HG10004059 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004059
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Prolamin_like domain-containing protein
Location	Chr08: 13276801 .. 13277199 (+)
RNA-Seq Expression	HG10004059
Synteny	HG10004059

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGGAAATAACACGATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACAACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAATAAGAAGGAATTGGATTTAAATTGTTGTGTCTTCGTCAAAGTTATGGGAAAAAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTACTGGAAGACTTGGTGCTCTTCCACCCACACCATTTTAA

mRNA sequence

ATGGCAAAGGGAAATAACACGATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACAACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAATAAGAAGGAATTGGATTTAAATTGTTGTGTCTTCGTCAAAGTTATGGGAAAAAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTACTGGAAGACTTGGTGCTCTTCCACCCACACCATTTTAA

Coding sequence (CDS)

ATGGCAAAGGGAAATAACACGATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACAACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGGATGAAGAGTGCAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAATAAGAAGGAATTGGATTTAAATTGTTGTGTCTTCGTCAAAGTTATGGGAAAAAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTACTGGAAGACTTGGTGCTCTTCCACCCACACCATTTTAA

Protein sequence

MAKGNNTMGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNCTGRLGALPPTPF

Homology

[Close]

BLAST of HG10004059 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 102/125 (81.60%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 8   MGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 67
           M AIVILL AINL+ LVQ S V+ D+NSPIWDGWVDEDRG TLRPCLDRM+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 68  NYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNCTGRLGAL 127
           NYYFNI+KKELDLNCCVFVKVMGKKCA+AF  WY+F GLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 128 PPTPF 133
           PP PF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004059 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 8   MGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 67
           MGA+VILLLAINLA L QPS  ++D+NSPIWD WVDEDRGI LRPCLD MKSAKCQVELY
Sbjct: 1   MGAMVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELY 60

Query: 68  NYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNCTGRLGAL 127
           NYYFNI+KKELDLNCCVFVKVMGK+CARAFA W++F   E++E NPMKVY NC GRL AL
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDAL 120

Query: 128 PPTPF 133
           PP PF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004059 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 6.3e-53
Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MAKGNNTMGAIV-ILLLAINLATLVQPSR--VNNDFNSPIWDGWVDEDRGITLRPCLDRM 60
           MA G NT+G I+ ILLLA+NLA LV PS   V++D+NSPIW+GWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVY 120
           KSAKCQV+LYNYYFNI+KKELDL CCVFVK+MGK CA AFA WY+F GLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCTGRLGALPPTPF 133
            NC GRL ALPPTPF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004059 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 84/110 (76.36%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 6   NTMGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVE 65
           N M A++ILL  INLA LVQP  V+ D+NS IW+ W+DEDR  TLRPCLDRM+SAKCQVE
Sbjct: 32  NAMRAMLILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQVE 91

Query: 66  LYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMK 116
           LYNYYFNI+K+ELDLNCCVFVKVMGKKCA+AF  WY+F GLEIYEPNPMK
Sbjct: 92  LYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMK 141

[Close]

BLAST of HG10004059 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40
Identity = 78/130 (60.00%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MAKGNNTMGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSA 60
           MAK  +T+GA+V+LLLA+NL   V+ +  + D+NSPIWD W+DEDR   LRPCL+ MKSA
Sbjct: 1   MAKETSTLGAMVVLLLAVNLQGFVRVTSADVDYNSPIWDRWLDEDRAYYLRPCLNLMKSA 60

Query: 61  KCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNC 120
           KCQV+LYN YFN++K+ELDLNCCVFVKVMGK CA  FA W+ +   E+Y+PNPM +Y  C
Sbjct: 61  KCQVQLYNNYFNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKRC 120

Query: 121 TGRL-GALPP 130
             RL  ++PP
Sbjct: 121 VARLSSSIPP 130

[Close]

BLAST of HG10004059 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54
Identity = 102/125 (81.60%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 8   MGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 67
           M AIVILL AINL+ LVQ S V+ D+NSPIWDGWVDEDRG TLRPCLDRM+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 68  NYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNCTGRLGAL 127
           NYYFNI+KKELDLNCCVFVKVMGKKCA+AF  WY+F GLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 128 PPTPF 133
           PP PF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004059 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 101/135 (74.81%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MAKGNNTMGAIV-ILLLAINLATLVQPSR--VNNDFNSPIWDGWVDEDRGITLRPCLDRM 60
           MA G NT+G I+ ILLLA+NLA LV PS   V++D+NSPIW+GWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVY 120
           KSAKCQV+LYNYYFNI+KKELDL CCVFVK+MGK CA AFA WY+F GLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCTGRLGALPPTPF 133
            NC GRL ALPPTPF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004059 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.9e-53
Identity = 100/131 (76.34%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MAKGNNTMGAIVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSA 60
           MA   N M A+VILL AINLA LVQ S V+ D+NS IW+ W+DEDR  TLRPCLDRM+SA
Sbjct: 1   MANKTNAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 60

Query: 61  KCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNC 120
           KCQVELYNYYFNI+KKELDLNCCVFVKVMGKKCA+AF  WY+F GLEIYEPNPMKVY NC
Sbjct: 61  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 120

Query: 121 TGRLGALPPTP 132
             RL A PPTP
Sbjct: 121 ATRLSAPPPTP 131

[Close]

BLAST of HG10004059 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.7e-35
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 11  IVILLLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELYNYY 70
           +++ LL ++   LVQPS V+++  S IW  W+DEDR  TL PCL  M+S KCQVELYNYY
Sbjct: 12  VMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYY 71

Query: 71  FNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKVYTNCTGRLGALPPT 130
           FNI+KKELDL+CCV+V  MGKKCA AF  W+ F  LE  +PNPMKVY NC  RL    PT
Sbjct: 72  FNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPT 131

Query: 131 P 132
           P
Sbjct: 132 P 132

[Close]

BLAST of HG10004059 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MAKGNNTMGAIVIL----LLAINLATLVQPSRVNNDFNSPIWDGWVDEDRGITLRPCLDR 60
           M K +N+ GA++++    LL ++   LV PS ++++  S IW GW+D+DR   L  CL  
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSAKCQVELYNYYFNINKKELDLNCCVFVKVMGKKCARAFASWYKFSGLEIYEPNPMKV 120
           MKS KCQVELYNYYFN +KKE+DL+CCV+V  +G++CA +F SW+   G +  +PNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YTNCTGRLGA-LPPT 131
           Y NC  RL    PPT
Sbjct: 121 YNNCFKRLTVPAPPT 135

The following BLAST results are available for this feature:

BLAST of HG10004059 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	3.4e-54	81.60	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6578867.1	1.7e-53	79.20	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046841.1	6.3e-53	74.81	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAE8646662.1	1.6e-43	76.36	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KAG6575249.1	1.6e-40	60.00	hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10004059 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	1.6e-54	81.60	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	3.1e-53	74.81	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	8.9e-53	76.34	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	1.7e-35	59.50	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	2.1e-30	48.89	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of HG10004059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 53..120 e-value: 4.4E-7 score: 30.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004059.1	HG10004059.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity