HG10003715 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003715
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 6655607 .. 6655997 (+)
RNA-Seq ExpressionHG10003715
SyntenyHG10003715
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTGCATGACCCCTGCAGATTTGACTCTATCTACACTCGGAGCCAATCCCCTATCGGTCCTGCCACCACGCCGCAGAACGGGTTAAAGGGGGAGAGCGCTAGGACGGACGACGTCAAGGAGAACGTCGAGACGCCATCAGTTTGGAGCGCGAGGCCTGCAGAGCTTCCTGCAAAGGAGATAAGAAAAGACTCAGCAGAGGAGATCCGGTAACTGTTATGAATGTGGAGTGGGGCATTTTGCTCGTTACTGTCCCATCCTAATGTTCAGACGGACGAATGCTGCTGGGAGAGTGCAGAATAGACCAGCTGAAGATGGAAGAGTGAACGTTGTGGAGCCTAGAGCCCGGGAAGGAAGCTCTCAAGGTAAGTTCAAGTCGAAACCATAG

mRNA sequence

ATGTATTTGCATGACCCCTGCAGATTTGACTCTATCTACACTCGGAGCCAATCCCCTATCGGTCCTGCCACCACGCCGCAGAACGGGTTAAAGGGGGAGAGCGCTAGGACGGACGACGTCAAGGAGAACGTCGAGACGCCATCAGTTTGGAGCGCGAGGCCTGCAGAGCTTCCTGCAAAGGAGATAAGAAAAGACTCAGCAGAGGAGATCCGACGGACGAATGCTGCTGGGAGAGTGCAGAATAGACCAGCTGAAGATGGAAGAGTGAACGTTGTGGAGCCTAGAGCCCGGGAAGGAAGCTCTCAAGGTAAGTTCAAGTCGAAACCATAG

Coding sequence (CDS)

ATGTATTTGCATGACCCCTGCAGATTTGACTCTATCTACACTCGGAGCCAATCCCCTATCGGTCCTGCCACCACGCCGCAGAACGGGTTAAAGGGGGAGAGCGCTAGGACGGACGACGTCAAGGAGAACGTCGAGACGCCATCAGTTTGGAGCGCGAGGCCTGCAGAGCTTCCTGCAAAGGAGATAAGAAAAGACTCAGCAGAGGAGATCCGACGGACGAATGCTGCTGGGAGAGTGCAGAATAGACCAGCTGAAGATGGAAGAGTGAACGTTGTGGAGCCTAGAGCCCGGGAAGGAAGCTCTCAAGGTAAGTTCAAGTCGAAACCATAG

Protein sequence

MYLHDPCRFDSIYTRSQSPIGPATTPQNGLKGESARTDDVKENVETPSVWSARPAELPAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPRAREGSSQGKFKSKP
Homology
BLAST of HG10003715 vs. NCBI nr
Match: GEZ49619.1 (hypothetical protein Ccrd_001133 [Tanacetum cinerariifolium])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 36  RTDDVKENVETPSVWSARPAELPAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPR 95
           R DD KEN+ETPSVWSARPAEL A+EI                   RPA+DGRV+VVEPR
Sbjct: 34  RHDDFKENIETPSVWSARPAELAAEEI-------------------RPAKDGRVHVVEPR 81

Query: 96  AREGSSQ 103
           ARE   Q
Sbjct: 94  AREALKQ 81

BLAST of HG10003715 vs. NCBI nr
Match: GFA45524.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 37/63 (58.73%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 36  RTDDVKENVETPSVWSARPAELPAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPR 95
           R D  KENVETP VWS RPAELPA+EI                   RPAEDGRV+VVEPR
Sbjct: 72  RQDGFKENVETPLVWSVRPAELPAEEI-------------------RPAEDGRVHVVEPR 115

Query: 96  ARE 99
           ARE
Sbjct: 132 ARE 115

BLAST of HG10003715 vs. NCBI nr
Match: GFA47436.1 (ATP synthase subunit alpha, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 38  DDVKENVETPSVWSARPAELPAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPRAR 97
           D  KENV+TPSVWSARPAEL A+EI                   RPAEDGRV+VVEPRAR
Sbjct: 176 DGFKENVKTPSVWSARPAELAAEEI-------------------RPAEDGRVHVVEPRAR 222

Query: 98  EGSSQG 104
           E   +G
Sbjct: 236 EALKKG 222

BLAST of HG10003715 vs. NCBI nr
Match: KAG9438866.1 (hypothetical protein H6P81_021164 [Aristolochia fimbriata])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 1  MYLHDPCRFDSIYTRSQSPIGPATTPQNG 30
          MYLHDPC FD  YTRSQSP GPATTPQNG
Sbjct: 1  MYLHDPCGFDPTYTRSQSPSGPATTPQNG 29

BLAST of HG10003715 vs. NCBI nr
Match: RLM65673.1 (hypothetical protein C2845_PM16G00610 [Panicum miliaceum])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = 0

Query: 1  MYLHDPCRFDSIYTRSQSPIGPATTPQN 29
          MYLHDPC FD  YTRSQSP GPATTPQN
Sbjct: 1  MYLHDPCGFDPTYTRSQSPSGPATTPQN 28

BLAST of HG10003715 vs. ExPASy TrEMBL
Match: A0A699JPI6 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_617496 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.0e-07
Identity = 37/63 (58.73%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 36  RTDDVKENVETPSVWSARPAELPAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPR 95
           R D  KENVETP VWS RPAELPA+EI                   RPAEDGRV+VVEPR
Sbjct: 72  RQDGFKENVETPLVWSVRPAELPAEEI-------------------RPAEDGRVHVVEPR 115

Query: 96  ARE 99
           ARE
Sbjct: 132 ARE 115

BLAST of HG10003715 vs. ExPASy TrEMBL
Match: A0A3L6PX53 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00610 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = 0

Query: 1  MYLHDPCRFDSIYTRSQSPIGPATTPQN 29
          MYLHDPC FD  YTRSQSP GPATTPQN
Sbjct: 1  MYLHDPCGFDPTYTRSQSPSGPATTPQN 28

BLAST of HG10003715 vs. ExPASy TrEMBL
Match: A0A6L2K363 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_015145 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 58  PAKEIRKDSAEEIRRTNAAGRVQNRPAEDGRVNVVEPRARE 99
           P K + +   E+IRRTNAAG VQNRPA+DGRV+VVEPRARE
Sbjct: 70  PCKGVIQMDQEKIRRTNAAGGVQNRPAKDGRVHVVEPRARE 110

BLAST of HG10003715 vs. ExPASy TrEMBL
Match: A0A6S7KSU9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2697 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 66  SAEEIRRTNAAGRVQNRPAEDGRVNVVEPRAREGSSQG 104
           +A   RRTNAAG VQNRPAEDGRV+VVEPRARE   +G
Sbjct: 179 TAPMFRRTNAAGGVQNRPAEDGRVHVVEPRAREALKKG 216

BLAST of HG10003715 vs. ExPASy TrEMBL
Match: B9TAA1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2052020 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 71 RRTNAAGRVQNRPAEDGRVNVVEPRARE 99
          RRTNAAG VQNRPAEDGRVNVVEPRARE
Sbjct: 41 RRTNAAGGVQNRPAEDGRVNVVEPRARE 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GEZ49619.14.3e-0756.72hypothetical protein Ccrd_001133 [Tanacetum cinerariifolium][more]
GFA45524.11.6e-0658.73hypothetical protein [Tanacetum cinerariifolium][more]
GFA47436.12.8e-0656.06ATP synthase subunit alpha, mitochondrial [Tanacetum cinerariifolium][more]
KAG9438866.13.1e-0586.21hypothetical protein H6P81_021164 [Aristolochia fimbriata][more]
RLM65673.11.5e-0485.71hypothetical protein C2845_PM16G00610 [Panicum miliaceum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A699JPI68.0e-0758.73Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_617496 PE=... [more]
A0A3L6PX537.5e-0585.71Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00610 PE=4 SV... [more]
A0A6L2K3631.3e-0470.73Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_015145 PE=... [more]
A0A6S7KSU94.8e-0473.68Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2697 PE=4 SV=1[more]
B9TAA14.8e-0496.43Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2052020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003715.1HG10003715.1mRNA