAGAGTATGTGAAATATTATCAATGGAAAGTCTTATATAGGCAATTTTAGGAGGATGGAATTTAGCTAATCCTTTTTTATCATTTTGAGAATGCCCTTGAGTTGAAATGAACTGTAAACCTATATTACTTCGAGTGCTTGTAAATACCTTTTAAGAACTTTAGCATCATATGATGCTGCCCCCCTCATGAGATCTGCTTGGAAGTGAAACTTTTCTTTATTTGAGATTCAGTGCCATACTTCTCCCTTCTAGTTGTCATCCTGTTTAATTTTTAGAGTGGAGAATTGCTGTCTAGTTTCCTTATGTGTTGATTCTGGATAATTTGCAGGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTCGATGAAGATTAG

mRNA sequence

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAACAAGGCTATTTCTCTCTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAGAAGCCACTGGAAAGTACTGCTACTGTTCTCTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACGTTGAATTTGAATCCCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGCTCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCACACGCCCTTAAATTGGTCTGAACTCGAGCGTAAGCAGCATAACAAGGAAAGGACATTGGATGAGCACAAGAAGTTGGTGGACAGAATCTTGAAGCGGGATCAGGCGAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTATGAGTGTCCGGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTCGATGAAGATTAG

Coding sequence (CDS)

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAACAAGGCTATTTCTCTCTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAGAAGCCACTGGAAAGTACTGCTACTGTTCTCTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACGTTGAATTTGAATCCCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGCTCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCACACGCCCTTAAATTGGTCTGAACTCGAGCGTAAGCAGCATAACAAGGAAAGGACATTGGATGAGCACAAGAAGTTGGTGGACAGAATCTTGAAGCGGGATCAGGCGAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTATGAGTGTCCGGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTCGATGAAGATTAG

Protein sequence

MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED

Homology

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BLAST of HG10004144 vs. NCBI nr
Match: XP_008456579.1 (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 414.5 bits (1064), Expect = 5.7e-112
Identity = 206/212 (97.17%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL KA  LSSDKKESADFLPLEGGPGRKLP QKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTL EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

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BLAST of HG10004144 vs. NCBI nr
Match: XP_038885284.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_038885285.1 MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida])

HSP 1 Score: 412.1 bits (1058), Expect = 2.8e-111
Identity = 203/212 (95.75%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KA SLS  K+ESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLSCHKQESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRI+KRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRIMKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPIPKKIKFDED 212

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BLAST of HG10004144 vs. NCBI nr
Match: XP_004140894.1 (uncharacterized RNA-binding protein C1827.05c [Cucumis sativus] >KAE8646629.1 hypothetical protein Csa_004933 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 3.4e-109
Identity = 200/212 (94.34%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKLNKA  LSSDKKESADFLPLEGGPGRKL  QKPLESTATVLYIGRIPH
Sbjct: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKS+HFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL+EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 212

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BLAST of HG10004144 vs. NCBI nr
Match: XP_022993750.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima])

HSP 1 Score: 404.8 bits (1039), Expect = 4.5e-109
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KA S  SDKKESADFLPLEGGPGRKLPAQKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARNRKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           +LKVHLI+PEHVHPKLWKGFNYRH PL+WSELERKQHNKERTLDEHKKLV+RILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

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BLAST of HG10004144 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 5.9e-109
Identity = 199/212 (93.87%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKA SL S+KKESADFLPLEGGPGRKLPAQKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRH PLNWSELERK+HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

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BLAST of HG10004144 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 62/155 (40.00%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 38  RKLPAQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYV 97
           +K+   K L+    VLY+GR+PHGF+EK+M  +F QFG V RLR++RNRKTG S+H+ ++
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFESPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQH 157
           EFES +VA +VA++MHNYLLY  +L+  +I  + VH  ++KG +     +  + + R QH
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLDEHKKLVDRILKRDQARQKRIRAAGIDYE 193
            K  + ++  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

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BLAST of HG10004144 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 66/149 (44.30%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADS 111
           VLY+G +P G FE +++ +F QFGKV RLR++R++KTG S+ +G+VEFE  EVAKIVA++
Sbjct: 46  VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105

Query: 112 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVD 171
           M+NYL+ E I+K H+I PE VH KL+ G         +  + R  +NK  T D+ KK+  
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 165

Query: 172 RILKRDQARQKRIRAAGIDYECPEIVGSV 201
           ++L ++   +KR+ A GIDY+ P     +
Sbjct: 166 KLLSKESKLRKRLAAKGIDYDFPGFAAQI 192

[Close]

BLAST of HG10004144 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 6.9e-28
Identity = 72/176 (40.91%), Postives = 103/176 (58.52%), Query Frame = 0


Query: 19  LSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVK 78
           LS D K   DF        RK   +K    T  V+YIG IP    E +++ +F QFG V 
Sbjct: 12  LSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVT 71

Query: 79  RLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWK 138
           RLR++R++KTG S+ + YVE+E  EVAKIVAD+M+NYL  E +LK   + PE VHP+L+ 
Sbjct: 72  RLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFI 131

Query: 139 GFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQARQKRIRAAGIDYECP 195
           G N R        + R  +N +R  +E KK+  R++ ++   +KR+   GIDY+ P
Sbjct: 132 GCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEKGIDYDFP 182

[Close]

BLAST of HG10004144 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-27
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 0


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADS 111
           V+YIG IP   +E ++  +F QFG V RLR++R++KTG S+ + YVEFE  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVD 171
           M+NYL  E +LK   + PE VHP+L+ G   +        + R  +NK R+  E KK+  
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           R+L ++   +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

[Close]

