HG10003737 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003737
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 7597667 .. 7598032 (-)
RNA-Seq ExpressionHG10003737
SyntenyHG10003737
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

mRNA sequence

ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

Coding sequence (CDS)

ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

Protein sequence

MYGLNERGGDGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKKMAKEEESGHRSIPRILYRPLKFRTWYGFPRELSQAALKSVESPKHRRMQLKAQFIVMDRA
Homology
[Close]
BLAST of HG10003737 vs. NCBI nr
Match: KAE8646628.1 (hypothetical protein Csa_023588, partial [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 6  ERGGDGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKK 62
          ERGGDG  G KKRLM +KAICN SI+ DFPSLG+ EV +INQ+KKSLRI++QK KK
Sbjct: 3  ERGGDGRGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKK 58

[Close]
BLAST of HG10003737 vs. ExPASy TrEMBL
Match: A0A0A0K8H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 10 DGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKK 62
          DGG G KKRLM +KAICN SI+ DFPSLG+ EV +INQ+KKSLRI++QK KK
Sbjct: 28 DGG-GDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKK 78

The following BLAST results are available for this feature:
BLAST of HG10003737 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646628.15.5e-1171.43hypothetical protein Csa_023588, partial [Cucumis sativus][more]
BLAST of HG10003737 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10003737 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H89.5e-0971.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1[more]
BLAST of HG10003737 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003737.1HG10003737.1mRNA