HG10004050 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004050
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	light-harvesting complex-like protein OHP2, chloroplastic
Location	Chr08: 13180573 .. 13182760 (-)
RNA-Seq Expression	HG10004050
Synteny	HG10004050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGGCTTGTTCAATCCCCTTTGCCAATATCAAAATTCCTTCCACTTCCTCATCGCCGGCCACCGCTTCTCCCTCCGCCTCCGCCTCCTCTTCCGCTTCTTCATCCTCCCCTCACACTTCCATTCGATTCTCCTCTTCCAAGCCTTTCGTCTTCACTATCAGGAGCTCTCAGACCGAAGGCCCTCTTCGGAGACCGGCGGCTCCTTCTCTTAGAGAGCCGTCGCCCCCTTCGCCGCCTTCGCCGACGCCTCCTCTCAAACCTACTCCTCCATCGCAATCGCCTCCGTCGTCGACGTCTCCTGTTGCGAAACAGGATAATGTGATCACATTGGAGTTTCAGAGGCAGAGAGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAAGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTCGATTTCATTTCCCCCCTTTTCTACTTTGATTTTGTTGTGATTACTAGCTGGCTGTTATGATATTTCTTCTGCAATTAAATTAATATTATAGTTCTTGCCTGCAATTGACTGCCACTTCACTAATTCTCTTGTTGTACTTGTATTTGGTTTGACACTTTTTCTTTAAATTTTCTTTTAAGGAATACAATCCCTAGCTTTCCAGGAATTTAATATTATATGGTTTATTGATTATTATCGAAAATGGACATCTCGATTGTCTACTCCATTTGATAACCATTTGATTTTTAGTTTCGAATGTTTCTTGAGAAAGCTGAAATTAAAGAAATTTAGCGTAAACAAGCATACATTTCAAAATCAGAAAACTTAAAAGGAAATGGTTATAAATATTTCTATGTTTTTCATGCCTACTTGTTTAAACTACCCATCAGGATAAAGGCTTTTCTCTGACTTGTAGTAAGCTACAATGTGGTGCCAACTGCCAAAAGGCTTCAATAGGGCATGTTTGGGAGTGATATTAAAATCGTCAAAATCACTTTGGTCATTTTTAAAATCACTCAAAAGTACACTTTTATCACTCAAAATTAATTTAGTTTTCAATTTTGTACTTTTAAATGAAATTTTCAATCATCAAAATTAGTTTTGAAGGATTAAAAACATGTTTCATAGTAATTTTGAAAATGACAAAAAGAATTTTAGCCATTTTAAAATCACTCCGAAACATACCCAATTCGACTAGTCCTAGTTAATTTTGCTTATAGCTGCAAGTTTTGATTATGTTTAAGTGCCTAAACTCCCTTTCTTTCTTTACATTTTTGGATAACCAATCCATTTCCAATATAGAGTCGTTTGCAACACTTCCTCTGTTTGAGTAATTATATCCAGTAGTGTTTTGTGCTGATTTTATTCATACTTCAAGTGTTTTCCTTTTCAATTTATTCCTAAAGATTTGCATCTGATTGAGTTAAACTAGTCCTTTTGTGTATCTTCGTTCCATAATTTACTCAATCTCATAGTTGCTAGTAGGGGTGTATATAGGTTGGGGTGGTTTTTTAGACAAATTGGATATCCGAAAGACTCGAATAAGGTCTCCAACCTAACTCTTAAAATTTAGGTTGAGTTGGATTGTTGGGTTATTATTATTATTATTTTTAATTTAAAATACTTAAATTTATCTACAACACATGACTAATAAGTAAAATCTCATAAAACTCTAGTGTTAAATATCAAATATCCATAATATCTATTACAAACTTTAAATAAATATAAACATCGTAACAATACTAAAAGAAAAAAATACAAGAAATTCACAAATTCATCGTTTCAGAGTGAGTCAAACATTAAACAAAGACAACTATATATTTTTAGTTGTATATATGTAATTTGGGTTTCAACTTGGAAAAAAAAATATTCAACTCGAGACCCAACCCAATCCGACAAAAATAGAAAAAATTTAACCCAACCCAACTCTTACAGTATGGGATGGGTAGTCTAAGTTGTTCGGGTTGTTGGATCTTCTAAACACCTCTAATTCCTATGCTAGTAGAAATCAGCTGTTCAGTTTACTGTTAATGGGTGGGTCTTCACTACTCTTACTGGGTTGTTTTTCATTGAACAGGTGGGCTATGTTTGGTTTTGCTGTTGGATTACTGACAGAATATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTTCTCTCAAATTTTGGGATAGTAGATCTCGAATGA

mRNA sequence

ATGTCGGGGGCTTGTTCAATCCCCTTTGCCAATATCAAAATTCCTTCCACTTCCTCATCGCCGGCCACCGCTTCTCCCTCCGCCTCCGCCTCCTCTTCCGCTTCTTCATCCTCCCCTCACACTTCCATTCGATTCTCCTCTTCCAAGCCTTTCGTCTTCACTATCAGGAGCTCTCAGACCGAAGGCCCTCTTCGGAGACCGGCGGCTCCTTCTCTTAGAGAGCCGTCGCCCCCTTCGCCGCCTTCGCCGACGCCTCCTCTCAAACCTACTCCTCCATCGCAATCGCCTCCGTCGTCGACGTCTCCTGTTGCGAAACAGGATAATGTGATCACATTGGAGTTTCAGAGGCAGAGAGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAAGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGGGCTATGTTTGGTTTTGCTGTTGGATTACTGACAGAATATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTTCTCTCAAATTTTGGGATAGTAGATCTCGAATGA

Coding sequence (CDS)

ATGTCGGGGGCTTGTTCAATCCCCTTTGCCAATATCAAAATTCCTTCCACTTCCTCATCGCCGGCCACCGCTTCTCCCTCCGCCTCCGCCTCCTCTTCCGCTTCTTCATCCTCCCCTCACACTTCCATTCGATTCTCCTCTTCCAAGCCTTTCGTCTTCACTATCAGGAGCTCTCAGACCGAAGGCCCTCTTCGGAGACCGGCGGCTCCTTCTCTTAGAGAGCCGTCGCCCCCTTCGCCGCCTTCGCCGACGCCTCCTCTCAAACCTACTCCTCCATCGCAATCGCCTCCGTCGTCGACGTCTCCTGTTGCGAAACAGGATAATGTGATCACATTGGAGTTTCAGAGGCAGAGAGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAAGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGGGCTATGTTTGGTTTTGCTGTTGGATTACTGACAGAATATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTTCTCTCAAATTTTGGGATAGTAGATCTCGAATGA

Protein sequence

MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQTEGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLE

Homology

[Close]

BLAST of HG10004050 vs. NCBI nr
Match: XP_038884716.1 (light-harvesting complex-like protein OHP2, chloroplastic [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-82
Identity = 178/190 (93.68%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATA-SPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQ 60
           MSGACSIPFA IKIP  SSSPA A SPSASASSSASSSSPHTS+RFSSSKPFVFTIRSSQ
Sbjct: 1   MSGACSIPFAKIKIPPPSSSPAAAVSPSASASSSASSSSPHTSLRFSSSKPFVFTIRSSQ 60

Query: 61  TEGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRA 120
           TEGPLRRPAAPSLREPSPPSP SPTPPLKPTPP QSPPS  SPV KQDNVITLEFQRQ+A
Sbjct: 61  TEGPLRRPAAPSLREPSPPSPSSPTPPLKPTPPPQSPPSPVSPVVKQDNVITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLE 190
           LSNFGIVDLE
Sbjct: 181 LSNFGIVDLE 190

[Close]

BLAST of HG10004050 vs. NCBI nr
Match: XP_023551626.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 5.1e-80
Identity = 173/189 (91.53%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+TSSSPATASPSASA+SSASSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPP    P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. NCBI nr
Match: XP_022939849.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 172/189 (91.01%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+TSSSPATASPSASA+SSASSSS H+SIRFSS+KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPP    P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. NCBI nr
Match: KAG7016405.1 (Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79
Identity = 172/189 (91.01%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+TSSSPATASPSASA+SSASSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASANSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKP PP    P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPNPPPSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. NCBI nr
Match: XP_022993308.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 305.8 bits (782), Expect = 2.5e-79
Identity = 172/189 (91.01%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+ SSSPATASPSASA+SSASSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPS   P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. ExPASy Swiss-Prot
Match: Q9FEC1 (Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP2 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-42
Identity = 113/173 (65.32%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 19  SSPATASPSASASSSASSSSPHTSIRFS-SSKPFVFTIRSSQTEGPLRRPAA-PSLREPS 78
           +SP       + SSS+SSS+  +S RFS ++KP VF IR SQTEGPLRRP+A P+LREP 
Sbjct: 4   ASPIQCIRILNPSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQ 63

Query: 79  PPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAKELQEYFKQKKLDEADQ 138
            P PPS   P    PP  SPP   +      +V T+EFQRQ+AKELQEYFKQKKL+ A Q
Sbjct: 64  KPVPPS--QPSSSPPP--SPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQ 123

Query: 139 GPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLE 190
           GPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DLE
Sbjct: 124 GPFFGFQPKNEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

[Close]

