
HG10003697 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRIRPKVHETDTDTLEENKWTDLEPDVLVNGRGQTTIEEENEDQSYTMVIDRSENHRNQWRTSRSVTQGRSRILRRRYKIVCLWNL Homology
BLAST of HG10003697 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05 Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of HG10003697 vs. NCBI nr
Match: TYG50040.1 (hypothetical protein ES288_D10G144100v1 [Gossypium darwinii]) HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05 Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0
BLAST of HG10003697 vs. NCBI nr
Match: XP_016732636.1 (uncharacterized protein LOC107943395 [Gossypium hirsutum]) HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04 Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0
BLAST of HG10003697 vs. NCBI nr
Match: PPD84527.1 (hypothetical protein GOBAR_DD18536 [Gossypium barbadense]) HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04 Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0
BLAST of HG10003697 vs. NCBI nr
Match: OMO82636.1 (reverse transcriptase [Corchorus capsularis]) HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04 Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0
BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05 Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D2AZS3 (CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G144100v1 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05 Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0
BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A803QP51 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05 Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0
BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1U8N0M2 (uncharacterized protein LOC107943395 OS=Gossypium hirsutum OX=3635 GN=LOC107943395 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05 Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0
BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1R3IJA9 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_11842 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 8.6e-05 Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|