HG10003697 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003697
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
LocationChr08: 6304533 .. 6305027 (+)
RNA-Seq ExpressionHG10003697
SyntenyHG10003697
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

mRNA sequence

ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

Coding sequence (CDS)

ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

Protein sequence

MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRIRPKVHETDTDTLEENKWTDLEPDVLVNGRGQTTIEEENEDQSYTMVIDRSENHRNQWRTSRSVTQGRSRILRRRYKIVCLWNL
Homology
BLAST of HG10003697 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1   MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ---- 60
           MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKG 108

Query: 61  KRTEVKDADSGQASPRGAGRGRG 80
           +R EV+   S     RG G G+G
Sbjct: 109 RREEVR---SQFTIDRGRGEGKG 128

BLAST of HG10003697 vs. NCBI nr
Match: TYG50040.1 (hypothetical protein ES288_D10G144100v1 [Gossypium darwinii])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Sbjct: 77  WIPFKYEKLPNFCFGCGMLGHSLHDCTEIIPAEENRIREDP 117

BLAST of HG10003697 vs. NCBI nr
Match: XP_016732636.1 (uncharacterized protein LOC107943395 [Gossypium hirsutum])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGKLGHGLQDCTSITPAEKIRIREDP 229

BLAST of HG10003697 vs. NCBI nr
Match: PPD84527.1 (hypothetical protein GOBAR_DD18536 [Gossypium barbadense])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0

Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGHSL DC+ +    E   R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGMLGHSLHDCIEIAPAEENRIREDP 229

BLAST of HG10003697 vs. NCBI nr
Match: OMO82636.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0

Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVK 62
           E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  
Sbjct: 137 EQRWADIKYEKLPDFCFDCGRLGHGCKHCKFESKGAEKEGKFGPHM---RTNSLRRLEYG 196

Query: 63  DADSGQASPRGAGRGRGRI 82
           +  + Q   +     RG +
Sbjct: 197 EEVNVQKEKQPENWRRGMV 212

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1   MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ---- 60
           MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKG 108

Query: 61  KRTEVKDADSGQASPRGAGRGRG 80
           +R EV+   S     RG G G+G
Sbjct: 109 RREEVR---SQFTIDRGRGEGKG 128

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D2AZS3 (CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G144100v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Sbjct: 77  WIPFKYEKLPNFCFGCGMLGHSLHDCTEIIPAEENRIREDP 117

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A803QP51 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLV----DGVEIEPRYGPDLI 50
           +E WL   YE LP FC  CGCLGH  + CV  +    +G+E E  Y P+L+
Sbjct: 195 DEHWLEFRYENLPTFCFHCGCLGHPFERCVGFLEMVDEGIEPELPYSPELL 245

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1U8N0M2 (uncharacterized protein LOC107943395 OS=Gossypium hirsutum OX=3635 GN=LOC107943395 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGKLGHGLQDCTSITPAEKIRIREDP 229

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1R3IJA9 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_11842 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.6e-05
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0

Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVK 62
           E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  
Sbjct: 137 EQRWADIKYEKLPDFCFDCGRLGHGCKHCKFESKGAEKEGKFGPHM---RTNSLRRLEYG 196

Query: 63  DADSGQASPRGAGRGRGRI 82
           +  + Q   +     RG +
Sbjct: 197 EEVNVQKEKQPENWRRGMV 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046998.12.1e-0537.35reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta... [more]
TYG50040.12.1e-0556.10hypothetical protein ES288_D10G144100v1 [Gossypium darwinii][more]
XP_016732636.11.0e-0453.66uncharacterized protein LOC107943395 [Gossypium hirsutum][more]
PPD84527.11.0e-0453.66hypothetical protein GOBAR_DD18536 [Gossypium barbadense][more]
OMO82636.11.8e-0437.97reverse transcriptase [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0K21.0e-0537.35Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68... [more]
A0A5D2AZS31.0e-0556.10CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G... [more]
A0A803QP513.9e-0545.10Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A1U8N0M25.0e-0553.66uncharacterized protein LOC107943395 OS=Gossypium hirsutum OX=3635 GN=LOC1079433... [more]
A0A1R3IJA98.6e-0537.97Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_11842 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 3..31
e-value: 1.3E-9
score: 37.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003697.1HG10003697.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding