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HG10003890 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGTGTACAGAGATCCAAACTTCTGTTACTTCCATCCTAAAGAAATAGTGGTGGGCGTCTGCGCTTTGTGCTTAAACGAGCGGCTTCTTATTTTGGCGTCCAGACGAGGCCGCCACCACTCTTCAGCCCGAAGCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGCTCTTTCATTAGCCGTCTCGAATTCCGGCATTCGAAGCCGGAAAACTCCGACGATGAAGCTTCCACCAGTCAAGAAGGTACTCCTATTCAGCGTTAATATGCATTATATATATATATATCCTTTTTCAGCTGTGTGATATATAAATCAGAATCATGAAGAAAATTATACTCCTTTTTCTTAGTGTCAAAATCTCATAGTCATGTAGAAAATTAGTGTTCCTTGGCATTTTCAGCCGTGTGATATAAAAACTGGCAGAAAAGAAGAAAATCATTAATGGGTTTGTGTGTGTGTGTATTTGTTTCTCTATTCCATTAGGATGGAATATGAGCTATTCAGAGAAGGAGAGTTCAAAATGAGTTAAATGCAATAAAAAACAAGGAAAAAGAAAAACGGTGGAATGGTAAATGAGTGGTTTGGCAGAAGGGGGCAGTGTCAGAAACACAGAAAGTACAAGAATAAAAAAGAAACAGAGTAAGTAAACGGTGGAGGAGACTGTTTAGCAACAGTTGGGAAAAGTTCAAGTTTGAATTGTTCGAATTATTACAGAGAATCAGAGTAGACAGGTTCTGTAATCTCAAAGATTAGGCAGAACGTAGACAGAATTCTGGGGTTAAACTCTGAAGCAAAGTGGTGGGGGTAGGGGAGGGCAAGGAAAACAAAACAGAAGTTCACATCTGGACAACACTGACGAGTATCTTTCAACTTTTTTTTCTTTTTCTTCTTCTTCTTTCTTTTAATATTAGTTAATTGTATTATATTCGTTTGAGAGATTGTTGTGTCTTTGGATTTATTTTTAAAGATTTAATTTTTTATGGGACCCACTCAAAAAATTATGTAGACTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAGGAGAACAAGGTATCAGAGGTGTCCCTGGAAAACTGCAGCCTGTCATGGAATCATCACTTGAGCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCACTTAGGTGGCGGAAGCGGATTGGCCACCTCTTCCAGCTCATCAGAAGGAAAAGGTCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAACTCTGACAAGGTCAAGAAATACTGAATAG ATGAATGTGTACAGAGATCCAAACTTCTGTTACTTCCATCCTAAAGAAATAGTGGTGGGCGTCTGCGCTTTGTGCTTAAACGAGCGGCTTCTTATTTTGGCGTCCAGACGAGGCCGCCACCACTCTTCAGCCCGAAGCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGCTCTTTCATTAGCCGTCTCGAATTCCGGCATTCGAAGCCGGAAAACTCCGACGATGAAGCTTCCACCAGTCAAGAAGACTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAGGAGAACAAGGTATCAGAGGTGTCCCTGGAAAACTGCAGCCTGTCATGGAATCATCACTTGAGCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCACTTAGGTGGCGGAAGCGGATTGGCCACCTCTTCCAGCTCATCAGAAGGAAAAGGTCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAACTCTGACAAGGTCAAGAAATACTGAATAG ATGAATGTGTACAGAGATCCAAACTTCTGTTACTTCCATCCTAAAGAAATAGTGGTGGGCGTCTGCGCTTTGTGCTTAAACGAGCGGCTTCTTATTTTGGCGTCCAGACGAGGCCGCCACCACTCTTCAGCCCGAAGCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGCTCTTTCATTAGCCGTCTCGAATTCCGGCATTCGAAGCCGGAAAACTCCGACGATGAAGCTTCCACCAGTCAAGAAGACTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAGGAGAACAAGGTATCAGAGGTGTCCCTGGAAAACTGCAGCCTGTCATGGAATCATCACTTGAGCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCACTTAGGTGGCGGAAGCGGATTGGCCACCTCTTCCAGCTCATCAGAAGGAAAAGGTCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAACTCTGACAAGGTCAAGAAATACTGAATAG MNVYRDPNFCYFHPKEIVVGVCALCLNERLLILASRRGRHHSSARSCRKTPINLSKIFAFSSFISRLEFRHSKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCSLSWNHHLSKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWIRTLTRSRNTE Homology
BLAST of HG10003890 vs. NCBI nr
Match: XP_038884296.1 (uncharacterized protein LOC120075175 [Benincasa hispida]) HSP 1 Score: 370.5 bits (950), Expect = 8.4e-99 Identity = 183/189 (96.83%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of HG10003890 vs. NCBI nr
Match: XP_004150445.1 (uncharacterized protein LOC101207127 [Cucumis sativus] >KGN47729.1 hypothetical protein Csa_018229 [Cucumis sativus]) HSP 1 Score: 360.9 bits (925), Expect = 6.6e-96 Identity = 180/190 (94.74%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of HG10003890 vs. NCBI nr
Match: KAA0059884.1 (uncharacterized protein E6C27_scaffold108G001760 [Cucumis melo var. makuwa] >TYK24834.1 uncharacterized protein E5676_scaffold184G00930 [Cucumis melo var. makuwa]) HSP 1 Score: 357.5 bits (916), Expect = 7.3e-95 Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of HG10003890 vs. NCBI nr
Match: XP_008466708.1 (PREDICTED: uncharacterized protein LOC103504055 [Cucumis melo]) HSP 1 Score: 357.5 bits (916), Expect = 7.3e-95 Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of HG10003890 vs. NCBI nr
Match: XP_022141395.1 (uncharacterized protein LOC111011807 [Momordica charantia]) HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94 Identity = 176/190 (92.63%), Postives = 184/190 (96.84%), Query Frame = 0
BLAST of HG10003890 vs. ExPASy TrEMBL
Match: A0A0A0KFU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G390120 PE=4 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96 Identity = 180/190 (94.74%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of HG10003890 vs. ExPASy TrEMBL
Match: A0A5A7UXW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00930 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.5e-95 Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of HG10003890 vs. ExPASy TrEMBL
Match: A0A1S3CRU8 (uncharacterized protein LOC103504055 OS=Cucumis melo OX=3656 GN=LOC103504055 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.5e-95 Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of HG10003890 vs. ExPASy TrEMBL
Match: A0A6J1CHY8 (uncharacterized protein LOC111011807 OS=Momordica charantia OX=3673 GN=LOC111011807 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 6.0e-95 Identity = 176/190 (92.63%), Postives = 184/190 (96.84%), Query Frame = 0
BLAST of HG10003890 vs. ExPASy TrEMBL
Match: A0A6J1FK19 (uncharacterized protein LOC111444738 OS=Cucurbita moschata OX=3662 GN=LOC111444738 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 7.9e-95 Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of HG10003890 vs. TAIR 10
Match: AT1G21830.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 154.8 bits (390), Expect = 6.7e-38 Identity = 95/202 (47.03%), Postives = 131/202 (64.85%), Query Frame = 0
BLAST of HG10003890 vs. TAIR 10
Match: AT1G44608.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21830.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13 Identity = 59/167 (35.33%), Postives = 81/167 (48.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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