BLAST of HG10004050 vs. ExPASy TrEMBL
Match: A0A6J1FIC8 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445596 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.5e-80
Identity = 172/189 (91.01%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+TSSSPATASPSASA+SSASSSS H+SIRFSS+KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPP    P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. ExPASy TrEMBL
Match: A0A6J1K1U3 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489352 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 172/189 (91.01%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACSIPFA IKIP+ SSSPATASPSASA+SSASSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAK 120
           EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPS   P S +  AK DNVITLEFQRQ+AK
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQTPPSPAYAAKLDNVITLEFQRQKAK 120

Query: 121 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180
           ELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL
Sbjct: 121 ELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILL 180

Query: 181 SNFGIVDLE 190
           SNFGIVDLE
Sbjct: 181 SNFGIVDLE 189

[Close]

BLAST of HG10004050 vs. ExPASy TrEMBL
Match: A0A1S3B3J8 (proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC103485601 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.8e-78
Identity = 173/194 (89.18%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPA----TASPSASASSSASSSSP-HTSIRFSSSKPFVFTI 60
           MSGACSIPFANIKIPSTSSSPA     ASPSASASSSASSSS  H+S+RF SSKPF+FTI
Sbjct: 1   MSGACSIPFANIKIPSTSSSPAATASAASPSASASSSASSSSSLHSSLRFHSSKPFLFTI 60

Query: 61  RSSQTEGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQ 120
           RSSQTEGPLRRP+APSLR+PSPPSPPSPTPPLKP+PPSQSPP   SPV KQDNVITLEFQ
Sbjct: 61  RSSQTEGPLRRPSAPSLRDPSPPSPPSPTPPLKPSPPSQSPP---SPVLKQDNVITLEFQ 120

Query: 121 RQRAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180
           R +AKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
Sbjct: 121 RLKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180

Query: 181 VKILLSNFGIVDLE 190
           VKILLSNFGI+DLE
Sbjct: 181 VKILLSNFGIIDLE 191

[Close]

BLAST of HG10004050 vs. ExPASy TrEMBL
Match: A0A6J1JS47 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487322 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.2e-72
Identity = 163/193 (84.46%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFA IKIP+ SSS A  SPSASA SS SSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQ----SPPSSTSPVAKQDNVITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKPTP S     S PS+ + VAKQDN ITLEFQR
Sbjct: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQR 120

Query: 121 QRAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           Q+AKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLE 190
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLD 190

[Close]

BLAST of HG10004050 vs. ExPASy TrEMBL
Match: A0A6J1HG91 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464005 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.7e-71
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFA IKIP+ SSS A  SPSASA+SS SSSS H+SIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQ----SPPSSTSPVAKQDNVITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKP P S     + PS  + VAKQDN ITLEFQR
Sbjct: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQR 120

Query: 121 QRAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           Q+AKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLE 190
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLD 190

[Close]

BLAST of HG10004050 vs. TAIR 10
Match: AT1G34000.1 (one-helix protein 2 )

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-43
Identity = 113/173 (65.32%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 19  SSPATASPSASASSSASSSSPHTSIRFS-SSKPFVFTIRSSQTEGPLRRPAA-PSLREPS 78
           +SP       + SSS+SSS+  +S RFS ++KP VF IR SQTEGPLRRP+A P+LREP 
Sbjct: 4   ASPIQCIRILNPSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQ 63

Query: 79  PPSPPSPTPPLKPTPPSQSPPSSTSPVAKQDNVITLEFQRQRAKELQEYFKQKKLDEADQ 138
            P PPS   P    PP  SPP   +      +V T+EFQRQ+AKELQEYFKQKKL+ A Q
Sbjct: 64  KPVPPS--QPSSSPPP--SPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQ 123

Query: 139 GPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLE 190
           GPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DLE
Sbjct: 124 GPFFGFQPKNEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

The following BLAST results are available for this feature:

BLAST of HG10004050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884716.1	4.2e-82	93.68	light-harvesting complex-like protein OHP2, chloroplastic [Benincasa hispida]	[more]
XP_023551626.1	5.1e-80	91.53	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp....	[more]
XP_022939849.1	1.1e-79	91.01	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]	[more]
KAG7016405.1	1.9e-79	91.01	Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperm...	[more]
XP_022993308.1	2.5e-79	91.01	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]	[more]

BLAST of HG10004050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEC1	3.4e-42	65.32	Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of HG10004050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIC8	5.5e-80	91.01	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1K1U3	1.2e-79	91.01	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A1S3B3J8	8.8e-78	89.18	proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JS47	7.2e-72	84.46	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1HG91	4.7e-71	83.42	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]

BLAST of HG10004050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34000.1	2.4e-43	65.32	one-helix protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..98
None	No IPR available	PANTHER	PTHR14154:SF83	MYB-LIKE PROTEIN U	coord: 1..188
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..188
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 135..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004050.1	HG10004050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0050833	pyruvate transmembrane transporter activity