HG10003962 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003962
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BEST Arabidopsis thaliana protein match is: embryo defective 2170 .
Location	Chr08: 12273502 .. 12274278 (-)
RNA-Seq Expression	HG10003962
Synteny	HG10003962

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGTAA

mRNA sequence

ATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGTAA

Coding sequence (CDS)

ATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGTAA

Protein sequence

MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSR

Homology

[Close]

BLAST of HG10003962 vs. NCBI nr
Match: XP_008441584.1 (PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 1.9e-114
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

[Close]

BLAST of HG10003962 vs. NCBI nr
Match: TYK23785.1 (uncharacterized protein E5676_scaffold1607G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 422.9 bits (1086), Expect = 1.9e-114
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

[Close]

BLAST of HG10003962 vs. NCBI nr
Match: XP_038885358.1 (uncharacterized protein LOC120075766 [Benincasa hispida])

HSP 1 Score: 414.8 bits (1065), Expect = 5.3e-112
Identity = 225/260 (86.54%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DIRTKFPRK  H PD      ++YYKSP+ D   EDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDIRTKFPRKSAHTPD------STYYKSPDQD---EDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLW SNSRTSPQFHRPRNRSLSPTSR QAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWGSNSRTSPQFHRPRNRSLSPTSRIQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGD--ATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYL 180
           VEHHLTNSKRQQDGD  A SL+RDDSSSETSFRRD SKTRSETR LVTRSRSVD+GGFYL
Sbjct: 121 VEHHLTNSKRQQDGDCAAASLARDDSSSETSFRRDSSKTRSETRGLVTRSRSVDSGGFYL 180

Query: 181 KMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISG 240
           KMF PLPFGQVSAKKK+NLRTDSGLSG SRVSPKPPPV++DWWRKRS+VAGGENEGSISG
Sbjct: 181 KMFLPLPFGQVSAKKKTNLRTDSGLSGGSRVSPKPPPVEKDWWRKRSAVAGGENEGSISG 240

Query: 241 GSMTSSGSSNSTSSERSNSR 259
           GSM SSGSSNSTSSERSNSR
Sbjct: 241 GSMMSSGSSNSTSSERSNSR 251

[Close]

BLAST of HG10003962 vs. NCBI nr
Match: XP_004144253.1 (uncharacterized protein LOC101219576 [Cucumis sativus] >KGN47505.1 hypothetical protein Csa_019018 [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 3.4e-111
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TK P KP            SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKLPPKP-----------DSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQF-HRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120
           V SPTLWASNSRT+PQF HR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD
Sbjct: 61  VSSPTLWASNSRTTPQFHHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120

Query: 121 LVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLK 180
           LVEHHLTNSKRQQDGD  SL+RDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLK
Sbjct: 121 LVEHHLTNSKRQQDGDVASLTRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLK 180

Query: 181 MFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGG 240
           MFFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGG
Sbjct: 181 MFFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGG 240

Query: 241 SMTSSGSSNSTSSERSNSR 259
           SMTSSGSSNSTSSERSNSR
Sbjct: 241 SMTSSGSSNSTSSERSNSR 246

[Close]

BLAST of HG10003962 vs. NCBI nr
Match: KAG6578929.1 (TOM1-like protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-88
Identity = 189/223 (84.75%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQSESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNS 258
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSERS +
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSERSRN 214

[Close]

BLAST of HG10003962 vs. ExPASy TrEMBL
Match: A0A5D3DJL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001120 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.4e-115
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

[Close]

BLAST of HG10003962 vs. ExPASy TrEMBL
Match: A0A1S3B3A7 (uncharacterized protein LOC103485667 OS=Cucumis melo OX=3656 GN=LOC103485667 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.4e-115
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

[Close]

BLAST of HG10003962 vs. ExPASy TrEMBL
Match: A0A0A0KCW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G349820 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.7e-111
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TK P KP            SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKLPPKP-----------DSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQF-HRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120
           V SPTLWASNSRT+PQF HR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD
Sbjct: 61  VSSPTLWASNSRTTPQFHHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120

Query: 121 LVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLK 180
           LVEHHLTNSKRQQDGD  SL+RDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLK
Sbjct: 121 LVEHHLTNSKRQQDGDVASLTRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLK 180

Query: 181 MFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGG 240
           MFFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGG
Sbjct: 181 MFFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGG 240

Query: 241 SMTSSGSSNSTSSERSNSR 259
           SMTSSGSSNSTSSERSNSR
Sbjct: 241 SMTSSGSSNSTSSERSNSR 246

[Close]

BLAST of HG10003962 vs. ExPASy TrEMBL
Match: A0A6J1FJY2 (uncharacterized protein LOC111444710 OS=Cucurbita moschata OX=3662 GN=LOC111444710 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.8e-89
Identity = 189/223 (84.75%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQSESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNS 258
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSERS +
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSERSRN 214

[Close]

BLAST of HG10003962 vs. ExPASy TrEMBL
Match: A0A6J1K1H6 (uncharacterized protein LOC111489776 OS=Cucurbita maxima OX=3661 GN=LOC111489776 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 3.4e-88
Identity = 188/223 (84.30%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQ ESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQLESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNS 258
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSERS +
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSERSRN 214

[Close]

BLAST of HG10003962 vs. TAIR 10
Match: AT1G21390.1 (embryo defective 2170 )

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-22
Identity = 86/215 (40.00%), Postives = 113/215 (52.56%), Query Frame = 0


Query: 50  AVDDDSQSESGVCSPTLW-ASNSRTSPQFHRPRNR-SLSPTSRTQAIARGQQELMEMVRN 109
           ++ +D  S+SGVCSPTLW  S  ++ P FHRP +  SLSP S+ QAIARGQ+ELMEMV  
Sbjct: 18  SIPNDDHSDSGVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSK 77

Query: 110 MPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTR 169
           MPES YELSLKDLVE  +     ++  D      +  S          KT+S+ R    R
Sbjct: 78  MPESCYELSLKDLVEVKVNQENERKVFDELPKRANRQSKVV------RKTKSDKRVDPNR 137

Query: 170 SRSVDNGGFYLKMFFPLPFGQV--SAKKKSNLRTDSGLSGSSRVSPKPPPV---DRDWWR 229
           S   +N GF LK+ F +  G +  + KKK   + D     S R S     V   D++WW 
Sbjct: 138 SGGGNNSGFLLKIMFLVSLGAMKDTTKKKKKKKKDEACKVSPRPSISEETVKVEDKEWWN 197

Query: 230 KRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNS 258
           +            +S  S   SGSS+S +S RS S
Sbjct: 198 R------------MSESSTKRSGSSSSNNSIRSRS 214

[Close]

BLAST of HG10003962 vs. TAIR 10
Match: AT1G76980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-21
Identity = 88/228 (38.60%), Postives = 118/228 (51.75%), Query Frame = 0


Query: 54  DSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSY 113
           D  S+SGVCSP LW ++   SP       ++LSP ++ Q IARGQ+ELM+MV  MPES Y
Sbjct: 22  DDHSDSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCY 81

Query: 114 ELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDN 173
           ELSLKDLVE    N++ ++  D      +    E   R+   KT+S+      R+  V+N
Sbjct: 82  ELSLKDLVE---VNTEEEKVFD------EMPQREKKPRKVVRKTKSDKWVDPIRNGGVNN 141

Query: 174 GGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRV-------SPKP-------PPVDRD 233
            GF LK+ FP+  G   AKKK+N + D+    SS         SP+P          D+D
Sbjct: 142 SGFLLKLVFPVSLG---AKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKD 201

Query: 234 WW-------RKRSSVAGGENEGS--ISGGSMTSSGSSNSTSSERSNSR 259
           WW       R+  SV    N GS   SGGS + S S  S +S R  +R
Sbjct: 202 WWKDGLSESRRSQSVVSRINSGSSKSSGGSSSRSNSDRSRNSLRDENR 237

[Close]

BLAST of HG10003962 vs. TAIR 10
Match: AT1G76980.1 (BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-20
Identity = 86/225 (38.22%), Postives = 119/225 (52.89%), Query Frame = 0


Query: 54  DSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSY 113
           D  S+SGVCSP LW ++   SP       ++LSP ++ Q IARGQ+ELM+MV  MPES Y
Sbjct: 22  DDHSDSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCY 81

Query: 114 ELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDN 173
           ELSLKDLVE    N++ ++  D      +    E   R+   KT+S+      R+  V+N
Sbjct: 82  ELSLKDLVE---VNTEEEKVFD------EMPQREKKPRKVVRKTKSDKWVDPIRNGGVNN 141

Query: 174 GGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRV-------SPKP-------PPVDRD 233
            GF LK+ FP+  G   AKKK+N + D+    SS         SP+P          D+D
Sbjct: 142 SGFLLKLVFPVSLG---AKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKD 201

Query: 234 WW-------RKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNS 258
           WW       R+  SV    N    SG S +S GSS+ ++S+RS +
Sbjct: 202 WWKDGLSESRRSQSVVSRIN----SGSSKSSGGSSSRSNSDRSRN 230

The following BLAST results are available for this feature:

BLAST of HG10003962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441584.1	1.9e-114	88.37	PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo]	[more]
TYK23785.1	1.9e-114	88.37	uncharacterized protein E5676_scaffold1607G001120 [Cucumis melo var. makuwa]	[more]
XP_038885358.1	5.3e-112	86.54	uncharacterized protein LOC120075766 [Benincasa hispida]	[more]
XP_004144253.1	3.4e-111	86.87	uncharacterized protein LOC101219576 [Cucumis sativus] >KGN47505.1 hypothetical ...	[more]
KAG6578929.1	1.4e-88	84.75	TOM1-like protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10003962 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJL8	9.4e-115	88.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3A7	9.4e-115	88.37	uncharacterized protein LOC103485667 OS=Cucumis melo OX=3656 GN=LOC103485667 PE=...	[more]
A0A0A0KCW4	1.7e-111	86.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G349820 PE=4 SV=1	[more]
A0A6J1FJY2	6.8e-89	84.75	uncharacterized protein LOC111444710 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A6J1K1H6	3.4e-88	84.30	uncharacterized protein LOC111489776 OS=Cucurbita maxima OX=3661 GN=LOC111489776...	[more]

BLAST of HG10003962 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21390.1	1.4e-22	40.00	embryo defective 2170	[more]
AT1G76980.2	6.0e-21	38.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G76980.1	1.0e-20	38.22	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G2139...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..258
None	No IPR available	PANTHER	PTHR34193:SF1	OS11G0199801 PROTEIN	coord: 43..256
None	No IPR available	PANTHER	PTHR34193	OS11G0199801 PROTEIN	coord: 43..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003962.1	HG10003962.1	mRNA