HG10003693 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003693
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 6072131 .. 6074561 (-)
RNA-Seq Expression	HG10003693
Synteny	HG10003693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTCAAGTGAAAAAACCAGCAAGCTGAATACTGAAACTGATTTTGGTGCTCACTGTTGTTTATGTCTACCAATCTTTTGCAACTGTAAGTCCCTGGTGGAAGCTTTCATGTTCATTATGAAGTTTTTAGGGTTTAAAAAACAGCACACACATACTTCCTCTGCACCCTACCGGCCGCTCTCCTGCTCGCCGGAGCTTTCCTACACCGCCGCCTCAGATCCGCCTCCGACCGATGCATCGGTAAGTTAGTTTTCATTACTCATCACTTGTGTCTGTGTTAATTTTGGTTCGTGTAGCTTCAAAATGTTTATATCTCTTTTTTATTATTATTATTATTTTTACCTTTTTAAAAAGGTTATTTTGACTTATATAAAAATAAACTAAACTATTTATAAATATTGAAAAATTTCACTGTCCATCAGCGATACACCGTGATAGACAATAGAATTTTTCTATATTTGTAAAAAGTTTGATAATTTTTCTATTTATAATAATTTTCCCTTTTAAAATGGTCTTCATACTTTCAGTTTTTTCGTATTTTAGTTTCCACTAGCTATAACATGTGAGATGCACGTGAAATTTGAAGTTTTATTTTACATTGTTTGATTCAAATAGTTGCACCTACTTCTGAAGAGAAAGATAAAATAGTAATTTATGAAAAGTTTAGTTAAAAATAAAATTTGGTTACTATAGTTTCATAGAAGTAACGATTTAGTTCATGTACTTTGATTTGTAACGATTTAGAGACCTTGTATTTTTAAATTTGTAACAATTTAATCATTGAACTTTACCCTGTAACAATTAATAAGTCCTCTATACTTTCAATTTATAATAATTTAATCTATATTACTTTTAAATTTGTTACAACTTAGTCAGTATGATGAAAAATCTCATCAAACATAGTTATCAATTTTGATTATGTAATGCCTTAGTTTTTATAATTTATGAACAAACAAGACCTTAATTTAATCACTTTATCAACTTAAATGTGTAAGAAATTTCATTAAATCCTTCATAGTATTTGTAACGATAGAAACTAATTAAATTGTTAGAAATTGTAAAGTACAAAGACTAAATTGCTACTTATGAAAGTTTAGAAATTAAATTGTTACAAATTTAAAAATAAACCAAAATTCATAGACTGAATTGTCACTTTCATAAAATTTTCAGGATGTAAAAGTGATTTTTAACCCTTCATTTTTTCCGATCACAATTTTAGCACGATATTTCACCCAGTAACCTTGAAACTAACTCTAACTTTATATCAAAGAATTCCTTTTGGTATATAATTTGTCTTTGAAACTCAAAATTTTTACAGAATTGTAACCCTTTTACAAGTGAGTTTGTCAATAATGTTCTCCATACTTTGCCTTTTACTTGTATATGCCCCTTCCTCATCTTATTAAACAAGCTCTAACAATCACTGAGGTTTAGTGGTTGTTATAGTTCAAACCTCCAAACAAATCTTTTAGGTCCGTTTTGGTAACTTATTTGATTTCTTTTTTAGTTTTTGAAAATTAAGTCTATAAATACCACTTCTAAATTTCTTGCTTTGTTATCCACTTTTAATCAATCTTTTTAAAAATCAATCTAAATTTTGAAAACTAAAGAAAATAGTTTTTAAAAACTTGTTTTTATTTTTGGAATTTGACTAAGAATTCAACTATTTTATTTAAAAAAGATGAAACGATAAAAAGAGATTGAGAGAAAGTATGCTTAGTTTTCAACAACAAAAAATTAAGGCTCCGTTTGATAACCATTTCGTGTTTTTTTTATAAAAAAATTAAGCATATAGACACTACTTCCACCTCCAAATTTCTTCTTTTGTTGTCTAGTTTTTATCAATAGTTTAAAAAACTAAGCCAACATTTGAAAACTAAAAAAAATAACTTTTAAAAACTTGTTTTTGTCTTTGAAATTTGGTTAAGAATTCAACTATTGTACTAAAAAAAGATACAAATCATTGTAAGAAATGTGGAAGAAATAGACTTAATTTTTAAAAACTAAAAACAAAGTTTAAATAATTACTAAACGGGCCTAAATACCTGATTTCGAAACTAAAAACAAAGTTTAAATAATTACTAAACGGGCCTAAATACCTGATTTCGAAACAAGTCAAACAACAAGGTAATTTTGCTGAGCATGAATTAAGAAAGATACTTATAAAAAGAGCCCTCAAAACTTTGCAACCAAGGACCAAAGCTTAATTTCCTTCCATGAATTTTTATTAAATATAAAACAAATAATGGAGAGGGTTTTTGTTGGTTGTTTTGCTTCTCACATTTAATTATTTTTGTTTATTATTTAAAATGAAGAAATTTTTTGGATCTGTTGGATTTTGTAGGGTCTAGAAAGTGAGTTAAGTAGACGACGCATTCCTCCTCCACCACGGAGAAGCACCGGCGGCGGTGGCCAGACAGACTAA

mRNA sequence

ATGGAGGATTCAAGTGAAAAAACCAGCAAGCTGAATACTGAAACTGATTTTGGTGCTCACTGTTGTTTATGTCTACCAATCTTTTGCAACTGTAAGTCCCTGGTGGAAGCTTTCATGTTCATTATGAAGTTTTTAGGGTTTAAAAAACAGCACACACATACTTCCTCTGCACCCTACCGGCCGCTCTCCTGCTCGCCGGAGCTTTCCTACACCGCCGCCTCAGATCCGCCTCCGACCGATGCATCGGGTCTAGAAAGTGAGTTAAGTAGACGACGCATTCCTCCTCCACCACGGAGAAGCACCGGCGGCGGTGGCCAGACAGACTAA

Coding sequence (CDS)

ATGGAGGATTCAAGTGAAAAAACCAGCAAGCTGAATACTGAAACTGATTTTGGTGCTCACTGTTGTTTATGTCTACCAATCTTTTGCAACTGTAAGTCCCTGGTGGAAGCTTTCATGTTCATTATGAAGTTTTTAGGGTTTAAAAAACAGCACACACATACTTCCTCTGCACCCTACCGGCCGCTCTCCTGCTCGCCGGAGCTTTCCTACACCGCCGCCTCAGATCCGCCTCCGACCGATGCATCGGGTCTAGAAAGTGAGTTAAGTAGACGACGCATTCCTCCTCCACCACGGAGAAGCACCGGCGGCGGTGGCCAGACAGACTAA

Protein sequence

MEDSSEKTSKLNTETDFGAHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSAPYRPLSCSPELSYTAASDPPPTDASGLESELSRRRIPPPPRRSTGGGGQTD

Homology

[Close]

BLAST of HG10003693 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 3   DSSEKTSKL---NTETDFGAHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSAPY 62
           DS EK+ K    + ETD  +HC + L I   C S+++AF+ I++FLGF     + +  PY
Sbjct: 2   DSIEKSKKQVDDDDETDLHSHCPIFLII---CDSILQAFIAILRFLGF-----NHNGPPY 61

Query: 63  RPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQTD 109
           RP   SPE  YT  SDP      PP D S  ESE  R  +PPPP  STGGGGQTD
Sbjct: 62  RPAPSSPEDCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of HG10003693 vs. NCBI nr
Match: XP_022158220.1 (uncharacterized protein LOC111024756 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 6   EKTSKLNTETDFGAHCCLCLP-IFCNCKSLVEAFMFIMKFLGFK--KQHTH------TSS 65
           +K  + + ETD   HC  CLP IF NC SL++A   +++FLGF+   QH H      T++
Sbjct: 20  KKLEENSNETDGVPHCFSCLPIIFNNCNSLLQA---LIRFLGFQLHTQHPHHSSSSPTAN 79

Query: 66  APYRPLSCSPELSYTAASDPPPTDA----------SGLESELSRRRIPPPPRRSTGGGGQ 109
             Y  +S SPEL Y   SD PPT A           G ESE SRR   PPPRRSTGGGGQ
Sbjct: 80  GAYHLISSSPELCYPGGSDLPPTMADPPPDGSGFMQGRESEFSRR--APPPRRSTGGGGQ 136

[Close]

BLAST of HG10003693 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MEDSSEKTSK-LNTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+DS+EK+ K  + E+D     HC + L IF    S+++AF+ I++F GFK+     ++ 
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIF---DSILQAFIAILRFFGFKR-----NAP 99

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQ 107
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PPPP  STGGGGQ
Sbjct: 100 PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of HG10003693 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MEDSSEKTSK-LNTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+DS+EK+ K  + E+D     HC + L IF    S+++AF+ I++F GFK+     ++ 
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIF---DSILQAFIAILRFFGFKR-----NAP 60

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQ 107
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PPPP  STGGGGQ
Sbjct: 61  PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

[Close]

BLAST of HG10003693 vs. NCBI nr
Match: XP_004138360.2 (uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetical protein Csa_005099 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MEDSSEKTSKL-NTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+ S+EK+ K  + E+D     HC + L IF    S+++ F+ I++F GFK+      + 
Sbjct: 30  MKGSTEKSKKQDDNESDLHPIPHCSIILTIF---DSILQPFISILRFFGFKR-----DAP 89

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQTD 109
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PP P  STGGGGQ D
Sbjct: 90  PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 138

[Close]

BLAST of HG10003693 vs. ExPASy TrEMBL
Match: A0A6J1DV83 (uncharacterized protein LOC111024756 OS=Momordica charantia OX=3673 GN=LOC111024756 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 6   EKTSKLNTETDFGAHCCLCLP-IFCNCKSLVEAFMFIMKFLGFK--KQHTH------TSS 65
           +K  + + ETD   HC  CLP IF NC SL++A   +++FLGF+   QH H      T++
Sbjct: 20  KKLEENSNETDGVPHCFSCLPIIFNNCNSLLQA---LIRFLGFQLHTQHPHHSSSSPTAN 79

Query: 66  APYRPLSCSPELSYTAASDPPPTDA----------SGLESELSRRRIPPPPRRSTGGGGQ 109
             Y  +S SPEL Y   SD PPT A           G ESE SRR   PPPRRSTGGGGQ
Sbjct: 80  GAYHLISSSPELCYPGGSDLPPTMADPPPDGSGFMQGRESEFSRR--APPPRRSTGGGGQ 136

[Close]

BLAST of HG10003693 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MEDSSEKTSK-LNTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+DS+EK+ K  + E+D     HC + L IF    S+++AF+ I++F GFK+     ++ 
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIF---DSILQAFIAILRFFGFKR-----NAP 60

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQ 107
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PPPP  STGGGGQ
Sbjct: 61  PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

[Close]

BLAST of HG10003693 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MEDSSEKTSK-LNTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+DS+EK+ K  + E+D     HC + L IF    S+++AF+ I++F GFK+     ++ 
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIF---DSILQAFIAILRFFGFKR-----NAP 99

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQ 107
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PPPP  STGGGGQ
Sbjct: 100 PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of HG10003693 vs. ExPASy TrEMBL
Match: A0A0A0KBZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-08
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MEDSSEKTSKL-NTETDFG--AHCCLCLPIFCNCKSLVEAFMFIMKFLGFKKQHTHTSSA 60
           M+ S+EK+ K  + E+D     HC + L IF    S+++ F+ I++F GFK+      + 
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIF---DSILQPFISILRFFGFKR-----DAP 60

Query: 61  PYRPLSCSPELSYTAASDP------PPTDASGLESELSRRRIPPPPRRSTGGGGQTD 109
           PYRP S S E  YTA S+P      PP D S  ESE  R  +PP P  STGGGGQ D
Sbjct: 61  PYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

The following BLAST results are available for this feature:

BLAST of HG10003693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886557.1	9.9e-12	46.96	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]
XP_022158220.1	2.2e-11	46.72	uncharacterized protein LOC111024756 [Momordica charantia]	[more]
XP_008464348.1	7.1e-10	45.22	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
KAA0039201.1	7.1e-10	45.22	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004138360.2	6.6e-08	42.74	uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetica...	[more]

BLAST of HG10003693 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DV83	1.1e-11	46.72	uncharacterized protein LOC111024756 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5D3D4J4	3.4e-10	45.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLD8	3.4e-10	45.22	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]
A0A0A0KBZ4	3.2e-08	42.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1	[more]

BLAST of HG10003693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003693.1	HG10003693.1	mRNA