HG10003697 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003697
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CCHC-type domain-containing protein
Location	Chr08: 6304533 .. 6305027 (+)
RNA-Seq Expression	HG10003697
Synteny	HG10003697

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

mRNA sequence

ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

Coding sequence (CDS)

ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGGTGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCGCTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGAGGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGGAAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA

Protein sequence

MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRIRPKVHETDTDTLEENKWTDLEPDVLVNGRGQTTIEEENEDQSYTMVIDRSENHRNQWRTSRSVTQGRSRILRRRYKIVCLWNL

Homology

[Close]

BLAST of HG10003697 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ---- 60
           MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKG 108

Query: 61  KRTEVKDADSGQASPRGAGRGRG 80
           +R EV+   S     RG G G+G
Sbjct: 109 RREEVR---SQFTIDRGRGEGKG 128

[Close]

BLAST of HG10003697 vs. NCBI nr
Match: TYG50040.1 (hypothetical protein ES288_D10G144100v1 [Gossypium darwinii])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Sbjct: 77  WIPFKYEKLPNFCFGCGMLGHSLHDCTEIIPAEENRIREDP 117

[Close]

BLAST of HG10003697 vs. NCBI nr
Match: XP_016732636.1 (uncharacterized protein LOC107943395 [Gossypium hirsutum])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGKLGHGLQDCTSITPAEKIRIREDP 229

[Close]

BLAST of HG10003697 vs. NCBI nr
Match: PPD84527.1 (hypothetical protein GOBAR_DD18536 [Gossypium barbadense])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGHSL DC+ +    E   R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGMLGHSLHDCIEIAPAEENRIREDP 229

[Close]

BLAST of HG10003697 vs. NCBI nr
Match: OMO82636.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVK 62
           E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  
Sbjct: 137 EQRWADIKYEKLPDFCFDCGRLGHGCKHCKFESKGAEKEGKFGPHM---RTNSLRRLEYG 196

Query: 63  DADSGQASPRGAGRGRGRI 82
           +  + Q   +     RG +
Sbjct: 197 EEVNVQKEKQPENWRRGMV 212

[Close]

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ---- 60
           MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKG 108

Query: 61  KRTEVKDADSGQASPRGAGRGRG 80
           +R EV+   S     RG G G+G
Sbjct: 109 RREEVR---SQFTIDRGRGEGKG 128

[Close]

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A5D2AZS3 (CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G144100v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Sbjct: 77  WIPFKYEKLPNFCFGCGMLGHSLHDCTEIIPAEENRIREDP 117

[Close]

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A803QP51 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLV----DGVEIEPRYGPDLI 50
           +E WL   YE LP FC  CGCLGH  + CV  +    +G+E E  Y P+L+
Sbjct: 195 DEHWLEFRYENLPTFCFHCGCLGHPFERCVGFLEMVDEGIEPELPYSPELL 245

[Close]

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1U8N0M2 (uncharacterized protein LOC107943395 OS=Gossypium hirsutum OX=3635 GN=LOC107943395 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 6   WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP 47
           W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Sbjct: 189 WIPFKYEKLPTFCFGCGKLGHGLQDCTSITPAEKIRIREDP 229

[Close]

BLAST of HG10003697 vs. ExPASy TrEMBL
Match: A0A1R3IJA9 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_11842 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.6e-05
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 3   EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVK 62
           E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  
Sbjct: 137 EQRWADIKYEKLPDFCFDCGRLGHGCKHCKFESKGAEKEGKFGPHM---RTNSLRRLEYG 196

Query: 63  DADSGQASPRGAGRGRGRI 82
           +  + Q   +     RG +
Sbjct: 197 EEVNVQKEKQPENWRRGMV 212

The following BLAST results are available for this feature:

BLAST of HG10003697 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046998.1	2.1e-05	37.35	reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta...	[more]
TYG50040.1	2.1e-05	56.10	hypothetical protein ES288_D10G144100v1 [Gossypium darwinii]	[more]
XP_016732636.1	1.0e-04	53.66	uncharacterized protein LOC107943395 [Gossypium hirsutum]	[more]
PPD84527.1	1.0e-04	53.66	hypothetical protein GOBAR_DD18536 [Gossypium barbadense]	[more]
OMO82636.1	1.8e-04	37.97	reverse transcriptase [Corchorus capsularis]	[more]

BLAST of HG10003697 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003697 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0K2	1.0e-05	37.35	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68...	[more]
A0A5D2AZS3	1.0e-05	56.10	CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G...	[more]
A0A803QP51	3.9e-05	45.10	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A1U8N0M2	5.0e-05	53.66	uncharacterized protein LOC107943395 OS=Gossypium hirsutum OX=3635 GN=LOC1079433...	[more]
A0A1R3IJA9	8.6e-05	37.97	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_11842 PE=4 SV...	[more]

BLAST of HG10003697 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 3..31 e-value: 1.3E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003697.1	HG10003697.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding