HG10004132 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004132
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S25
Location	Chr08: 13984418 .. 13986157 (+)
RNA-Seq Expression	HG10004132
Synteny	HG10004132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTCCCTTCCTTTTTTGTTGATTCGAATTATTTGTTCTTCCTTTTGATTTTGGTTTGGTTTTTGAAGCTTCTGATATACTGATTCTACTTGCTGTGGTGTTTTTTGTTGTTTTCGTTTTGAATCGCAGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAAACTTCTTAAAATCAAATACTGCTAGCGGTTTCATGATTAGTACGCCGATACTTGCTTAATCTCATCGTTCAAGATCATTAACTAAGATTTAATCGTTTTAGATTCCTCTGGTGATACTGCATTGCTAAGATGTGGTGTGCAATTAGTGTTTGTTTGAAGTTAGTATCTTCGTATTTCGACACTAGAATTTGGAATCATCTTCTGACATCGTGTAGCATATACTTTTTCACCATACAGAGTTCACATTACTACCCTTGGTGTTGGATTATTGGCTAATCAAAAAGTGACTTTCATATTCGATTAGAATGAAGAGACAATAAAAATCATTATGGATATTGAAAAATACAATGAGATGTTTGAAAATTGGTGAAGTTTGTTGATTAAGAGGAAATGTTTTCTTTTTGGTATTCGTTGTAATATGGACGTGCTTGTTATTTGATATGTTGGTTATCACTTGGTTTGCAGAAATGGAGTAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTAGTCACTCCTTCTATTCTTTCTGATAGATTGAGGGTATGTCTTTTCTTCCTTCTATCCATACATTCCTCAATTTGTTTTTTTTGTTCTTGTCCAGAATATATATATATATCAACATAAGTTTTGTAGTGTAATGATGATGATTCAACTGGTATTTACCAAGCAGGAGCAACCTTATCTAACTTATGTGGTTTGTGTTGCGTAGATAATTAATTGAAGGGTAATACTTGGGTGCATCTCAGGTAGGCAGCCATCTTGATGCATCCCACTCTATCACTCACATAAAAAATCATTAAAATATTTCAAAAAAAGAAAAACAAGAAGAATTTGCCACATGTCAAAGTATGATGGGATAATTTGGTGGGATGCACAAAGATAGGTGCTACTCGAGATGCACCTAAGTATTTTTCTTAATTAAAAACCCTTTCAAGTCTATTGATTGACCATCAAATTCATAGTTAAGGTCCCCATCTAGTAATCATTGGTTTTGGAAAATTAAGCCTAAAAATATCCCTTTTACTTCCAAGTTTCTTTATTTTGTTTTGAAAACTATAAAAACTTGAATTCTTAACTAAATTTTAGAGACAAAAACAAGTTTATAAAAGCAACTCTTTTACTTGGAAAAGATGATTATGGTAAGAAATTTAGAGGAAATTAGCATGATTTTTATTTACCAAAAACGAAAAAACCAGATGGTTTTGAATCGTGATTTATGCTGGCTCTTTTGGTTAAAATTCAAACTACATTTGTGTTGAACTCATTGATTCACTGTTAGTGCTACTGATAAAACCTTTATCTTTTTTTTTTTGCAATTTACTAATGTTTTCTTTTGGTCGTGTAATATTCAGATCAATGGATCACTAGCACGAAGAGCAATTAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCAGCTCACTCCAGTCAGCAGATCTACACCAGATCAACCAACACCTAA

mRNA sequence

ATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGTAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTAGTCACTCCTTCTATTCTTTCTGATAGATTGAGGATCAATGGATCACTAGCACGAAGAGCAATTAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCAGCTCACTCCAGTCAGCAGATCTACACCAGATCAACCAACACCTAA

Coding sequence (CDS)

ATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGTAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTAGTCACTCCTTCTATTCTTTCTGATAGATTGAGGATCAATGGATCACTAGCACGAAGAGCAATTAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCAGCTCACTCCAGTCAGCAGATCTACACCAGATCAACCAACACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT

Homology

[Close]

BLAST of HG10004132 vs. NCBI nr
Match: XP_008442240.1 (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-47
Identity = 104/108 (96.30%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. NCBI nr
Match: XP_008456601.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S ribosomal protein S25-2-like [Momordica charantia] >TYK11764.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTR+TNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. NCBI nr
Match: XP_004291591.1 (PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-46
Identity = 103/108 (95.37%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMISAH+SQQIYTR+TNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. NCBI nr
Match: XP_022142384.1 (40S ribosomal protein S25-2 [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 4.7e-46
Identity = 102/108 (94.44%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQG+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. NCBI nr
Match: XP_004140903.1 (40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein Csa_005769 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.7e-46
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTR+TNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.8e-47
Identity = 97/108 (89.81%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-46
Identity = 96/107 (89.72%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQIYTR+T+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of HG10004132 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.4e-46
Identity = 95/108 (87.96%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-45
Identity = 94/108 (87.04%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ +YDKLLSEAPK+KL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+SAH+SQQIYTR+TNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-44
Identity = 92/106 (86.79%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRST 107
           +TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S HSSQQI TR+T
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of HG10004132 vs. ExPASy TrEMBL
Match: A0A1S3B608 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-47
Identity = 104/108 (96.30%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy TrEMBL
Match: A0A5D3CKR9 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00850 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTR+TNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy TrEMBL
Match: A0A6J1BYI5 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTR+TNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy TrEMBL
Match: A0A1S3C4W3 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTR+TNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. ExPASy TrEMBL
Match: A0A2N9J628 (40S ribosomal protein S25 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59693 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDRLRINGSLARRAI+DLMARGSIRM+S HSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIRDLMARGSIRMVSTHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 188.0 bits (476), Expect = 4.1e-48
Identity = 97/108 (89.81%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-47
Identity = 96/107 (89.72%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQIYTR+T+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of HG10004132 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-47
Identity = 95/108 (87.96%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of HG10004132 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-46
Identity = 96/108 (88.89%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of HG10004132 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 178.3 bits (451), Expect = 3.2e-45
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTR+TNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of HG10004132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442240.1	9.5e-47	96.30	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
XP_008456601.1	2.1e-46	96.30	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S r...	[more]
XP_004291591.1	2.7e-46	95.37	PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]	[more]
XP_022142384.1	4.7e-46	94.44	40S ribosomal protein S25-2 [Momordica charantia]	[more]
XP_004140903.1	4.7e-46	94.44	40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein C...	[more]

BLAST of HG10004132 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	5.8e-47	89.81	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	4.9e-46	89.72	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9T029	6.4e-46	87.96	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
P46301	3.2e-45	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9SIW5	6.0e-44	86.79	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of HG10004132 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B608	4.6e-47	96.30	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1	[more]
A0A5D3CKR9	1.0e-46	96.30	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BYI5	1.0e-46	96.30	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV...	[more]
A0A1S3C4W3	1.0e-46	96.30	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1	[more]
A0A2N9J628	1.7e-46	94.44	40S ribosomal protein S25 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59693 PE=3 SV=...	[more]

BLAST of HG10004132 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	4.1e-48	89.81	Ribosomal protein S25 family protein	[more]
AT4G34555.1	3.5e-47	89.72	Ribosomal protein S25 family protein	[more]
AT4G39200.1	4.5e-47	87.96	Ribosomal protein S25 family protein	[more]
AT2G21580.2	2.9e-46	88.89	Ribosomal protein S25 family protein	[more]
AT4G39200.2	3.2e-45	87.04	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..104 e-value: 6.4E-40 score: 135.4
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..108
None	No IPR available	GENE3D	3.30.63.20		coord: 21..108 e-value: 7.6E-40 score: 136.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004132.1	HG10004132.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome