HG10003898 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003898
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Chr08: 11342414 .. 11343094 (-)
RNA-Seq Expression	HG10003898
Synteny	HG10003898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATTACCAATTCTCACTTGCTTCCCTGTGACTGTTTCCTTTTTCACCTTCACTTTCGCCACGTTCTCCAGTCAAATCACCATCAAGATTTTCATACACTCTTAAATTCCTCTCTATCTTCCTTCTTGATACCTTGCGACGTCTTTTTCGCTACTGGCTCCAGTATCCTGATCGCCGTTTTCTCTGGCACCGGCGTCGCGCAAGACTTCTTGGACACGGCGATACCGGACGTTCTGTCTGTCGCGGCTGATATCGCATGCAATCCTCTTAATGCTGGCCATCGGATACTTCCGTTGGCGGTGTCCGTTTTAGTCGTTTCGCCGTACAATGAAAGCGAGGAAATTGGGCGAGTTTTGCGGGAATCATCGGCGCAAGCGTTTAAAACGTTGCCGGCTAGTGAGATGGCAATCGAAGGTCTGAAGAACGTGGAGATTGATGTCGGCGGAGAGTTGTTGAACGGAGAATGCAGAATATGTTTGGATGAACTGATGAACGGAATGGAAGTTACGCAATTGCCGTGCGCTCATGTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCTTTGTGCCGCTATGCAATGCCACTGAGCTAA

mRNA sequence

ATGGCCATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATTACCAATTCTCACTTGCTTCCCTGTGACTGTTTCCTTTTTCACCTTCACTTTCGCCACGTTCTCCAGTCAAATCACCATCAAGATTTTCATACACTCTTAAATTCCTCTCTATCTTCCTTCTTGATACCTTGCGACGTCTTTTTCGCTACTGGCTCCAGTATCCTGATCGCCGTTTTCTCTGGCACCGGCGTCGCGCAAGACTTCTTGGACACGGCGATACCGGACGTTCTGTCTGTCGCGGCTGATATCGCATGCAATCCTCTTAATGCTGGCCATCGGATACTTCCGTTGGCGGTGTCCGTTTTAGTCGTTTCGCCGTACAATGAAAGCGAGGAAATTGGGCGAGTTTTGCGGGAATCATCGGCGCAAGCGTTTAAAACGTTGCCGGCTAGTGAGATGGCAATCGAAGGTCTGAAGAACGTGGAGATTGATGTCGGCGGAGAGTTGTTGAACGGAGAATGCAGAATATGTTTGGATGAACTGATGAACGGAATGGAAGTTACGCAATTGCCGTGCGCTCATGTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCTTTGTGCCGCTATGCAATGCCACTGAGCTAA

Coding sequence (CDS)

ATGGCCATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATTACCAATTCTCACTTGCTTCCCTGTGACTGTTTCCTTTTTCACCTTCACTTTCGCCACGTTCTCCAGTCAAATCACCATCAAGATTTTCATACACTCTTAAATTCCTCTCTATCTTCCTTCTTGATACCTTGCGACGTCTTTTTCGCTACTGGCTCCAGTATCCTGATCGCCGTTTTCTCTGGCACCGGCGTCGCGCAAGACTTCTTGGACACGGCGATACCGGACGTTCTGTCTGTCGCGGCTGATATCGCATGCAATCCTCTTAATGCTGGCCATCGGATACTTCCGTTGGCGGTGTCCGTTTTAGTCGTTTCGCCGTACAATGAAAGCGAGGAAATTGGGCGAGTTTTGCGGGAATCATCGGCGCAAGCGTTTAAAACGTTGCCGGCTAGTGAGATGGCAATCGAAGGTCTGAAGAACGTGGAGATTGATGTCGGCGGAGAGTTGTTGAACGGAGAATGCAGAATATGTTTGGATGAACTGATGAACGGAATGGAAGTTACGCAATTGCCGTGCGCTCATGTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCTTTGTGCCGCTATGCAATGCCACTGAGCTAA

Protein sequence

MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNSSLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRILPLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS

Homology

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BLAST of HG10003898 vs. NCBI nr
Match: XP_004150446.1 (E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical protein Csa_018280 [Cucumis sativus])

HSP 1 Score: 431.4 bits (1108), Expect = 4.8e-117
Identity = 209/226 (92.48%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTI+NSHLLPC+CFLFHLHFRH+LQSNH Q FH LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCDVFFAT SSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAG  IL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVLVVSPYNE +EIGRVLRESS QAFKTLPASEMAIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of HG10003898 vs. NCBI nr
Match: XP_038885922.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 428.3 bits (1100), Expect = 4.0e-116
Identity = 208/226 (92.04%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQP+EGE DLNVT++NSHLLPCDCFLFHLHFRHVLQSNH Q+FH LLNS
Sbjct: 1   MAMDTLYDYHIWQPQEGEGDLNVTMSNSHLLPCDCFLFHLHFRHVLQSNHPQEFHLLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPC+VF ATGSSILIAVFS TGVAQDFLDTA+PDVLSVAADIACNPLNAG RIL
Sbjct: 61  SLSSFLIPCNVFLATGSSILIAVFSDTGVAQDFLDTAVPDVLSVAADIACNPLNAGRRIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVLVVSPYNE EEIGRVLRESSAQ FKTLPASE AIEGLKNV+IDVGGELL GECR
Sbjct: 121 PLAVSVLVVSPYNEREEIGRVLRESSAQPFKTLPASETAIEGLKNVDIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of HG10003898 vs. NCBI nr
Match: XP_008466716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0059921.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK24868.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 2.5e-113
Identity = 202/226 (89.38%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTI+NSHLLPC+CFLFHLHFRH+LQSNH Q  H LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSS+LIPCDVFFAT SSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAG  IL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PL VSVLVVSPYNE +EIG+VLRESS QAFKTLPASEMAIE LKNVEI VGGELL GECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+T+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. NCBI nr
Match: XP_022990569.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima])

HSP 1 Score: 411.0 bits (1055), Expect = 6.7e-111
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTI+NSHLLPCDCFLFHLHFRHVLQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCD FFA+G SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAG R+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVL VSPYNE EEIGRVLRESS QAFKT PASE AIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. NCBI nr
Match: XP_023554199.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.6 bits (1054), Expect = 8.7e-111
Identity = 200/226 (88.50%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTI+NSHLLPCDCFLFHLHFRHVLQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDINVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCD FFA+G SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAG R+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVL VSPYNE EEIGRVLRESS QAFKT PASE AIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of HG10003898 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-15
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 93  FLDTAIPDVLSVAADIAC----NPLNAGHRILPLAVSVLVVSPYNESEEIGRVLRESSAQ 152
           F+   + D+ S  A I      NP + G R LP  +    + P    E++ + L E+   
Sbjct: 136 FIQNHLNDLRSSGAQIEFVIQNNPSDQGFR-LPANIGDYFIGP--GLEQLIQQLAENDPN 195

Query: 153 AFKTLPASEMAIEGLKNVEIDVGGELLNGE---CRICLDELMNGMEVTQLPCAHVYHRDC 212
            + T PAS+ AIE L  V I      LN E   C +C+D+   G E  Q+PC H+YH+DC
Sbjct: 196 RYGTPPASKSAIEALPLVNITKSN--LNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDC 255

Query: 213 IVKWLETSHLCPLCRYAMP 225
           ++ WLE  + CP+CR+ +P
Sbjct: 256 LLPWLELHNSCPVCRHELP 269

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BLAST of HG10003898 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 35/91 (38.46%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 136 EEIGRVLRESSAQAFKTLPASEMAIEGLKNVEI--DVGGELLNGECRICLDELMNGMEVT 195
           E++ + L E+    + T PAS+ AI+ L  V++  D+    +N +C +C+DE  +G +V 
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMN-QCAVCMDEFEDGSDVK 231

Query: 196 QLPCAHVYHRDCIVKWLETSHLCPLCRYAMP 225
           Q+PC HV+H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 QMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of HG10003898 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 154 PASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKWLETS 213
           PAS+ AIE L  VEI          C +C +    G+E  ++PC H++H DCIV WL   
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 214 HLCPLCRYAMP 225
           + CP+CR+ +P
Sbjct: 250 NSCPVCRFELP 260

[Close]

BLAST of HG10003898 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 142 LRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVY 201
           L ES      T PA + A+E L  V+I+   E+++  C +CLD+L  G +  Q+PC H +
Sbjct: 167 LAESDPSRNGTPPAKKEAVEALPTVKIE---EVVS--CSVCLDDLEVGSQAKQMPCEHKF 226

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H  CI+ WLE    CP+CR+ +P
Sbjct: 227 HSSCILPWLELHSSCPVCRFELP 244

[Close]

BLAST of HG10003898 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 115 AGHRILPLAVSVLVVSPYNES--EEIGRVLRESSAQAF---KTLPASEMAIEGLKNVEID 174
           +G R LP +VS +++    E   E++ ++  E+SA         PAS+ AIE L  VEI 
Sbjct: 132 SGLRPLPDSVSEILMGSGFERLLEQLSQI--EASATGIGRSGNPPASKSAIESLPRVEIS 191

Query: 175 ---VGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMP 225
              +G E     C +C +      E  ++PC H++H DCIV WL   + CP+CR+ +P
Sbjct: 192 DCHIGSE---ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELP 244

[Close]

BLAST of HG10003898 vs. ExPASy TrEMBL
Match: A0A0A0KDU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.3e-117
Identity = 209/226 (92.48%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTI+NSHLLPC+CFLFHLHFRH+LQSNH Q FH LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCDVFFAT SSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAG  IL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVLVVSPYNE +EIGRVLRESS QAFKTLPASEMAIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. ExPASy TrEMBL
Match: A0A5A7V2F0 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001370 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 202/226 (89.38%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTI+NSHLLPC+CFLFHLHFRH+LQSNH Q  H LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSS+LIPCDVFFAT SSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAG  IL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PL VSVLVVSPYNE +EIG+VLRESS QAFKTLPASEMAIE LKNVEI VGGELL GECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+T+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. ExPASy TrEMBL
Match: A0A1S3CS28 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 202/226 (89.38%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTI+NSHLLPC+CFLFHLHFRH+LQSNH Q  H LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSS+LIPCDVFFAT SSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAG  IL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PL VSVLVVSPYNE +EIG+VLRESS QAFKTLPASEMAIE LKNVEI VGGELL GECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+T+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. ExPASy TrEMBL
Match: A0A6J1JSE1 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111487409 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.2e-111
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTI+NSHLLPCDCFLFHLHFRHVLQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCD FFA+G SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAG R+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVL VSPYNE EEIGRVLRESS QAFKT PASE AIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. ExPASy TrEMBL
Match: A0A6J1HJY0 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC111463602 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.1e-110
Identity = 199/226 (88.05%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTITNSHLLPCDCFLFHLHFRHVLQSNHHQDFHTLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTI+NSHLLPCDCFLFHLHFRHVLQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATGSSILIAVFSGTGVAQDFLDTAIPDVLSVAADIACNPLNAGHRIL 120
           SLSSFLIPCD FFA+G SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAG R+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNESEEIGRVLRESSAQAFKTLPASEMAIEGLKNVEIDVGGELLNGECR 180
           PLAVSVL VSPYNE EEIGRVLRESS Q FKT PASE AIEGLK VEIDVGGELL GECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTQLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVT+LPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of HG10003898 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-16
Identity = 35/91 (38.46%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 136 EEIGRVLRESSAQAFKTLPASEMAIEGLKNVEI--DVGGELLNGECRICLDELMNGMEVT 195
           E++ + L E+    + T PAS+ AI+ L  V++  D+    +N +C +C+DE  +G +V 
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMN-QCAVCMDEFEDGSDVK 231

Query: 196 QLPCAHVYHRDCIVKWLETSHLCPLCRYAMP 225
           Q+PC HV+H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 QMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of HG10003898 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 154 PASEMAIEGLKNVEIDVGGELLN--GECRICLDELMNGMEVTQLPCAHVYHRDCIVKWLE 213
           PASE  I  L +V+I     L N   +C +C++E + G + T+LPC H+YH+DCIV WL 
Sbjct: 198 PASEPTINSLPSVKI-TPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLR 257

Query: 214 TSHLCPLCRYAMPL 226
            ++ CP+CR  +PL
Sbjct: 258 LNNSCPICRRDLPL 270

[Close]

BLAST of HG10003898 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME  ++PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]

BLAST of HG10003898 vs. TAIR 10
Match: AT3G13430.2 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME  ++PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]

BLAST of HG10003898 vs. TAIR 10
Match: AT3G13430.3 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKNVEIDVGGELLNGECRICLDELMNGMEVTQLPCAHVYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME  ++PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

The following BLAST results are available for this feature:

BLAST of HG10003898 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150446.1	4.8e-117	92.48	E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical pro...	[more]
XP_038885922.1	4.0e-116	92.04	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_008466716.1	2.5e-113	89.38	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0059921.1 E...	[more]
XP_022990569.1	6.7e-111	88.50	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 pr...	[more]
XP_023554199.1	8.7e-111	88.50	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10003898 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH30	2.4e-15	35.25	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	1.2e-14	38.46	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SNB6	2.1e-11	40.85	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q6AVN2	2.8e-11	39.76	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
Q940T5	1.4e-10	34.75	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]

BLAST of HG10003898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDU3	2.3e-117	92.48	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 P...	[more]
A0A5A7V2F0	1.2e-113	89.38	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CS28	1.2e-113	89.38	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 P...	[more]
A0A6J1JSE1	3.2e-111	88.50	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HJY0	2.1e-110	88.05	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of HG10003898 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19950.1	8.6e-16	38.46	RING/U-box superfamily protein	[more]
AT1G60360.1	1.1e-13	44.59	RING/U-box superfamily protein	[more]
AT3G13430.1	2.4e-13	42.67	RING/U-box superfamily protein	[more]
AT3G13430.2	2.4e-13	42.67	RING/U-box superfamily protein	[more]
AT3G13430.3	2.4e-13	42.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 178..220 e-value: 0.0016 score: 14.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 179..219 e-value: 4.9E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 178..220 e-value: 9.8E-14 score: 51.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 179..220 score: 13.049892
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 141..225 e-value: 5.5E-20 score: 72.8
None	No IPR available	PANTHER	PTHR15710:SF120	F6A14.12 PROTEIN-RELATED	coord: 93..224
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 93..224
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 178..220 e-value: 2.04296E-15 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 178..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003898.1	HG10003898.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding