HG10004014 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004014
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 12785557 .. 12785841 (+)
RNA-Seq Expression	HG10004014
Synteny	HG10004014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCTCTTCTTCTTCTTCAGTTGCTTCACTTCTCTTTGCTTTTTTGCTGATATTGTTTTTATCTCTGATTACTTTGCCCTCATCGACCACCGGAAACTCCATCGATGCTTCTCCATCACCGCCACCATCGAAAAAGCTACAAAGTCGTGTTCCACTTCAACCTCATGTACATTACTCACAAGCCATTTTGCAGCTACCATTAGAGAAAGGTAGGTTGCCTGCAAATGCTCCATGGCCAATGGAGTTCGTCCTTCCGTCGCCTCCACCTCCTTTTCGCTAA

mRNA sequence

ATGAAGTCCTCTTCTTCTTCTTCAGTTGCTTCACTTCTCTTTGCTTTTTTGCTGATATTGTTTTTATCTCTGATTACTTTGCCCTCATCGACCACCGGAAACTCCATCGATGCTTCTCCATCACCGCCACCATCGAAAAAGCTACAAAGTCGTGTTCCACTTCAACCTCATGTACATTACTCACAAGCCATTTTGCAGCTACCATTAGAGAAAGGTAGGTTGCCTGCAAATGCTCCATGGCCAATGGAGTTCGTCCTTCCGTCGCCTCCACCTCCTTTTCGCTAA

Coding sequence (CDS)

ATGAAGTCCTCTTCTTCTTCTTCAGTTGCTTCACTTCTCTTTGCTTTTTTGCTGATATTGTTTTTATCTCTGATTACTTTGCCCTCATCGACCACCGGAAACTCCATCGATGCTTCTCCATCACCGCCACCATCGAAAAAGCTACAAAGTCGTGTTCCACTTCAACCTCATGTACATTACTCACAAGCCATTTTGCAGCTACCATTAGAGAAAGGTAGGTTGCCTGCAAATGCTCCATGGCCAATGGAGTTCGTCCTTCCGTCGCCTCCACCTCCTTTTCGCTAA

Protein sequence

MKSSSSSSVASLLFAFLLILFLSLITLPSSTTGNSIDASPSPPPSKKLQSRVPLQPHVHYSQAILQLPLEKGRLPANAPWPMEFVLPSPPPPFR

Homology

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BLAST of HG10004014 vs. NCBI nr
Match: KAG6602175.1 (hypothetical protein SDJN03_07408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-14
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 5   SSSSVASLLFAFLLILFLSLITLPSSTTGNSIDASPSPPPSKKLQSRVPLQPHVHYSQAI 64
           SSSS+AS+LFA LL+L LSL+TLPS+ T NS DASPSPPPS++    +    H+  S+A+
Sbjct: 4   SSSSMASILFASLLLLSLSLVTLPSTATANSDDASPSPPPSQRPHGHLRSHFHIRSSRAM 63

Query: 65  LQ-LPL---------EKGRLPANAPWPMEFVLPSPPPPFR 95
            Q LP+         E  R+  NAPWPM  VLPSPPPPFR
Sbjct: 64  KQFLPIFKRVAKKQEELDRVFVNAPWPMVVVLPSPPPPFR 103

The following BLAST results are available for this feature:

BLAST of HG10004014 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602175.1	4.1e-14	55.00	hypothetical protein SDJN03_07408, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10004014 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004014 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004014 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004014.1	HG10004014.1	mRNA