HG10004040 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004040
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 13079771 .. 13079971 (-)
RNA-Seq ExpressionHG10004040
SyntenyHG10004040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCACTTCCAAGCTTTCGGGTCGTCGTCGGAAGCGCCTTCAGTGTCCCTAATTGAAGCTTCGGCCATGGATTTTACAGCTTGGGCGTCGAGGCGAGATCTCTCGGCCTCGAATGCTACTTCGTCGAAAGCACAATCCCGTTGGGTTTCTCTGCCACCATTTTTACTGCTCTCCAGCTTGAAGTGCCTCTGGAACTGA

mRNA sequence

ATGATCCACTTCCAAGCTTTCGGGTCGTCGTCGGAAGCGCCTTCAGTGTCCCTAATTGAAGCTTCGGCCATGGATTTTACAGCTTGGGCGTCGAGGCGAGATCTCTCGGCCTCGAATGCTACTTCGTCGAAAGCACAATCCCGTTGGGTTTCTCTGCCACCATTTTTACTGCTCTCCAGCTTGAAGTGCCTCTGGAACTGA

Coding sequence (CDS)

ATGATCCACTTCCAAGCTTTCGGGTCGTCGTCGGAAGCGCCTTCAGTGTCCCTAATTGAAGCTTCGGCCATGGATTTTACAGCTTGGGCGTCGAGGCGAGATCTCTCGGCCTCGAATGCTACTTCGTCGAAAGCACAATCCCGTTGGGTTTCTCTGCCACCATTTTTACTGCTCTCCAGCTTGAAGTGCCTCTGGAACTGA

Protein sequence

MIHFQAFGSSSEAPSVSLIEASAMDFTAWASRRDLSASNATSSKAQSRWVSLPPFLLLSSLKCLWN
Homology
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BLAST of HG10004040 vs. ExPASy TrEMBL
Match: A0A0A0K9I1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055970 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MIHFQAFGSSSEAPSVSLIEASAMDFTAWASRRDLSASNATSSKAQSRWVSLPPFLLLSS 60
          M HFQAFGSSSEAPSVSLIEASA+DF AWASRRDLSASNA SSK  SR VS+PPFL+LS 
Sbjct: 5  MTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFLVLSR 64

Query: 61 LKCL 65
          LKCL
Sbjct: 65 LKCL 68

The following BLAST results are available for this feature:
BLAST of HG10004040 vs.
Match NameE-valueIdentityDescription
BLAST of HG10004040 vs.
Match NameE-valueIdentityDescription
BLAST of HG10004040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9I13.6e-1884.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055970 PE=4 SV=1[more]
BLAST of HG10004040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10004040.1HG10004040.1mRNA