HG10004101 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004101
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 13705649 .. 13705942 (-)
RNA-Seq Expression	HG10004101
Synteny	HG10004101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACGTCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

mRNA sequence

ATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACGTCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

Coding sequence (CDS)

ATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACGTCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

Protein sequence

MKPLIYKSLLLPFLYTFLLMFSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQVDLLHLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR

Homology

[Close]

BLAST of HG10004101 vs. NCBI nr
Match: XP_011656590.1 (uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetical protein Csa_005020 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-29
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLP--LPSSSL 60
           MKPLI KSLL+P LYTFLL+ FS HLHTPTQAAR+LLP PGS VASTSLPLP  L SSS 
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  YQVDLL-HLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
           YQVDLL HLP   RKLGET+SST+TSLRRIPRSGPNPTQNR
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNR 141

[Close]

BLAST of HG10004101 vs. NCBI nr
Match: KAA0031696.1 (uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 76/100 (76.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQ 60
           MKPLI KSLL+P L+TFLL+ FS HLHTPTQAAR+L P PGS VA TSLPL L SS  YQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
           VD L  HLP   RKLGET+SST+TSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of HG10004101 vs. NCBI nr
Match: TYK04416.1 (uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 76/100 (76.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQ 60
           MKPLI KSLL+P L+TFLL+ FS HLHTPTQAAR+L P PGS VA TSLPL L SS  YQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
           VD L  HLP   RKLGET+SST+TSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of HG10004101 vs. NCBI nr
Match: KAG7016372.1 (hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MKPLIYKSLLLPFLYTFLLMFSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQV 60
          MKPLI KS L+P L +FLLM    L TPTQAAR+LLP+P   VASTS      SSSLYQV
Sbjct: 1  MKPLICKS-LVPILCSFLLM--SFLPTPTQAARLLLPVP--RVASTS------SSSLYQV 60

Query: 61 DLLH-LPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
          D+LH LP T RKL ET SST++SLRRIPRSGPNPTQNR
Sbjct: 61 DVLHLLPLTARKLHETASSTSSSLRRIPRSGPNPTQNR 87

[Close]

BLAST of HG10004101 vs. NCBI nr
Match: KAG7032911.1 (hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 58/97 (59.79%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1  MKPLIYKSLLLPFLYTFLLMFSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQV 60
          MKPLI KS LLP LYTFLLMF LHLHT   AAR LLP                 SS  +V
Sbjct: 1  MKPLICKS-LLPILYTFLLMFPLHLHTAALAARTLLP-----------------SSSSRV 60

Query: 61 DLLHLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
            LHLP T RKL ET SST++SLR+IP+SGPNPTQN+
Sbjct: 61 GHLHLPLTVRKLPETASSTSSSLRQIPKSGPNPTQNK 79

[Close]

BLAST of HG10004101 vs. ExPASy TrEMBL
Match: A0A5D3C1X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00120 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.2e-27
Identity = 76/100 (76.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQ 60
           MKPLI KSLL+P L+TFLL+ FS HLHTPTQAAR+L P PGS VA TSLPL L SS  YQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
           VD L  HLP   RKLGET+SST+TSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of HG10004101 vs. ExPASy TrEMBL
Match: A0A5A7SNV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004800 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.2e-27
Identity = 76/100 (76.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQ 60
           MKPLI KSLL+P L+TFLL+ FS HLHTPTQAAR+L P PGS VA TSLPL L SS  YQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNR 98
           VD L  HLP   RKLGET+SST+TSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

The following BLAST results are available for this feature:

BLAST of HG10004101 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656590.1	8.0e-29	81.19	uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetica...	[more]
KAA0031696.1	1.3e-26	76.00	uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa]	[more]
TYK04416.1	1.3e-26	76.00	uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa]	[more]
KAG7016372.1	2.7e-16	69.39	hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7032911.1	3.3e-14	59.79	hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10004101 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1X0	6.2e-27	76.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNV6	6.2e-27	76.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10004101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004101.1	HG10004101.1	mRNA