HG10004029 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004029
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	Chr08: 12953498 .. 12958198 (-)
RNA-Seq Expression	HG10004029
Synteny	HG10004029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGTAAGAGAAAGAACCCTTGAAAGCAAAGCAATCAACAATCAACAAAGAAGCAAAATCACTTATCTGAGCAAAACCCGCCAAGAGCTGAAGACCCAGAAAGGAGGAAACAGATCCAAGCGCTTATTGGGTGTATGTGGCGATCGAGAAGAGAAAAAGGGAAGGGAGGGATGTGGGTTTTATTGTATTTTAAGAAGGAAAAATGGAAAAATGTCAAATGGGTGGGCGAAAGAACCGATCAGAGAAGCCAATACGAATGCGTAGGTTAAATTTTTATGGAGGTTCAATGAATGAATGGGAGGATCATTTAAAATTGACGTCACAAATGCAGACAAAAACTTGTTGCGTGCTATTGGGTTGTGTTAATCATATCAAATATACCATGTTTGAGCAGCATCTCCTCAATAAGTATTAACGTCCGTTTCTTTGATTTTGGCTGCTTCAACTTCAAGACTTTGATTCTCAAAATTTTCATCTTTTTTTTTTCCCTTTTTCTTTCTACACTCGCTAGACTCAACTGCGTATTCAAAAGTGATTCCTTTTTAGGAGTAAAGTTCTGTTTTTCCATTCTTGTTCTAAGGAGGAAAAAGATTGTCTTTTTTTGAGTTAAAAAAGGTTTTTGTTTTTGTTAATTTTACCATCACGTTCTATCGGATCTTTTTATTATTATAGAAATGGGTTATTTGAAGTTTTATTTAATAACGATTCCATTTTATTTATTTTTTTGTTTATTTAGCACGAAATGCCAAATTTTACTATGGTTTTTATTTTTGTTTTTATTTATTTTGCTTTTAATTCCATGTTTAGAGCATCTCTTTTTTACTTTCTGTACCCTTCTTTGTTTTCTTATATATATATATTCTTTATTTTTTAATTAAAATAAATATTATCAGTTAGATGTATCACTCTTTTTGGTTATATAGTATATGTTTTTACTTTTTTAGAAGGATATACAAATTTAAATTGAAATTAATATTTATTTTATAAAAATCTTAAATTAATATATATTATTTAAGTTGAATTTATATTAAATTAAATTAATTATACGTTAATAAATAGACGTGAGGACATTCTTAGAACATTATATAAATTTAAGGCATTTTTAATTAGAAATCCTACTAAACAAATATAGTTATTTAAATATTCACAAATATTTTTAAACATATTCTTACAAAACAAACATGGTTATCTAAAGACATCAGTATTCATAATTCTCGGCATCTAAAGATTCCAGTTATTTACATTAGAAAAACAAACAACAACAAACGGTCCTTTTAAGTCATTGATTTTGTAGAATTTGTTAAAGTTGTTACTCTCCTAGGCAATATCATTATTGCTGTGGAAGTTGTCATTTTATCCCTTTTGAGTAAAGACAAATTCTTCCATTATCTTAAATTTACTTGAATTGAAGGTCATGACCATTTTCAATAACGAAGTGCAAGTTTTTGTTAATGATATGCTAGCTTTCTATTGTCGAAGACTCATTATGGAATTCTCTTTTAGTTCTCAAAGTGGTAATTCAATTGCTCACTGTCTAGTTTGTCATGCTCGAAAGACCAATCTCTTAATTGTATGGATTGAAGAATACACTCCATAAGTGGGTACATGTCAATTCTTTAGTTATGATTTTTGTTCTAATTTTTCTAAAAAATGAAAAGGTAGTGTATATATATATATAGGAAAATTATTATAAACATAAAAAATATCAAACTTTATCGTAGTCTATCGCGGATAGATAATAAATTTTTTCTATATTTATAAATAGTTTGACTCATTTTTCTATATTTGAAAACAATCCGTATGTATATATATAAAATGTGTATGTATAATTGATAAAATAAATAATTTGGAGGAAGGATAAAGTATTATTGGAAATTTGGAATAAGATCCTTAAAAACAAATATGGGTCGGGTCGGGTCTACAAAGAGAGTAGTATTGGGCCATCGGCGTTGGCATTTGGTTTTGGACTGCAATTCGATTTCGACGACTGTGGGGATCGGAAACTCATAAATCCCACTCTTCAGTTTGCGATTTCAGAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATTCTCCTTCATTGTTTCGTCGTTTTTCCCTTTTTTTGTTTATCTTCTCTGTTTCTTTTCTCTAATTATGTCGTCTCCCTATCTCTCTACCCCCTTTAATCGAATACCCCCAATTGTTGGGTTTTATAGTGTGTTTTTTTTCCCCTTTCGATCAAATGAATGTTCTGGAGAATTAGGGTTTTGTAATTGTTTTGAGTTTCTTGATGGGGTTCCCTTGAAATTTGCTTACACTCATTTTTGTTGAAAAAGGATACACTTTAGTTGCTTTCAGTAAGCCATTAATCTTTCTTCAATTTTTTGTGTTTGACATGGGGTAGGGGTTGGTTTGGATTGAACTTCTCTATTTTGGGGGAATGGAATTGGATGAATTGGTTGAAGTGCCCTAATGGTGAAATGTATCAAAGATAAAGCAGACGCGTTCCACATAAATCTCTGGTCTTACCCATTGGAAATTAAGTAGAATGACGACTATTTTAGCATGATCTGCTTCTTATCATCTACAGAGATGTTCCATTGTGAATGTGGTTAACAGAGACTCTAAACATTACAATTATTTAACGAATATGGTCAATTGTTTTAGGTTAAGATGTTGTTTATGATTAGTAGCTGATCTGTCTATTGCATTTCTTTTAGTTTTGAGATGTTATTGTGAATGCAAAATTTTCAGCTTTGATTAAAATGTATCTTCATTTTTATCATTGATTACTGAGATTTTCCTTTCCTGGAGATTGAACTGCTTTCTTTTGCTGGCTATCATGTCTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGGTATGCTTGTTTTCTTAACTGCCCCCTCCCTCTCTCAAGGATATGGGAATTATTCATAGAAAGAGAGTTTGCCAAAAATTTAAGGAAAAAAACGAGTCCTGCATTAGGGTTGTTTGTAACTCTGCACCAATCTTGGTGGTTATCTCGAATGTAGTTAAATAGTGTTCTTAAGAGAATAGTTGAAATGAGCATAAGCTAGTCAGGATAAAAAGTCTTGGTATTTAGGTCCATGCTGTAAAACAAACATGTACCATACTGGAGTCCATTTCATAAGCACTTAATGTACTACCATACAGAAGATAGTTTGAATACTCTAAGTTGATCTTATTTTCAAGTAAATCAGGTGAGTTTACAGAAGTCAACACTGGATTACAAGCGTACATTGCGTTTTTAAAGGAAATAAATACCTATTGCTCAAAAGTTTGAAGTTTCATACCTAAGGAATGAAAGAAAAGAAAATACCCCGTGTCCCTCAAGCTGGTTCATCGAGTCTATATTTCCATACTTGATATGTTAACTCCAGTATTTCTCGTTTATACTTCAATTCAAATTTCATATATTTGTCTATTTTCCTTTCCAGACATCCAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAACTATCAGTCATTTGCGTGCATCCTAAATGGGAACTCCTTATTCGTCATCTCTACCAAATTGACTGGAGCTGGAATACTGTCAAGTTCTCGACACCATTCATAGACTAGGCTTTATCCTTCAGTTGTTATGCATATGTTGTTCTATTACATAAACTAGTTAGTTGTTTCGATGTATTCCAGTCGTAACTGTAGTTTTTGACATTTTAATTGGCTGCACAAGTTGAATGCCTTCAGATTTTGAATGCAAGGCCAAGTAAACGAAACTTGAAATTGTGCATCTAAGCATAGAGAATCGAGCCTCGCTTGGTTTCTTATCTGTTTGAAAAGCTTGTTTTGTTGGATTCTTGAACTCGTTTATTTTTACAATTAGTTGAAGGACATTTGATGTATTTCTATTCGTTAACGAGTATCATGAATTGATCTCAAATGAGCTCTGAAACCGTTATCTTCATTTTATAACGGTTTCTTTGTCATATGTTTCAGGCACAATGACATGAAACTATTATCCTTTGTGTTTCTATATTCCCATCACATCTTGATCTTCCTTCCCTTGATGAAAATTATGGAATGGTATGATTAATGAAATGTACAATTTAAATTGTTTACTTGAATAGCTTTTCAATTCAGGCTATCAATTTTCACTAGATCAAAGACAACATTCAGATTTTCTTTATTCAAACTCACAGGAATTGATTTATGACTCTACTATACATTAAAATCAGGTGGATGAGGCAAAAGTAAATGGGTCCTAACCTGAAAAACTGGACTCTCGATCACCTCACCTAAATTAGTTTATAGATGTGTCTCCTTCATAAATATTCAAGCTCCATAATCTTATTCAATAGTTTTCTTCATTAAATCCAGAAATTTCTCTGGGGCACCTCATGGCAGCTTCGATTTGCGCCCGACAGGGAAGACAATACAGCTCCATTGCCATTTGCCTTCTACTTCATCGATGCCGAGCTCGTTGCTTTGAACTCCCAAACTTGA

mRNA sequence

ATGGGAAAGGTAAGAGAAAGAACCCTTGAAAGCAAAGCAATCAACAATCAACAAAGAAGCAAAATCACTTATCTGAGCAAAACCCGCCAAGAGCTGAAGACCCAGAAAGGAGGAAACAGATCCAAGCGCTTATTGGGTGTATGTGGCGATCGAGAAGAGAAAAAGGGAAGGGAGGGATGTGGGTTTTATTGTATTTTAAGAAGGAAAAATGGAAAAATGTCAAATGGGTGGGCGAAAGAACCGATCAGAGAAGCCAATACGAATGCAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGAAATTTCTCTGGGGCACCTCATGGCAGCTTCGATTTGCGCCCGACAGGGAAGACAATACAGCTCCATTGCCATTTGCCTTCTACTTCATCGATGCCGAGCTCGTTGCTTTGAACTCCCAAACTTGA

Coding sequence (CDS)

ATGGGAAAGGTAAGAGAAAGAACCCTTGAAAGCAAAGCAATCAACAATCAACAAAGAAGCAAAATCACTTATCTGAGCAAAACCCGCCAAGAGCTGAAGACCCAGAAAGGAGGAAACAGATCCAAGCGCTTATTGGGTGTATGTGGCGATCGAGAAGAGAAAAAGGGAAGGGAGGGATGTGGGTTTTATTGTATTTTAAGAAGGAAAAATGGAAAAATGTCAAATGGGTGGGCGAAAGAACCGATCAGAGAAGCCAATACGAATGCAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGAAATTTCTCTGGGGCACCTCATGGCAGCTTCGATTTGCGCCCGACAGGGAAGACAATACAGCTCCATTGCCATTTGCCTTCTACTTCATCGATGCCGAGCTCGTTGCTTTGAACTCCCAAACTTGA

Protein sequence

MGKVRERTLESKAINNQQRSKITYLSKTRQELKTQKGGNRSKRLLGVCGDREEKKGREGCGFYCILRRKNGKMSNGWAKEPIREANTNAAPNTPKMATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRFAPDREDNTAPLPFAFYFIDAELVALNSQT

Homology

[Close]

BLAST of HG10004029 vs. NCBI nr
Match: XP_042965374.1 (sm-like protein LSM3A isoform X2 [Carya illinoinensis] >KAG6624251.1 hypothetical protein CIPAW_16G013200 [Carya illinoinensis])

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-29
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MA+EE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MASEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVRKFLWGTSW 175
           IDDETYEEIVR+   G +W
Sbjct: 61  IDDETYEEIVRELHIGETW 79

[Close]

BLAST of HG10004029 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 4.5e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. NCBI nr
Match: PPS16970.1 (hypothetical protein GOBAR_AA03610 [Gossypium barbadense])

HSP 1 Score: 138.7 bits (348), Expect = 5.9e-29
Identity = 73/83 (87.95%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVRKFLWGTSWQLRF 179
           IDDETYEEIVR         LRF
Sbjct: 61  IDDETYEEIVRLIPTAKCILLRF 83

[Close]

BLAST of HG10004029 vs. NCBI nr
Match: MBA0733595.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVRKFLWGTS 174
           IDDETYEEIVR + + T+
Sbjct: 61  IDDETYEEIVRVYYYFTT 78

[Close]

BLAST of HG10004029 vs. NCBI nr
Match: KAG8497044.1 (hypothetical protein CXB51_008282 [Gossypium anomalum])

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-28
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-29
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-28
Identity = 60/71 (84.51%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-25
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 102 STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 161
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 162 EEIVR 167
           EEI +
Sbjct: 72  EEIYK 76

[Close]

BLAST of HG10004029 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-25
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 102 STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 161
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 162 EEIVR 167
           EEI +
Sbjct: 72  EEIYK 76

[Close]

BLAST of HG10004029 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-25
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 102 STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 161
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 162 EEIVR 167
           EEI +
Sbjct: 72  EEIYK 76

[Close]

BLAST of HG10004029 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy TrEMBL
Match: A0A6J1BV62 (U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC111006032 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. ExPASy TrEMBL
Match: A0A2P5YMZ8 (Sm domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03610 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-29
Identity = 73/83 (87.95%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVRKFLWGTSWQLRF 179
           IDDETYEEIVR         LRF
Sbjct: 61  IDDETYEEIVRLIPTAKCILLRF 83

[Close]

BLAST of HG10004029 vs. ExPASy TrEMBL
Match: A0A7J9BB94 (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium gossypioides OX=34282 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           MATEE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1   MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 156 IDDETYEEIVRKFLWGTS 174
           IDDETYEEIVR + + T+
Sbjct: 61  IDDETYEEIVRVYYYFTT 78

[Close]

BLAST of HG10004029 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 60/71 (84.51%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 96  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 155
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 156 IDDETYEEIVR 167
           IDDETYEEIVR
Sbjct: 61  IDDETYEEIVR 71

[Close]

BLAST of HG10004029 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 6.9e-04
Identity = 22/65 (33.85%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 92  NTPKMATEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 151
           +T +  TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E
Sbjct: 8   DTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVRE 67

Query: 152 IVTTV 155
           + T V
Sbjct: 68  MWTEV 72

[Close]

BLAST of HG10004029 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 6.9e-04
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 98  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 155
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

[Close]

BLAST of HG10004029 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 6.9e-04
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 98  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 155
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

The following BLAST results are available for this feature:

BLAST of HG10004029 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042965374.1	3.4e-29	88.61	sm-like protein LSM3A isoform X2 [Carya illinoinensis] >KAG6624251.1 hypothetica...	[more]
XP_022133461.1	4.5e-29	100.00	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]
PPS16970.1	5.9e-29	87.95	hypothetical protein GOBAR_AA03610 [Gossypium barbadense]	[more]
MBA0733595.1	7.6e-29	89.74	hypothetical protein [Gossypium gossypioides]	[more]
KAG8497044.1	1.0e-28	98.59	hypothetical protein CXB51_008282 [Gossypium anomalum]	[more]

BLAST of HG10004029 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6K5	6.1e-29	90.14	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q9LMN4	1.8e-28	84.51	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q32PE9	7.0e-25	84.62	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	7.0e-25	84.62	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	7.0e-25	84.62	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of HG10004029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZX1	2.2e-29	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGZ1	2.2e-29	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1BV62	2.2e-29	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A2P5YMZ8	2.8e-29	87.95	Sm domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03610 PE...	[more]
A0A7J9BB94	3.7e-29	89.74	U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium gossypioides OX=34282 GN=L...	[more]

BLAST of HG10004029 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76860.1	4.3e-30	90.14	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	1.3e-29	84.51	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	6.9e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.2	6.9e-04	35.59	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	6.9e-04	35.59	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 109..156 e-value: 2.1E-8 score: 43.9
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 111..155 e-value: 1.8E-13 score: 50.0
None	No IPR available	GENE3D	2.30.30.100		coord: 80..180 e-value: 1.3E-19 score: 71.9
None	No IPR available	PANTHER	PTHR13110:SF9	SM-LIKE PROTEIN LSM3A	coord: 96..167
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 96..167
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 106..167 e-value: 8.80826E-42 score: 134.275
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 105..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004029.1	HG10004029.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding