HG10003879 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003879
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Retrotransposon protein
Location	Chr08: 11138637 .. 11139119 (-)
RNA-Seq Expression	HG10003879
Synteny	HG10003879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATTCATTACTCTCCTCTTCCACACACTCTCTTCTATTCTCTCGAGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCACCATCAATGCTCCTTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATATAACGAGGTGGTACGAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTACGTCGAGCTGCAGTCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACACAATGGAAGCATGATTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA

mRNA sequence

ATGCACATTCATTACTCTCCTCTTCCACACACTCTCTTCTATTCTCTCGAGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCACCATCAATGCTCCTTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATATAACGAGGTGGTACGAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTACGTCGAGCTGCAGTCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACACAATGGAAGCATGATTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA

Coding sequence (CDS)

ATGCACATTCATTACTCTCCTCTTCCACACACTCTCTTCTATTCTCTCGAGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCACCATCAATGCTCCTTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATATAACGAGGTGGTACGAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTACGTCGAGCTGCAGTCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACACAATGGAAGCATGATTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA

Protein sequence

MHIHYSPLPHTLFYSLEPSSPFSETLINDHFLTINAPSTLRLLPTPGSRRHSTSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCMEVLRLHRNET

Homology

[Close]

BLAST of HG10003879 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-09
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W 
Sbjct: 138 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYS--GDLMDTFRASMRETSKEIGKIAAWQ 197

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCME 153
             K ++     + LYV+LQ+I  + + D L VA+SLL DP +L  F+D+P +WK+  CM 
Sbjct: 198 REKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMR 257

[Close]

BLAST of HG10003879 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W 
Sbjct: 424 LEPPSGEDMPSTPTSMAHDAGLCRPSKKRRPYS--GDLMDTFRASMRETSKEIGKIAAWQ 483

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCME 153
             K ++     + LY ELQ+I  + + D L VA+SLL DP +L  F+D+P +WK+  CM 
Sbjct: 484 REKMEIESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMR 543

[Close]

BLAST of HG10003879 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W 
Sbjct: 288 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYS--GDLMDTFRASMRETSKEIGKIATWQ 347

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPT 143
             K ++     + LY ELQ+I  + + D L VA+SLL DP +L  F+D+PT
Sbjct: 348 REKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPT 396

[Close]

BLAST of HG10003879 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W 
Sbjct: 138 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYS--GDLMDTFRASMRETSKEIGKIAAWQ 197

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCME 153
             K ++     + LYV+LQ+I  + + D L VA+SLL DP +L  F+D+P +WK+  CM 
Sbjct: 198 REKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMR 257

[Close]

BLAST of HG10003879 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.6e-09
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W 
Sbjct: 424 LEPPSGEDMPSTPTSMAHDAGLCRPSKKRRPYS--GDLMDTFRASMRETSKEIGKIAAWQ 483

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCME 153
             K ++     + LY ELQ+I  + + D L VA+SLL DP +L  F+D+P +WK+  CM 
Sbjct: 484 REKMEIESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMR 543

[Close]

BLAST of HG10003879 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-06
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 34  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWL 93
           +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W 
Sbjct: 288 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYS--GDLMDTFRASMRETSKEIGKIATWQ 347

Query: 94  IVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPT 143
             K ++     + LY ELQ+I  + + D L VA+SLL DP +L  F+D+PT
Sbjct: 348 REKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPT 396

The following BLAST results are available for this feature:

BLAST of HG10003879 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050106.1	2.3e-09	35.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065306.1	2.0e-08	33.61	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	1.6e-05	35.14	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]

BLAST of HG10003879 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7F7	1.1e-09	35.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG45	9.6e-09	33.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7T4	7.6e-06	35.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10003879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003879.1	HG10003879.1	mRNA