HG10004020 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004020
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SASA domain-containing protein
Location	Chr08: 12863643 .. 12865770 (-)
RNA-Seq Expression	HG10004020
Synteny	HG10004020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCAACTCAGGACAACTATAAAACGGTAAGGCAAAGAATGAGAAAAGGTTGTAACTCTCACCCATATGCCATTAAATCAAAACAACCTTATTTCATCACAACAAACCTCCCAAAGTACTAAAAAAAGAACCCAAAAACACACTCTATATATATATAAATAACTAATAAGAGACCAAAGCAAATAAATCAAATTAATTAAACAAACAATTTTGTGAGGAAAGAAAAAAAATATGACCGATTCAATTCCTAGTTCAAAAGCTACAACTTTTCCAAACAACATTTTTATTCTTGCAGGACAGAGTAACATGGCTGGCCGAGGTGGGGTCTCGCAAGACCCAACCACAGACAAAATGGTATGGGATGGATATATCCCGCCCGAATGTCAATCCAACGACTCGATCTTTCGATTGACAGCTGATTTGGTATGGGAACAAGCCCATGAACCACTACATTGGGATATTGATGTTGTAAAGACCAATGGGATTGGACCTGGCATGGCTTTTGCTAATGAGCTATTGGCTATAGCTGGGGAGAGCATTGGGACTATTGGTCTTGTTCCATGTGCTATTGGAGGATCTCATTTGAGAGAATGGGTTAAAGGGACTGATAGGTATACCAATTTGGTTGATAGGATTAAGGCTTCAGAAAAAAATGGAGGGAAAGTTCAAGGATTTTTATGGTATCAAGGAGAGTCTGATGCTGCTGTTGAAGAAGAAGCTATGTGTTATGAAAGAGAGCTCACTAAGTTATTCGTCGACTTGCGTGCGGACGTGAACCACCCGGACCTACCCTTTATCGTGGTTTGTCATCGTATTTTCATGCCTATAAATACTTTTTGAAAAACAATAAAAATATTTGAGTGCACCTGGACTGCAGCTCAAATTCCAATTATTCAATATGTCATGTAACAAATTTTTCTTTTTTAAAAATTTATTTTTTAAATAGCAATACTTGAGCGTATAAATCCTAAGATACACTTCTCTTTGTGCATCTTACTCTCATCACATACATAAAAATGTCAATTAAATATTTGAAGAAAAAAGTAAAAATAATTTGTCACGTGACAAACTATATGATTAGATTATTTGGTGAGATACACAAAGATATGTGTAACCTAGGAAGCACCTAAGTATTTTTCTTTTTTTTTTTAATATTTTTTTCATTGTGATTGAAGTGGATGCACATGAATATGATATAGCCTAGGTTGCATCCAAGTATTGTTAAAAAAAAGAAATACATTTTTGGTCAAAGTTTTGAGTTTAGCAAGATATTTTGAAAAAATATATTTTTTTCGTTTTCTCACTCTGTCTCTCCACGTGTCAGGCTCCTTCTCTGTTCATGTAGAACAAAGGGAGAAACTCTCTCTCTCCCCTCATTTCATATCATGGGAGAAGGAGGTGTTGGGCAGACAATAGGTAGAGTTGAGAGAGTGGGAAAAAGAAAAATACTTTTTATTTTTTAAAAAAAATTAAAAAATTATAGTGTGTTAGGGCACTGAGTTGAATTATGAAGTCTGTGTTTAGAATATAGAGTTGTAAGATAGAGTTCCTCAATAAATATGCATAATAAATATAGAGTTTGTTGATAAATGTGCAAACTTCAACCGTATTTAATACCAACTTACGTTGGTGAGCCAAATACCCTCTATATTTTTAATTTAAAAAGTGTCATTTTAGCTTATGTTAGTTACCGTAATGAAAAGCCGACAGCGTGAATCATACCAAACTAAAACCTCAGTGATTAAAATGTCAGCTCGAAAGTTCATCGAACAATAAAATGCTACCAAATCCAAACATTAAATACCAAAAGTGTATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATTTCTTATTGTAACGCAGGTGAAGATAGTAACTCATGATTTTTTTATAAGTCCAAATATAAGCTTCAAGGAAGAAGTATGGAAGGCATTGGAGGCAGTGACACAGAAGCTACCAAACGTAAGAATGGTGGACGGTCCAATGGCAGTGGGCAACTTTGATGAAGGGCTTAACGAAGATAAAGGTCATCTCAACGTTAAATCTGAAGTCAAATTAGGCAAAATGTTTGCTCATTCCTTTTATTCAAACTTTGGTCACAACTTCATTTTCTAA

mRNA sequence

ATGAAGCCAACTCAGGACAACTATAAAACGGTGAAGATAGTAACTCATGATTTTTTTATAAGTCCAAATATAAGCTTCAAGGAAGAAGTATGGAAGGCATTGGAGGCAGTGACACAGAAGCTACCAAACGTAAGAATGGTGGACGGTCCAATGGCAGTGGGCAACTTTGATGAAGGGCTTAACGAAGATAAAGGTCATCTCAACGTTAAATCTGAAGTCAAATTAGGCAAAATGTTTGCTCATTCCTTTTATTCAAACTTTGGTCACAACTTCATTTTCTAA

Coding sequence (CDS)

ATGAAGCCAACTCAGGACAACTATAAAACGGTGAAGATAGTAACTCATGATTTTTTTATAAGTCCAAATATAAGCTTCAAGGAAGAAGTATGGAAGGCATTGGAGGCAGTGACACAGAAGCTACCAAACGTAAGAATGGTGGACGGTCCAATGGCAGTGGGCAACTTTGATGAAGGGCTTAACGAAGATAAAGGTCATCTCAACGTTAAATCTGAAGTCAAATTAGGCAAAATGTTTGCTCATTCCTTTTATTCAAACTTTGGTCACAACTTCATTTTCTAA

Protein sequence

MKPTQDNYKTVKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVKSEVKLGKMFAHSFYSNFGHNFIF

Homology

[Close]

BLAST of HG10004020 vs. NCBI nr
Match: XP_038885906.1 (probable carbohydrate esterase At4g34215 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 5.3e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFFISPNISFKEEVWKALEAVT KLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK
Sbjct: 191 VKIVTHDFFISPNISFKEEVWKALEAVTHKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFI 93
           SEVKLGKMFAHSFYSNF HNFI
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFI 272

[Close]

BLAST of HG10004020 vs. NCBI nr
Match: XP_008441649.2 (PREDICTED: probable carbohydrate esterase At4g34215 [Cucumis melo] >KAA0054896.1 putative carbohydrate esterase [Cucumis melo var. makuwa] >TYK11023.1 putative carbohydrate esterase [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 7.1e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFF+SPNISFKEEV KALEAVT  LPNV MVDGPMAVGNFD+GLNEDKGHLNVK
Sbjct: 191 VKIVTHDFFLSPNISFKEEVLKALEAVTHNLPNVTMVDGPMAVGNFDDGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFIF 94
           SEVKLGKMFAHSFYSNF HNF+F
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFLF 273

[Close]

BLAST of HG10004020 vs. NCBI nr
Match: XP_004141016.1 (probable carbohydrate esterase At4g34215 [Cucumis sativus] >XP_031745437.1 probable carbohydrate esterase At4g34215 [Cucumis sativus] >KGN46153.1 hypothetical protein Csa_004972 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.9e-34
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VK+VTHDFF+SPNISFKEEV  ALEAVT +LPNV MVDGPMAVGNFD+GLNEDKGHLNVK
Sbjct: 191 VKLVTHDFFLSPNISFKEEVCNALEAVTHRLPNVTMVDGPMAVGNFDDGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFI 93
           SEVKLGKMFAHSFYSNF HNF+
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFL 272

[Close]

BLAST of HG10004020 vs. NCBI nr
Match: KAG7016422.1 (putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-31
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFFISP+  FKEEVW A EAVTQKLPNVRMVDG +AVGNFDEGLNED+GHLNVK
Sbjct: 183 VKIVTHDFFISPDFEFKEEVWNAQEAVTQKLPNVRMVDGRVAVGNFDEGLNEDRGHLNVK 242

Query: 71  SEVKLGKMFAHSFYSNFGH 90
           SEV LGKMFAHS+YSNF H
Sbjct: 243 SEVNLGKMFAHSYYSNFAH 261

[Close]

BLAST of HG10004020 vs. NCBI nr
Match: XP_023550941.1 (probable carbohydrate esterase At4g34215 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-31
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFFISP+  FKEEVW A EAVTQKLPNVRMVDG +AVGNFDEGLNED+GHLNVK
Sbjct: 183 VKIVTHDFFISPDFEFKEEVWNAQEAVTQKLPNVRMVDGRVAVGNFDEGLNEDRGHLNVK 242

Query: 71  SEVKLGKMFAHSFYSNFGH 90
           SEV LGKMFAHS+YSNF H
Sbjct: 243 SEVNLGKMFAHSYYSNFAH 261

[Close]

BLAST of HG10004020 vs. ExPASy TrEMBL
Match: A0A5D3CGI9 (Putative carbohydrate esterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00750 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFF+SPNISFKEEV KALEAVT  LPNV MVDGPMAVGNFD+GLNEDKGHLNVK
Sbjct: 191 VKIVTHDFFLSPNISFKEEVLKALEAVTHNLPNVTMVDGPMAVGNFDDGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFIF 94
           SEVKLGKMFAHSFYSNF HNF+F
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFLF 273

[Close]

BLAST of HG10004020 vs. ExPASy TrEMBL
Match: A0A1S3B3Y0 (probable carbohydrate esterase At4g34215 OS=Cucumis melo OX=3656 GN=LOC103485730 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFF+SPNISFKEEV KALEAVT  LPNV MVDGPMAVGNFD+GLNEDKGHLNVK
Sbjct: 191 VKIVTHDFFLSPNISFKEEVLKALEAVTHNLPNVTMVDGPMAVGNFDDGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFIF 94
           SEVKLGKMFAHSFYSNF HNF+F
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFLF 273

[Close]

BLAST of HG10004020 vs. ExPASy TrEMBL
Match: A0A0A0K9J9 (SASA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G058180 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VK+VTHDFF+SPNISFKEEV  ALEAVT +LPNV MVDGPMAVGNFD+GLNEDKGHLNVK
Sbjct: 191 VKLVTHDFFLSPNISFKEEVCNALEAVTHRLPNVTMVDGPMAVGNFDDGLNEDKGHLNVK 250

Query: 71  SEVKLGKMFAHSFYSNFGHNFI 93
           SEVKLGKMFAHSFYSNF HNF+
Sbjct: 251 SEVKLGKMFAHSFYSNFAHNFL 272

[Close]

BLAST of HG10004020 vs. ExPASy TrEMBL
Match: A0A6J1FFF9 (probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111445241 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFFISP+  FKEEVW A EAVTQKLPN+RMVDG +AVGNFDEGLNED+GHLNVK
Sbjct: 183 VKIVTHDFFISPDFEFKEEVWNAQEAVTQKLPNIRMVDGRVAVGNFDEGLNEDRGHLNVK 242

Query: 71  SEVKLGKMFAHSFYSNFGH 90
           SEV LGKMFAHS+YSNF H
Sbjct: 243 SEVNLGKMFAHSYYSNFAH 261

[Close]

BLAST of HG10004020 vs. ExPASy TrEMBL
Match: A0A6J1K1G7 (probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC111489769 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 11  VKIVTHDFFISPNISFKEEVWKALEAVTQKLPNVRMVDGPMAVGNFDEGLNEDKGHLNVK 70
           VKIVTHDFFISP+  FK+EVW A EAVTQKLPNVRMVDG +AVGNFDEGLNED+GHLNVK
Sbjct: 183 VKIVTHDFFISPDFEFKDEVWNAQEAVTQKLPNVRMVDGRVAVGNFDEGLNEDRGHLNVK 242

Query: 71  SEVKLGKMFAHSFYSNFGH 90
           SEV LGKMFAHS+YSNF H
Sbjct: 243 SEVNLGKMFAHSYYSNFAH 261

The following BLAST results are available for this feature:

BLAST of HG10004020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885906.1	5.3e-38	97.56	probable carbohydrate esterase At4g34215 [Benincasa hispida]	[more]
XP_008441649.2	7.1e-35	90.36	PREDICTED: probable carbohydrate esterase At4g34215 [Cucumis melo] >KAA0054896.1...	[more]
XP_004141016.1	7.9e-34	87.80	probable carbohydrate esterase At4g34215 [Cucumis sativus] >XP_031745437.1 proba...	[more]
KAG7016422.1	3.7e-31	86.08	putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023550941.1	3.7e-31	86.08	probable carbohydrate esterase At4g34215 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10004020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGI9	3.5e-35	90.36	Putative carbohydrate esterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B3Y0	3.5e-35	90.36	probable carbohydrate esterase At4g34215 OS=Cucumis melo OX=3656 GN=LOC103485730...	[more]
A0A0A0K9J9	3.8e-34	87.80	SASA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G058180 PE=4 S...	[more]
A0A6J1FFF9	2.3e-31	84.81	probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K1G7	4.0e-31	84.81	probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of HG10004020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005181	Sialate O-acetylesterase domain	PFAM	PF03629	SASA	coord: 26..84 e-value: 7.5E-6 score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004020.1	HG10004020.1	mRNA