HG10003910 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003910
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 11511677 .. 11511985 (+)
RNA-Seq ExpressionHG10003910
SyntenyHG10003910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCGAGACGGTCAAGTGCGGGAGTAGGAGGGCTCGGTGTACAACTAGCAATTGTCACCGGAGAAACCGAAACCTTCGACGGAGGCCTCGAAGACGTCGTGGAAGAAGGAGTCGTAGGTCGACCATTCGGCCTGGGCGCCGGTGAAACCGCCGGAGACTTCCGTGAGCGGAATGGCGAGATGTTAGAAGGTCTTTGGGACCTAGAAATGCTCGTCGAGGACGCCATTTACAGAACAACAACAATGAAACAACAAGAAGAAGAAGAAATCGAGCACAGAAATATGGGAAATGCAAACGCTGATTGA

mRNA sequence

ATGACATCGAGACGGTCAAGTGCGGGAGTAGGAGGGCTCGGTGTACAACTAGCAATTGTCACCGGAGAAACCGAAACCTTCGACGGAGGCCTCGAAGACGTCGTGGAAGAAGGAGTCGTAGGTCGACCATTCGGCCTGGGCGCCGGTGAAACCGCCGGAGACTTCCGTGAGCGGAATGGCGAGATGTTAGAAGGTCTTTGGGACCTAGAAATGCTCGTCGAGGACGCCATTTACAGAACAACAACAATGAAACAACAAGAAGAAGAAGAAATCGAGCACAGAAATATGGGAAATGCAAACGCTGATTGA

Coding sequence (CDS)

ATGACATCGAGACGGTCAAGTGCGGGAGTAGGAGGGCTCGGTGTACAACTAGCAATTGTCACCGGAGAAACCGAAACCTTCGACGGAGGCCTCGAAGACGTCGTGGAAGAAGGAGTCGTAGGTCGACCATTCGGCCTGGGCGCCGGTGAAACCGCCGGAGACTTCCGTGAGCGGAATGGCGAGATGTTAGAAGGTCTTTGGGACCTAGAAATGCTCGTCGAGGACGCCATTTACAGAACAACAACAATGAAACAACAAGAAGAAGAAGAAATCGAGCACAGAAATATGGGAAATGCAAACGCTGATTGA

Protein sequence

MTSRRSSAGVGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNGEMLEGLWDLEMLVEDAIYRTTTMKQQEEEEIEHRNMGNANAD
Homology
BLAST of HG10003910 vs. NCBI nr
Match: KAA0049654.1 (hypothetical protein E6C27_scaffold163G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.9e-21
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 4   RRSSAGVGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNGEML 63
           +RSS GV GLG+QLA+V GE ETFDGGLEDVVEEGVVGRPFGL A +  GDFRE+NGEM+
Sbjct: 82  KRSSGGVEGLGLQLAVVIGEIETFDGGLEDVVEEGVVGRPFGLEADDNPGDFREQNGEMV 141

Query: 64  EGLWDLEMLVEDAI 78
           +G  DLE LVEDAI
Sbjct: 142 KGFGDLERLVEDAI 155

BLAST of HG10003910 vs. NCBI nr
Match: PON94613.1 (hypothetical protein TorRG33x02_096480 [Trema orientale])

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-10
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 10 VGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNGEML----EG 69
          +GG+ + LA V GE ++ DGGL+DVVEEGVVGRP GL  G   GDFR+R GEM+    E 
Sbjct: 4  IGGV-LGLAEVVGEADSRDGGLDDVVEEGVVGRPAGLDDGAGDGDFRDRKGEMVEVVEED 63

Query: 70 LWDLEMLVEDAIYRTTTMKQQEE 89
          LWDLE++VE  + R   ++++ E
Sbjct: 64 LWDLEVVVE--LVRNMVLERERE 83

BLAST of HG10003910 vs. NCBI nr
Match: PON73208.1 (hypothetical protein PanWU01x14_060490, partial [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MTSRRSSAGVGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNG 60
          + S RS   +GG+ + LA V GE ++ DGGL+DVVEEGVVGRP  L  G   GDFR+R G
Sbjct: 14 LASGRSMGWIGGV-LGLAEVVGEADSRDGGLDDVVEEGVVGRPAFLDDGAGDGDFRDRKG 73

Query: 61 EML----EGLWDLEMLVE 75
          EM+    E LWDLE++ E
Sbjct: 74 EMVEVVEEDLWDLEVVAE 90

BLAST of HG10003910 vs. ExPASy TrEMBL
Match: A0A5A7U327 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G001230 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.4e-21
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 4   RRSSAGVGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNGEML 63
           +RSS GV GLG+QLA+V GE ETFDGGLEDVVEEGVVGRPFGL A +  GDFRE+NGEM+
Sbjct: 82  KRSSGGVEGLGLQLAVVIGEIETFDGGLEDVVEEGVVGRPFGLEADDNPGDFREQNGEMV 141

Query: 64  EGLWDLEMLVEDAI 78
           +G  DLE LVEDAI
Sbjct: 142 KGFGDLERLVEDAI 155

BLAST of HG10003910 vs. ExPASy TrEMBL
Match: A0A2P5FA12 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_096480 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-10
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 10 VGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNGEML----EG 69
          +GG+ + LA V GE ++ DGGL+DVVEEGVVGRP GL  G   GDFR+R GEM+    E 
Sbjct: 4  IGGV-LGLAEVVGEADSRDGGLDDVVEEGVVGRPAGLDDGAGDGDFRDRKGEMVEVVEED 63

Query: 70 LWDLEMLVEDAIYRTTTMKQQEE 89
          LWDLE++VE  + R   ++++ E
Sbjct: 64 LWDLEVVVE--LVRNMVLERERE 83

BLAST of HG10003910 vs. ExPASy TrEMBL
Match: A0A2P5DIT1 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060490 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MTSRRSSAGVGGLGVQLAIVTGETETFDGGLEDVVEEGVVGRPFGLGAGETAGDFRERNG 60
          + S RS   +GG+ + LA V GE ++ DGGL+DVVEEGVVGRP  L  G   GDFR+R G
Sbjct: 14 LASGRSMGWIGGV-LGLAEVVGEADSRDGGLDDVVEEGVVGRPAFLDDGAGDGDFRDRKG 73

Query: 61 EML----EGLWDLEMLVE 75
          EM+    E LWDLE++ E
Sbjct: 74 EMVEVVEEDLWDLEVVAE 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049654.14.9e-2175.68hypothetical protein E6C27_scaffold163G001230 [Cucumis melo var. makuwa][more]
PON94613.16.7e-1051.81hypothetical protein TorRG33x02_096480 [Trema orientale][more]
PON73208.12.5e-0953.85hypothetical protein PanWU01x14_060490, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3272.4e-2175.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2P5FA123.2e-1051.81Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_096480 PE=4 SV... [more]
A0A2P5DIT11.2e-0953.85Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003910.1HG10003910.1mRNA