BLAST of HG10004144 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.9e-26
Identity = 61/161 (37.89%), Postives = 100/161 (62.11%), Query Frame = 0


Query: 38  RKLPAQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYV 97
           R    Q+  + T  V+Y+G +P   +E ++  +F QFG V R R++R++KTG S+ +G+V
Sbjct: 32  RATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFV 91

Query: 98  EFESPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELER-KQ 157
           EFES +VAKI A++M+NYL  E +LK H I PE VH +L++ +   H P         K+
Sbjct: 92  EFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREW---HMPFKRPSYPAVKR 151

Query: 158 HNKERTLDEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 198
           +N+ R+L +  ++ +R  K+++  +KR+   GIDY  P +V
Sbjct: 152 YNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189

[Close]

BLAST of HG10004144 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.7e-112
Identity = 206/212 (97.17%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL KA  LSSDKKESADFLPLEGGPGRKLP QKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTL EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of HG10004144 vs. ExPASy TrEMBL
Match: A0A0A0KCE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 200/212 (94.34%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKLNKA  LSSDKKESADFLPLEGGPGRKL  QKPLESTATVLYIGRIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKS+HFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL+EHKKLVDRILKRDQAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]

BLAST of HG10004144 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.2e-109
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KA S  SDKKESADFLPLEGGPGRKLPAQKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARNRKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           +LKVHLI+PEHVHPKLWKGFNYRH PL+WSELERKQHNKERTLDEHKKLV+RILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

[Close]

BLAST of HG10004144 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.8e-109
Identity = 199/212 (93.87%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKA SL S+KKESADFLPLEGGPGRKLPAQKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRH PLNWSELERK+HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of HG10004144 vs. ExPASy TrEMBL
Match: A0A6J1FJK1 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111444637 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKAISLSSDKKESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60
           MGAKAKKAMKKKL+K     SDKKESADFLPLEGGPGRKLPAQKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKVTYSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARNRKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRILKRDQAR 180
           +LKVHLI+PEHVHPKLWKGF+Y H PL+WSELERKQHNKERTLDEHKKLV RILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFSYHHKPLDWSELERKQHNKERTLDEHKKLVARILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

[Close]

BLAST of HG10004144 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.6 bits (693), Expect = 5.5e-73
Identity = 132/221 (59.73%), Postives = 173/221 (78.28%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKA--------ISLSSDKKESADFLPLEGGPGRKLP-AQKPLESTAT 60
           MGAKAKKA+KK + K         + L  + K SADFLPLEGGP RK P    PL++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVAKIVADS 120
           VLYIGRIPHGF+E E+E FF QFG VKR+R+ARN+KTGKS+HFG+++FE PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVD 180
           M++YLL EH+LKVH+I PE+V P LW+GF     P++  ++ER+Q NKERTL+EH+K++ 
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRDQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +I+K+DQ R+KRI AAGI+YECPE+VG+ QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

[Close]

BLAST of HG10004144 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-07
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 41  PAQKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVE 100
           P ++ +ES + +  L+IG I     E+ ++ +FG++G +    I R+R TG++R FG++ 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FESPEVAKIVADSMH-----------------NYLLYEHILKVHLIAPEH 132
           F  P VA+ V    H                   +L  H   +HLI+P H
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

[Close]

BLAST of HG10004144 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-07
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I ++R TG++R FG+V F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

[Close]

BLAST of HG10004144 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-07
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I ++R TG++R FG+V F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

[Close]

BLAST of HG10004144 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 31/108 (28.70%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 43  QKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYVEFE 102
           ++ +ES + +  L+IG I     E+ ++ +FG++G +    I R+R TG++R FG++ F 
Sbjct: 2   EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 61

Query: 103 SPEVAKIVADSMH-----------------NYLLYEHILKVHLIAPEH 132
            P VA+ V    H                   +L  H   +HLI+P H
Sbjct: 62  DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 109

The following BLAST results are available for this feature:

BLAST of HG10004144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456579.1	5.7e-112	97.17	PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo]	[more]
XP_038885284.1	2.8e-111	95.75	MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_03...	[more]
XP_004140894.1	3.4e-109	94.34	uncharacterized RNA-binding protein C1827.05c [Cucumis sativus] >KAE8646629.1 hy...	[more]
XP_022993750.1	4.5e-109	93.40	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima]	[more]
XP_022922397.1	5.9e-109	93.87	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata]	[more]

BLAST of HG10004144 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74978	1.6e-29	40.00	Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra...	[more]
Q8JIY8	2.8e-29	44.30	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=...	[more]
Q7SYS2	6.9e-28	40.91	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=...	[more]
Q6GL69	2.6e-27	44.06	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis...	[more]
Q3SZM1	2.9e-26	37.89	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=N...	[more]

BLAST of HG10004144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C4U7	2.7e-112	97.17	uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0KCE3	1.7e-109	94.34	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV...	[more]
A0A6J1JZE0	2.2e-109	93.40	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1E350	2.8e-109	93.87	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1FJK1	1.3e-106	91.51	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of HG10004144 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04600.1	5.5e-73	59.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	3.1e-07	29.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.1	5.3e-07	37.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	5.3e-07	37.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	1.5e-06	28.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR46754	MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN	coord: 1..212
None	No IPR available	PANTHER	PTHR46754:SF9	SUBFAMILY NOT NAMED	coord: 1..212
None	No IPR available	CDD	cd12307	RRM_NIFK_like	coord: 52..125 e-value: 4.55914E-43 score: 137.321
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..125 e-value: 7.5E-20 score: 81.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..120 e-value: 9.2E-14 score: 51.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 51..129 score: 14.948091
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..134 e-value: 1.4E-21 score: 79.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 34..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004144.1	HG10004144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding