HG10003891 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003891
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosystem II 22 kDa protein, chloroplastic
Location	Chr08: 11288140 .. 11290579 (-)
RNA-Seq Expression	HG10003891
Synteny	HG10003891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCAAACCATGCTTTTCACTTCTGGTGTGTGCGTCGGCCATGGCGTGGGTGTTAAGAGAGAATTAAGCCTTAGACCTAACGCTCAATTTACTCGTCTCTTTTTTAATCCTCTGCCTTCCAACTCTGTTTCTTTGCCGGCGCGTGGTTTCACGACTCTTGCTATCTTTAAATCCAGAACTAAAGTGCCGCCCAAGAAGGTAAATTAATTCATTATTTTGTGAATAATTGTTTTTTTTTTAGAGGAATTAAATTGATGGAATTCCTTTTTAGGTTGCGAAGCCGAAGCAGAAGGTTGAAGACGGAGTTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCTATGATCGGCTTTGCTGTGAGTTCTCTTTTTTGAGAAAATTTATGGATCTATGTTTATAATTATCGAATTTTAAATTACGGAACTATGACTGTCTCATGATTTATCTTATAGATTCAGTGTCTACTACATGTTTTTATAGATGGAGTAATGTTGATTTGTTTAGGTCTCACCTATATATATATTTTTAATTAATTTTTATCTTAAAAAATTAAGTTGAATTTTGAAGAAAAAAAAATAGTTTTCATAAATTTGTTTTTGTTTGAGAATTTGACTAAAAATTGATTTTTTTTTTATTTTTTTTTTTTTTGTAATAAAAAATGTGAGAATCAATTTAGTATGAAATTTAAGAAAAAACAAGTATAAATTTAGAAAATGGAAAATTAAAATCAAAATGGTTACTGAACTTCTAATGGTTTCTATGTCACACCCAACATTATTGTTTAATAGTTTTGTTGAATAGTTATTATAATTAATTATCGAGAAGGTATAAAATTATGTTTTAAAATTGGTAATTATTTTAAATGATAAAACTGTTAAAAATATTTTCAAATATAGCAAGATGTCACTGACACTAATAGACATCTATCAGTATCTATCACTGTCTATCACTGATAAAAAGAGACATTTTGCTATATTTGTAAATAAAAGTGACATTTTATTACATTTGTAAATATTTTGACTCATTTTGCTATATTTGAAAACAACTCTTTTAAAATCTTTACTAGTTGTAAGCGCACAAAGATTGTCAAAATGAACTTAGCTCAATCATAATTGACTTTACTTTCCTCTTAAAAGTTGAAAGTTCGATCTCTCATCTCCCCTATTGTATTAAAAAAAAATCACTCACTCAAATTAGTGGAGCATAGTTCATGTCTATCCTTAGCTATTTAGTTCATGTATATCCTTAGCTATAATTAAATAGATAAAGCTATTGATAATCGTCTAAAAAGTCAGTTTGATTTTCCATTTCACCTAAACTATAAAAGAGAAATAAATTTATAGATTGTTAAATTAATTTTTATATGAAAGTTAAGGTTTGTGTTTAGTTGGTTTAAAATTTTTTAGAAATGTCTAAATAAATTCTTAAATTTTTATAGTTAATAGGCTTTGATATATTCAAATTCTTTAAAATTTAATTAATCTATTAGATATAAAATATTTTAAAACAAATAAGAACTATAAATTTCAAATTTGGTATCTCAGTAAATATATTAAGACATAAAATTAAAAACAATAATTTATTAACCATAAAATTAAAAGTTTTAAAGTTGTAAAATACTTATTTTGAAATGTATTGGACATAAAATTAAGCATTTAAGAATTTAAAAGTTTAGAAATTAAATATACACCGATTAACATATTATAAGGATTGACACAAATTTTCTTTTAACTTGGGCCAAATTCGAACTAAAAAATTAACGAAAATATGAGGAAGAAAAAGTTTATGCAAAAATCATTACCAACCTATAAAATTTGCAGGCATCTATATTGGGAGAAGCGATCACCGGAAAGGGAATTCTGGCACAACTGAACTTGGAAACTGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGCTTGGAACGCGCCGTTATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTAAATTACAGCACAATCGACTTACTCCATTGTTCAATTGAATCTCGATAAATCAAATTGATGACGGCTACCTCTGTTTTGTTGAAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATCACAGGAAAGGGAGCTTTGGCGCAGTTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTTACGGATGAGGAAGATGATGAATGA

mRNA sequence

ATGGCGGCTCAAACCATGCTTTTCACTTCTGGTGTGTGCGTCGGCCATGGCGTGGGTGTTAAGAGAGAATTAAGCCTTAGACCTAACGCTCAATTTACTCGTCTCTTTTTTAATCCTCTGCCTTCCAACTCTGTTTCTTTGCCGGCGCGTGGTTTCACGACTCTTGCTATCTTTAAATCCAGAACTAAAGTGCCGCCCAAGAAGGTTGCGAAGCCGAAGCAGAAGGTTGAAGACGGAGTTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCTATGATCGGCTTTGCTGCATCTATATTGGGAGAAGCGATCACCGGAAAGGGAATTCTGGCACAACTGAACTTGGAAACTGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGCTTGGAACGCGCCGTTATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATCACAGGAAAGGGAGCTTTGGCGCAGTTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTTACGGATGAGGAAGATGATGAATGA

Coding sequence (CDS)

ATGGCGGCTCAAACCATGCTTTTCACTTCTGGTGTGTGCGTCGGCCATGGCGTGGGTGTTAAGAGAGAATTAAGCCTTAGACCTAACGCTCAATTTACTCGTCTCTTTTTTAATCCTCTGCCTTCCAACTCTGTTTCTTTGCCGGCGCGTGGTTTCACGACTCTTGCTATCTTTAAATCCAGAACTAAAGTGCCGCCCAAGAAGGTTGCGAAGCCGAAGCAGAAGGTTGAAGACGGAGTTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCTATGATCGGCTTTGCTGCATCTATATTGGGAGAAGCGATCACCGGAAAGGGAATTCTGGCACAACTGAACTTGGAAACTGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGCTTGGAACGCGCCGTTATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATCACAGGAAAGGGAGCTTTGGCGCAGTTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTTACGGATGAGGAAGATGATGAATGA

Protein sequence

MAAQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLPSNSVSLPARGFTTLAIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

Homology

[Close]

BLAST of HG10003891 vs. NCBI nr
Match: XP_038885143.1 (photosystem II 22 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 260/271 (95.94%), Postives = 268/271 (98.89%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLPSNSVSLPARGFTTLAIFKS 60
           MAAQTML TSGVCVGHGVGVKREL LRPNAQF+RLFFNPLPS+SVSLPARGFTTLA+FKS
Sbjct: 1   MAAQTMLLTSGVCVGHGVGVKRELRLRPNAQFSRLFFNPLPSHSVSLPARGFTTLAVFKS 60

Query: 61  RTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGIL 120
           RTK PPKKV+KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGIL
Sbjct: 61  RTKAPPKKVSKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGIL 120

Query: 121 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSF 180
           AQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK+F
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKNF 180

Query: 181 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 240
           RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI
Sbjct: 181 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 240

Query: 241 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 271

[Close]

BLAST of HG10003891 vs. NCBI nr
Match: XP_004150442.1 (photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hypothetical protein Csa_018297 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 2.8e-140
Identity = 261/272 (95.96%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRPN-AQFTRLFFNPLPSNSVSLPARGFTTLAIFK 60
           MAAQTML TSGVCVGHGV +KRELSLRPN  QFTRLFFNPLPS+SVSLP RGFTTLA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTK PPKKV KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of HG10003891 vs. NCBI nr
Match: XP_008466710.1 (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA0059887.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa] >TYK24837.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 505.8 bits (1301), Expect = 2.4e-139
Identity = 259/272 (95.22%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRP-NAQFTRLFFNPLPSNSVSLPARGFTTLAIFK 60
           MAAQTML TSGVCVGHGV +KRELSLRP N QFTRLFFNPLP++SVSLPARGFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTK PPKKV KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of HG10003891 vs. NCBI nr
Match: XP_022952982.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_023545993.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7032798.1 Photosystem II 22 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483.8 bits (1244), Expect = 9.7e-133
Identity = 245/275 (89.09%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELS-----LRPNAQFTRLFFNPLPSNSVSLPARGFTTL 60
           MAAQTM+ +SGVC  HGV +KRE++     LRPNAQF+RLFFNPLPS+SVSLPARGF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ KVP KKV KPK+KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of HG10003891 vs. NCBI nr
Match: XP_022991058.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 480.7 bits (1236), Expect = 8.2e-132
Identity = 244/275 (88.73%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELS-----LRPNAQFTRLFFNPLPSNSVSLPARGFTTL 60
           MAAQTM+ +SGVC  HGV +KRE++     LRPNAQ +RLFFNPLPS+SVSLPARGF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ KVP KKV KPK+KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of HG10003891 vs. ExPASy Swiss-Prot
Match: Q02060 (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.0e-108
Identity = 207/278 (74.46%), Postives = 234/278 (84.17%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKREL-------SLRPNAQFTRLFFNPLPSNSVSLPARGFT 60
           MA   +L   GV   + + +KR          ++P +  + LFF+PLPS+S S  +  F 
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSS-SSSSTVFK 60

Query: 61  TLAIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEA 120
           TLA+FKS+ K  PKKV KPK KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAAS+LGE 
Sbjct: 61  TLALFKSKAKA-PKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+AV
Sbjct: 121 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVD--EPTTGLEKAV 180

Query: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK  RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           GVPINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E+++
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEED 274

[Close]

BLAST of HG10003891 vs. ExPASy Swiss-Prot
Match: Q9FPP4 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 8.6e-108
Identity = 208/276 (75.36%), Postives = 229/276 (82.97%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLP----SNSVSLPARGF--TTLA 62
           AQTML T+   V           L+P    + LF   LP    S++ +  +  F  TT+A
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPK-PLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVA 61

Query: 63  IFKSRTKVPPKKVAKP--KQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 122
           +FKS+ K PPKKVA P  KQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAI
Sbjct: 62  LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 121

Query: 123 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 182
           TGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGLE+AVI
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVI 181

Query: 183 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETG
Sbjct: 182 PPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETG 241

Query: 243 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 VPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of HG10003891 vs. ExPASy Swiss-Prot
Match: P54773 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.1e-107
Identity = 208/276 (75.36%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLP----SNSVSLPARGF--TTLA 62
           AQTML T+   V           L+P    + LF   LP    S+S +  +  F  TT+A
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPK-PLSSLFLPSLPLRFSSSSTNASSSKFTSTTVA 61

Query: 63  IFKSRTKVPPKKVAKP--KQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 122
           +FKS+ K PPKKVA P  KQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAI
Sbjct: 62  LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 121

Query: 123 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 182
           TGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGLE+AVI
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVI 181

Query: 183 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETG
Sbjct: 182 PPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETG 241

Query: 243 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 VPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of HG10003891 vs. ExPASy Swiss-Prot
Match: Q9XF91 (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.7e-106
Identity = 205/270 (75.93%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLPSNSVSLPAR--GFTTLAIFKS 62
           AQTML TSGV  GH +  K  L+ +P      L  N    + V+LP+R   F  LA+FK 
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA-QPKVHHLFLSGN----SPVALPSRRQSFVPLALFKP 61

Query: 63  RTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGIL 122
           +TK  PKKV KPK KVEDG+FGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGIL
Sbjct: 62  KTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGIL 121

Query: 123 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSF 182
           AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ 
Sbjct: 122 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNV 181

Query: 183 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 242
           RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +I
Sbjct: 182 RSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDI 241

Query: 243 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           EPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 EPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of HG10003891 vs. ExPASy Swiss-Prot
Match: Q9SMB4 (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.0e-104
Identity = 205/275 (74.55%), Postives = 225/275 (81.82%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNP-----LPSNSVSLPAR-GFTTLA 62
           AQTML T+   V   +  K  L  R   +    FF P      PS S S  +    TT+A
Sbjct: 2   AQTMLLTANAKV--DLRSKESLVERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVA 61

Query: 63  IFKSRTKVPPKKVA-KPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 122
           +FKS+ K P KKV  KPK+KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAIT
Sbjct: 62  LFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAIT 121

Query: 123 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 182
           GKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL++AVIP
Sbjct: 122 GKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIP 181

Query: 183 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGK F+SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGV
Sbjct: 182 PGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGV 241

Query: 243 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Sbjct: 242 PINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of HG10003891 vs. ExPASy TrEMBL
Match: A0A0A0K7N4 (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.4e-140
Identity = 261/272 (95.96%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRPN-AQFTRLFFNPLPSNSVSLPARGFTTLAIFK 60
           MAAQTML TSGVCVGHGV +KRELSLRPN  QFTRLFFNPLPS+SVSLP RGFTTLA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTK PPKKV KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of HG10003891 vs. ExPASy TrEMBL
Match: A0A5A7UZ08 (Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00970 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 259/272 (95.22%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRP-NAQFTRLFFNPLPSNSVSLPARGFTTLAIFK 60
           MAAQTML TSGVCVGHGV +KRELSLRP N QFTRLFFNPLP++SVSLPARGFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTK PPKKV KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of HG10003891 vs. ExPASy TrEMBL
Match: A0A1S3CS23 (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 259/272 (95.22%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELSLRP-NAQFTRLFFNPLPSNSVSLPARGFTTLAIFK 60
           MAAQTML TSGVCVGHGV +KRELSLRP N QFTRLFFNPLP++SVSLPARGFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTK PPKKV KPKQKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of HG10003891 vs. ExPASy TrEMBL
Match: A0A6J1GLX6 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455493 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.7e-133
Identity = 245/275 (89.09%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELS-----LRPNAQFTRLFFNPLPSNSVSLPARGFTTL 60
           MAAQTM+ +SGVC  HGV +KRE++     LRPNAQF+RLFFNPLPS+SVSLPARGF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ KVP KKV KPK+KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of HG10003891 vs. ExPASy TrEMBL
Match: A0A6J1JV31 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111487764 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.0e-132
Identity = 244/275 (88.73%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MAAQTMLFTSGVCVGHGVGVKRELS-----LRPNAQFTRLFFNPLPSNSVSLPARGFTTL 60
           MAAQTM+ +SGVC  HGV +KRE++     LRPNAQ +RLFFNPLPS+SVSLPARGF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ KVP KKV KPK+KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of HG10003891 vs. TAIR 10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 385.6 bits (989), Expect = 3.4e-107
Identity = 205/270 (75.93%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLPSNSVSLPAR--GFTTLAIFKS 62
           AQTML TSGV  GH +  K  L+ +P      L  N    + V+LP+R   F  LA+FK 
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA-QPKVHHLFLSGN----SPVALPSRRQSFVPLALFKP 61

Query: 63  RTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGIL 122
           +TK  PKKV KPK KVEDG+FGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGIL
Sbjct: 62  KTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGIL 121

Query: 123 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSF 182
           AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ 
Sbjct: 122 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNV 181

Query: 183 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 242
           RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +I
Sbjct: 182 RSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDI 241

Query: 243 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           EPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 EPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of HG10003891 vs. TAIR 10
Match: AT1G44575.2 (Chlorophyll A-B binding family protein )

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-66
Identity = 138/190 (72.63%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 3   AQTMLFTSGVCVGHGVGVKRELSLRPNAQFTRLFFNPLPSNSVSLPAR--GFTTLAIFKS 62
           AQTML TSGV  GH +  K  L+ +P      L  N    + V+LP+R   F  LA+FK 
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA-QPKVHHLFLSGN----SPVALPSRRQSFVPLALFKP 61

Query: 63  RTKVPPKKVAKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGIL 122
           +TK  PKKV KPK KVEDG+FGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGIL
Sbjct: 62  KTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGIL 121

Query: 123 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSF 182
           AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ 
Sbjct: 122 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNV 181

Query: 183 RSALGLKEGG 191
           RSALGLKE G
Sbjct: 182 RSALGLKEQG 184

The following BLAST results are available for this feature:

BLAST of HG10003891 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885143.1	1.4e-142	95.94	photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004150442.1	2.8e-140	95.96	photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hyp...	[more]
XP_008466710.1	2.4e-139	95.22	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA00598...	[more]
XP_022952982.1	9.7e-133	89.09	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_02354...	[more]
XP_022991058.1	8.2e-132	88.73	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of HG10003891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02060	5.0e-108	74.46	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
Q9FPP4	8.6e-108	75.36	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
P54773	1.1e-107	75.36	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
Q9XF91	4.7e-106	75.93	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SMB4	2.0e-104	74.55	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]

BLAST of HG10003891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N4	1.4e-140	95.96	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
A0A5A7UZ08	1.2e-139	95.22	Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS23	1.2e-139	95.22	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1GLX6	4.7e-133	89.09	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JV31	4.0e-132	88.73	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of HG10003891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44575.1	3.4e-107	75.93	Chlorophyll A-B binding family protein	[more]
AT1G44575.2	1.3e-66	72.63	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 85..215 e-value: 7.2E-9 score: 36.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 132..241 e-value: 1.1E-6 score: 30.9 coord: 5..131 e-value: 1.6E-6 score: 30.3
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..183 coord: 193..256
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 193..256
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..183
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 75..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003891.1	HG10003891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding