HG10004133 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004133
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ferredoxin
Location	Chr08: 13987265 .. 13987714 (-)
RNA-Seq Expression	HG10004133
Synteny	HG10004133

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACTATCAAACTCCCAACATCTTGCCTGATCAAAACTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTATGTTCTGTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTCCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATTGGACCAAACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCGGCTGAGGATGCTGGATTGGATCTACCTTACTCCTGCAGGGCTGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCTGGGACAGTGGACCAGTCGGATGGATCGTTCTTGGACGATAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTAA

mRNA sequence

ATGTCGACTATCAAACTCCCAACATCTTGCCTGATCAAAACTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTATGTTCTGTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTCCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATTGGACCAAACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCGGCTGAGGATGCTGGATTGGATCTACCTTACTCCTGCAGGGCTGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCTGGGACAGTGGACCAGTCGGATGGATCGTTCTTGGACGATAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTAA

Coding sequence (CDS)

ATGTCGACTATCAAACTCCCAACATCTTGCCTGATCAAAACTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTATGTTCTGTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTCCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATTGGACCAAACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCGGCTGAGGATGCTGGATTGGATCTACCTTACTCCTGCAGGGCTGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCTGGGACAGTGGACCAGTCGGATGGATCGTTCTTGGACGATAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTAA

Protein sequence

MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY

Homology

[Close]

BLAST of HG10004133 vs. NCBI nr
Match: XP_038884210.1 (ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884212.1 ferredoxin, root R-B2-like [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 2.4e-72
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLI 60
           M TIKLPTSCLIKT TPRRS ALVQRPSSLCSVRSVSRAFGLKSS F+VSAMA+YKVKLI
Sbjct: 1   MLTIKLPTSCLIKTTTPRRSNALVQRPSSLCSVRSVSRAFGLKSSSFRVSAMATYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120
           GPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           QMEKGYVLTCVAYPQSDCVI THKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIQTHKEGDLY 149

[Close]

BLAST of HG10004133 vs. NCBI nr
Match: XP_023551682.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 9.0e-72
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLI 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL SVRSVSRAFGLKSS FKV+AMA+YKVKLI
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMAAYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120
           GPNGEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEEAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDN 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of HG10004133 vs. NCBI nr
Match: KAG6578819.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMA-SYKVKL 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL SVRSVSRAFGLKSS FKV+AMA +YKVKL
Sbjct: 187 MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVKL 246

Query: 61  IGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 247 IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 306

Query: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 307 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 336

[Close]

BLAST of HG10004133 vs. NCBI nr
Match: XP_022938723.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022938724.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMA-SYKVKL 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL SVRSVSRAFGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of HG10004133 vs. NCBI nr
Match: KAG7016344.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMA-SYKVKL 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL SVRSVSRAFGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of HG10004133 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.8e-49
Identity = 101/152 (66.45%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 1   MSTIKLPTSCLI--KTATPRRSCALVQRPSSLCSVRSVSRAFGLKSS-PFKVSAMASYKV 60
           MST    TSC +     T + S   V+ PSSL     V++   LK+S    VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  KLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFL 120
           KL+GP GEE+EFDAPDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 121 DDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of HG10004133 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 91/155 (58.71%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 1   MSTIKLP----TSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMAS-- 60
           M+T+++     T  ++++ T  +         S+ S + VSR+FGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDG 120
           YKVKL+GP+G+E+EF+  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of HG10004133 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 53  ASYKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQS 112
           A YKVKLIGP+G+ENEFD PDD YILD+AE+AG+DLPYSCRAGACSTCAG++  G VDQS
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of HG10004133 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-40
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 53  ASYKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQS 112
           A YKVKLIGP GEENEF+  DD +ILD+AE+AG+DLPYSCRAGACSTCAGQ+V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of HG10004133 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-38
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 34  RSVSRAFGLK-SSPFKVSAMA-SYKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYS 93
           R  +RA G + SS F  SA A  +KVKL+GP+G E+EF+APDD YIL++AE AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 94  CRAGACSTCAGQVVSGTVDQSDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           CRAG+CSTCAG++ +G VDQS+GSFLDD QM +GY+LTC++YP++DCVIHTHKE DLY
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

[Close]

BLAST of HG10004133 vs. ExPASy TrEMBL
Match: A0A6J1FEX9 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMA-SYKVKL 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL SVRSVSRAFGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of HG10004133 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.3e-71
Identity = 135/149 (90.60%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLI 60
           MST++LPTSCLI+ ATPR+SCALVQRPSSL S RSVSRAFGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120
           GPNGEENEF+APDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of HG10004133 vs. ExPASy TrEMBL
Match: A0A6J1K096 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMA-SYKVKL 60
           MS I LPTSCLIK+ATPRRSCALVQRPSSL S RSVSRAFGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of HG10004133 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 134/149 (89.93%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLI 60
           MST++LPTSCLI+ ATPR+SCALVQRPSSL S R+VSRAFGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120
           GPNGEENEF+APDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of HG10004133 vs. ExPASy TrEMBL
Match: A0A0A0KNA3 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.5e-69
Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MSTIKLPTSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKVKLI 60
           MST+ LPTS LIK  T RRS ALVQRPSSLCS RSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120
           GP+GEENEFDAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of HG10004133 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 91/155 (58.71%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 1   MSTIKLP----TSCLIKTATPRRSCALVQRPSSLCSVRSVSRAFGLKSSPFKVSAMAS-- 60
           M+T+++     T  ++++ T  +         S+ S + VSR+FGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDG 120
           YKVKL+GP+G+E+EF+  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of HG10004133 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 84/143 (58.74%), Postives = 106/143 (74.13%), Query Frame = 0


Query: 8   TSCLIKTATPRRSCALVQRPSSLCSV--RSVSRAFGLKSSPF---KVSAMASYKVKLIGP 67
           +S ++ T+  RR     Q P SL S+   +    FGLKSS     +V+AMA+YKVK I P
Sbjct: 7   SSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITP 66

Query: 68  NGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDKQM 127
            GE+ E +  +D Y+LD+AE+AGLDLPYSCRAG+CS+CAG+VVSG++DQSD SFLDD+QM
Sbjct: 67  EGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 126

Query: 128 EKGYVLTCVAYPQSDCVIHTHKE 146
            +GYVLTCVAYP SD VI THKE
Sbjct: 127 SEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of HG10004133 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.5e-36
Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 8   TSCLIKTATPRRSCALVQRPSSLCSVRSVS--RAFGLKSSPF---KVSAMASYKVKLIGP 67
           +S ++ T+  RRS A    P SL S+ S +    FGLKS      +V+AMA+YKVK I P
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 66

Query: 68  NGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDKQM 127
            G E E +  DD Y+LD+AE+AG+DLPYSCRAG+CS+CAG+VVSG+VDQSD SFLDD+Q+
Sbjct: 67  EG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 126

Query: 128 EKGYVLTCVAYPQSDCVIHTHKEGDL 149
            +G+VLTC AYP SD  I THKE D+
Sbjct: 127 GEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of HG10004133 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 40  FGLKSSP---FKVSAMASYKVKLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGA 99
           FGL SS     KV A  S KVKLI P GEE E +  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 100 CSTCAGQVVSGTVDQSDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDL 149
           C TC G++VSG VDQS GSFL+++Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of HG10004133 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0


Query: 2   STIKLPTSCLIKT-ATPRRSCAL---VQRPSSLCSVRSVSRAFGLKSSPFKVSAMASYKV 61
           STI LP   L  + + P R+  L     R + L + R ++RA               YKV
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIARA---------------YKV 70

Query: 62  KLIGPNGEENEFDAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFL 121
            ++  +G+  E +   D  IL  A D+GLD+PY C  G C TC  ++V+GTVDQS G  L
Sbjct: 71  -VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGML 130

Query: 122 DDKQMEKGYVLTCVAYPQSDCVIHTHKEGDL 149
            D  +E+GY L C +YP SDC I    E +L
Sbjct: 131 SDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of HG10004133 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884210.1	2.4e-72	94.63	ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root ...	[more]
XP_023551682.1	9.0e-72	93.29	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578819.1	7.6e-71	93.33	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022938723.1	7.6e-71	93.33	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022938724.1 ferredoxin, root...	[more]
KAG7016344.1	7.6e-71	93.33	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of HG10004133 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	3.8e-49	66.45	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	2.8e-44	58.71	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14936	1.1e-40	78.35	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14937	1.9e-40	77.32	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	1.8e-38	64.41	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]

BLAST of HG10004133 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEX9	3.7e-71	93.33	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1	[more]
A0A6J1E8R7	6.3e-71	90.60	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1K096	1.4e-70	92.67	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1	[more]
A0A6J1JQ79	2.4e-70	89.93	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]
A0A0A0KNA3	4.5e-69	91.28	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1	[more]

BLAST of HG10004133 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	2.0e-45	58.71	ferredoxin 3	[more]
AT1G10960.1	1.2e-37	58.74	ferredoxin 1	[more]
AT1G60950.1	6.5e-36	56.85	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.3e-33	59.82	ferredoxin 4	[more]
AT4G14890.1	1.5e-16	37.75	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..135 e-value: 3.2E-20 score: 71.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 55..146 score: 12.942035
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 60..141 e-value: 3.40584E-32 score: 107.866
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 53..149 e-value: 1.1E-50 score: 167.4
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 52..149 e-value: 1.9E-36 score: 125.8
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..149
None	No IPR available	PANTHER	PTHR43112:SF31	FERREDOXIN	coord: 1..149
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 39..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004133.1	HG10004133.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding