HG10003661 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003661
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S1
Location	Chr08: 5078169 .. 5087913 (+)
RNA-Seq Expression	HG10003661
Synteny	HG10003661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTGATGGCTCAGCAATGCACAGGGTTGAGATGTGAGCCTCTGTTTTCAATTTCCTCCAAGCCACTTGGTCGGAGCCATATGCAGAACAAGGTAGCCCGTTCATTCCCAGTTTTGGCTGCACTAATATCGAGCCCTATTCCCACTCCTCAGACCACAGAGCGTTTCAAGCTCAAGGAGACCTTCAAGAATGCGGCCGATCGCTGCCGTAATGTTCCCATGGAAGGTGTCTCCTTCACTCTCCAAGACTTCCTTGCCTCTCTTGAGAAATACGACTTTGATCCTCAATTGGGATCCAAGGTATTTTCCGCTTCCCTTCTCTTGTGTGATTGCTGAACTTCCGTGGATGTGTTTATTTAATCTTTGGATTTTAAACAGTTTCTAATAAGCTAATGAAGTTTCGATTTTTTGTCTCTATAACTTGATCAATTCACCACTTATGCCATTAAACGCCCAAAATTAGCCTATTACATAATTTTTAAACAGTATAATCAGCATATCACATAAGCTTTAACCGGTCGGAGTTACTGTTAGGAGACCTGTTAAGGGGGGCGTTAAGGACACTAACTTCAAGTATAGAGAATTTCATGTCTGGGACTCCAAATATAATAGTTGTGTTTATAACTATTTATAATCTATAATTAAGTATAGTAAATACTATTTGAAAACCTTCTTTGCTATATTATTTACTATATTTACTATTTTCCACCCATCCTCTTTTTTTTTTTGCACCCCAAACTTAGATTATTATAACCCATAGACTATAATAACCAACTCAGCACTCTAAACGCCCCCTTAGACATAAAATTAAGTGCTGAAAGACCTATTAGATACAACTTTTGAAAGTTTAGGACCAAACTTATTTGATAGTCGTTATATTCCTTTCTGTAATGTTATCTAGCATATCAAGGTGAAATCCTACCTTTTCATTTGAAGAAAATGGGGTTGAAATTTGAACAGTGTTTGTTTATAGGTGAAAGGTACTGTGGTCTATGCAGAAGCTAATGGAGCACTTGTGGAGATTGCTGCCAAGTCCCCTGCATACTTGCCCCTGCAGGAGGCTTGCATTCATAGAATAAAACGTATAGAAGAAGCAGGAATATATCCTGGTTTAAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGCTTGACTTTGAGCTTGAGGCCCATCCAATATGAACTTGCTTGGGAAAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGGCATTTCCACACTGATTTTCCATTCTTTTATTTGTCCGCTTCATACCCAACTGGCACATTTGATAGGGGCCAATGTCACCTTCAAAGCAACCATTAAAAAATACTTTTAATTATATCAAAACAGTTTTAAAAGTGTATAACCAACCTTAAGTTACTCTCTTTAAAAATGCTTATTCTAAAATCACTCTCAAACATATCTAGATCTCTTGTTCTTTTCGAAACTGTTCATATGTAGCCATTTTCTGATAAAATATTCAGGTGGTTGATGCGAACAAAGGGGGAGTTTTGGTAGTTGTGGAAGGCCTAAAAGGATTTGTTCCTTTCTCAGAGATATTAATGGTATTTTCTATAAGCGCTTTGAAGACTTTCATCTTGATCAGTGCTAAAGTACTCTTCTTCTTTTTCTGTACGAATTCCTTTCCATTCTGGTCTCGAGGAACACTGATGGAAATATCTTTGAATCATTAGTATTCTTGTAGTCTTCTTGATGTTAACTATGTACTGCTAATTTACATTCTACCTCTTTTATTGTTTTTATCTTTATTTTTGGTACAATTATTTCAGATATCAACTGCTGAAGAGCTTATCAACAAGGAGCTTCCTCTGAAATTTCTGGTGGTTAATGAGGAACAAACGAGGGTTGTCCTCAGTAACCGTAAGGTCATGGCTGACAGCAAGGCAGAACTTGCAATTGGATCAGTGGTCACTGAAACAGTTCTAAAACTTCAAAAGTATGGTGCCTTTGTTGACATCGGTGGAATCCATGGTCTTCTTCACATCAGTGAGATAAGTCATGATCGCATAAGAGATGTTGCAGCAGTTCTTAAGCCTGGAGACATTCTCAAGGTAGTTTTCAAAGGCCTTCAAGTTATTGGTTATTGGGCTCTTTCACTCATGATACCAATCTCTACAGTGAATTCCTTTGGCATAGGTCATGATATTGAACATTGATCGTGAAAAAGGCCATATTCGTCTTTCTACAAAGAAGCTAGAGCCTAATACTGGGGACATGATTTGCAATCCAGGGCTTGTTTTTGAAAAGGTATTCTCTTTGCTAGTTGAAGTTATCTTTTCCTGTCATTTATATGGATGCTTTTTTTTTTTGGTTCCTCGTGTTGCCCAATAAATACATTTATTGTATTTCAGATACTATGTTTCTGTTAAGATGAATGTCATTGTTTAAAGTGCAACTTTGAACGTGGCTAGGATCTTGTGGCTTGCTAGGATAGGATAGAGGAATCTATTGAGACTAATGTTTCTAATTCTCCTTCACCTTCTGTAGCATGTTTCTCTGTTCTTGTTTTCAGCATTTTAAAGCCATGGCTATATCAGACCTTCTCTTATAGAGTTTTGGTGGTTATTTCATGAATGTTGAAAGCAAAACATAGTCATATGACGGAAGGTTTGTGAATCTATTTAAAAATTAATAGTAGATATTTGGATAATAAAAAGAGATCTTGGAGTTTCTGGTTGTTCCTACTGGAGCGCACTTGGTAGTAACTTTCTATATTTCTGTTTTACTTTGCTTTTCTAATATGGAGTTCATTTCCTAATTGTATTATTAACAAAAGAAGAAGAAAAAGAGCAAGGAGTAAAATTGTGTATGTGGCTTTGTTTCTGTTGACAGGCTGAGGAAATGGCACATAGATTTAGGCAAAGATTAGCTCAAGCAGAGGCATTGGCACGTGCAGACTTGCTTAGTTTTCAGCCTGAGGTATTTTACAGCCATTTTATCCTTGAGATTTTTTAACATTACCCTTAGAATGAAGAAAAAAGATTATGAGGATTAAAAACTAATTTATGTGCTGGAGTTCTGAATCCGTTTCAAATGTAGTGTAATCAAACAAATTTGTTATTACCAAGTATTTCTAAAAATCAATGTTTTTTTAAAAAGAAAATGTTGTATATTGCTAGGCCCCCTATCACAAAAGTATACTCAAGAAGGGGCAAAAAGGGGGATTACACCCCAGATAGGAGCTGCCTAAAAGTGGAGGGGACCAGAAAGGACGTTTGTGAGAAGGGAATGTTAGTATTTATACATCGTTATGGGTTAGGGTTAGTTATCTTGAATTTTGTGATAGAACAGTGTTCTTGTGGTGGAGAGAGCAGCCCTCTTATTTGACTGTAGTTTATCTTGTAGTAACTCTTAATATTTTTCTGTAAGGATCGTTGTAATCGGAGATCATTCCCCTGTTTTAGTAAACTGTTTTCGGATTACTACTAAGTAAGGAAGAGTCCTTACAAGTGGTATCAGAGTCGTCGAAACGCTGGGGAGGTGGAAGAAGATGACGCAGAAGCAAATCGAAGAACGTTTGAGTGCAACGGAGGCGGACATTGGGAGTTTGAAGCAGGATCTCAAAAGACTTCCAGTCGTTGAGAAAAATGTTGAAAAAATGGCGGAGGATATCCGGGCCTTGCACTAGTTGTTCAAAGACGTTTACGGGGATCGACCTAAACCTCAAGGGTCGTCTGAAATCACGGAAATCACGACGGGGAAGAGAAAGATATGCGCGGACGAAGAAGTGGAAGACGATGAGATGGAAGAAGGAGAGTCGTCTCAACTAAGGGAAAGCTCCGATCGGCAAGAGAGGATCAAATTCAAAAAACTGGAAATGCCAGTCTTCAACGGCGATGATCCAGACGGTTGGTTTTTTCGAGTGGAACATTATTTTCAGCTGCACCTGTTAACGGAGAAGGAGAAACTGAAAATTGCTATCGTTAGCCTAGAAGGGAAGGTTCTTAATTGGTTCTGGTGGGTGGAGAATTGAAAAAGATTTCGATCATGGAAGGAGCTAAAACAGAGGATCTACGTCCGTTTCCGACCACGACAGCGCGGGACGTCGTGCGCTCGGTTCTTAGCCATTAAGCAAGAAGGGACGATCACAGATTATCTTCAGAACTTCGAAGAGCTATCGGTGCCGCTGCCAGACCTGGCAGAAAACGTTCTGATAAACACGTTTACGAATGGGCTGGACCCGGTAATTCGAATTGAGGTTTTTTCCATGAGGGCTGTGGGCTTAGAGGATATGATGGATGCGGCCAAACTCGCAGAAGATCGGATAGAAACAGCCCGCACGGCCCAAGGCCCATATGGGAAGGATTGGAAGCCCAACCCTAAAACATCAGGCAAGACAACTGAAGACGTGACGACACGCACCGTCACTTTGGCTGAAAAGATTCCTAATCCCACACCAGCACCGACTACGAAACCCCCATGGAAACGTTGGACGGATTCGGAATTACAAGCTAGAAGAGACAAAGGGCTGTGCTACCGGTGTGACGAACCCTTTAGCAAAGGGCATCGCTGCAAAAATAAAGAACTCCGACTATACGTGGTGGCGGACGAACTCAACGACGTTGAGATGGAGGATGTGGAGATGGACGATCCAATGTTGGAGGTAAGCCCAGTGGTCGAATTGTCGCTTAACTCGGTGGTGGGTCTAACTACTCCAGGTATGTTCAAGTTGAAAGGGAATTTAGGGGACCAAGAAATCATTGTATTGGTGGACTGTGGGGCCACCCACAATTTCGTTTCGCAGCAATTCGTAGAGAGTCTGAACTTGCCGTTGACGGAAACGACAAACTACGGAGTCATCATGGGTTCGGGAGAAGCGGCACAAGGTAAAGGAATATGTAGAAATCTAACCATCACTCTACCGGAGCTCTCTTTTGCAGATGATTTTCTACCACTGGAGTTAGGAAATCTTGATGTGGTTCTGGGCATGCAATTGCTCCGGAAGCAAGGTTCTATGACGGTAGATTGGAAGAATCTGACGATGACCTTTGCGGTAGGAGAATCGAGGATCGTGATCAGAGGGGATCCCACCCTTTCCAGAATGGAGATATCCCTTAAGGTACTCACCAAGACGTGGCAACCGGAAGACCAAGGCTTTCTCGTCGACTTCCGAACGTTGGGGATCCCAAGAGAGGAAAGGGGCATATTAATGGGAGGGGAAATTGAAGAGCTCCAACCGGAAATTGATCAGTTACAACAGTACTATGCAGACGTGTTTGACATGCCCGAGGGGCTGCCACTGATGAGGCGAATTGATCACCGAATCCAATTACAAATGGGCGCCGACCCGGTTAACGTAAGACCATATCGATATCCCCATGCTCAAAAGAACGAGATCGAAAGACTAATCAACGAGATGCTGACCACGGGAATTATCCGGCCCAGCATCAGCCCTTTTTCCAGCCCTGTGATATTAGTGAAGAAGAAAGATGGTAGTTGGCGCTTTTGTGTAGATTACCGTGCCTTAAATCGGGTGACTGTACCAGACAAGTTTCCGATTCCGATGATTGACGAACTCTTGGATGAGCTGAATGGGGCTAAAGTTTTCTAAAAAATCGACCTGAAATCGGGTTACCACCAGATCAGAGTTTGCGATGAAGACGTGAGGAAAACGACATTTTGGACTCACGAGGGACATTACGAGTTTTTGGTGATGCCATTCGGGTTGACTAACGCCCCCCGTCAGGCGCTCATGAATCAGGTTTTTCGCCCATACCTCCGAAAATTTATACTTGATTTTTTTTGATGACATTGATATACAGTCCGAATATAATATCCCATGTGGAGCACCTTACCCTGGTTTTCCGGCAATTACGGGAACATGAATTGTACGCCAACAAGAAAAAATGCCAGTTTGCGAAGGACCGCATTGAATATTTAAGCCACTGGGTATCGGCTAAAGGAGTAGAAGCTGACGAGGAGAAGATCAGAGCCATGCTTCAATGGCCAATTCCGAGAAACGTGAAGGAGTTACGAGGCTTTTTAGGGCTGACCGGTTATTACAGGCGATTCGTGGCCAATTATGGAACTATTGCCGCTCCCCTGACGCGATTAACTAAGAAAAATGGATTCAAGTGGACAGAACAAGCGACTGACGCCTTTGAGATGTTAAAGAAGGCGATGGTCACATTGCCAGTCCTTGCTCTTCCGAATTTTAGCTTGCCATTTGAATTGGAAACCGACGCGTCCGGGACCGGATTGGGCGTAGTGCTGTCTCAGAATAAACGACCCATAGCTTTCTTCAGTCAAAATTTATCCCTCGCAGCGAGGGAAAGGTCGGTGTATGAGAGAGAACTCATGGCCATTGCATTAGCAGTGGAAAAATGGAGGCACTACTTGCTGGGTCACCACTTTACAGTTTACACAGATCAGAAGGCTTTAAGGCATTTATTAGAACAAAGGGAGATCCTCCTTGGGGTGCAGAAATGGGTAACTAAACTGATGGGGTATGATTTTGAAATCTTTTACCGAGCGGGACCGGAGAATAAGGCCGTTGATGCTCTGTCGCGCATTCCAGTGCAAGCCAAATTGAAGATAATATCAGTGCCCTCCTTGATCGATGTTAGTGTGGTTGATGCTGAGGTTCAAGAGGACCCGAAATTAAAGATGATTTTCGACCGATTGATGCAAGAGATAGATAGTGTTCCACGTTACACGACCAAACAAGGGAGGCTGTTTTACAGAGGTCGGCTGGTCCTCTCGAGAAACTCACTGCTGCTACCAACAGTGTTACACACGTTCCATGATTCAGTGATTGGGGGACACTCTAGTTTCCTGCGAACGCGTAAACGCGTGTCGGCGGAGCTATATTGGGAAGGTATGAAGGCAGATATTAAGAAGTATGTGGCAAATTGTGATATCTGCCAAAGAAACAAAATCCAAGCCTGCTCCCCGGTTGGTTTGCTGCAGCCATTACCGATTCCAAATAGACCCTGGGAGGATATATCCATGGATTTCGTGGAAGGCCTACCACGTTCAAAGAAGAATGACACCGTACTGGTAGTGGTGGACAGACTGAGCAAATACGCGCATTTCATTGCCTTAGCCCATCCCTTCTCGGCAAAATCAGTGGCCCAACACTTTGTGCGCGAAGTCGTGCGACTCCACGGGTATCCTCGGTCCATCGTTTCGGATCGTGATCGGATTTTTCTCGTCCATTTCTGGATGGAGTTATTTCGAATGCAGGGTACTCAACTGAAACGGAGCACAGCCTACCACCCACAAACGGACGGTCAAACGGAGGTGGTGAACAAATGCTTGGAACTCTATTTACGATGTTTTTGCAGTGAGAAACCCAAAACATGGACAGATCGACTACCATGGGCAGAGCTTTGGTACAACACCACCTATCACGCATCAACTAAAACGACTCCCTATGCAATAGTGTATGGCCACCCAGCCCCACCGGTGATCGCATATTGTCATTCGTCACAAACGCCGAATGACTCAGTGGAACAGCAGTTGAAGCATCGTGACGAGACATTGGCAACTGTCAAAAATCATCTGAGACATGCCCAAGAGCAGATGAAGAAATTTGCAGACGCCCATCGGTGCGAGGTGGTGTTTGACATTGGTGAATGGGTTTATTTAAAAATCCGACCATACCGGCAACACTCCTTAGCCCGCAAGTGCTGTGAAAAACTTGCCCCAAAGTTTTTTGGGCCTTTCCAAATCTTGGGCCGTGTGGGTGAGGTTGCTTGGTACTAGATCTTCCAGAGACTGCCCAAATTCATCCAGTAATACATGTCTCACAATTGAAGAAGGCCTTGGGGAACCACCAGAAGGTGCAATCTGACGTTACAATGCTGAATGAGCAGTTGGAATGGGTGTTGGAGCCCCGAGCAGTCACACAGATGCGTTGGAATGAGGCAGAGAAGGACTGGGAATGCTTAGTAGAATGGAAGGACCAACCGGAACACGAAGCAATGTGGGAATCCTATGCTTTGTTCACAGAACAATTCCCTAATTTCTACCTTGAGGACAAGGTGGTTCTTCTTCAAAGGGGTATTGCTAGGCCCCCTATCACAAAAGTATACTCAAGAAGGGGCAAAAAGGGGATTACACCCCAGACAGGAGTTGCCTAAAAGTGGAGGGGACCAAAAAGGACGTCTGTGAGAAGGGAATGTTAGTATTTATACATCGTTATGGGTTAGGGTTAGTTATCTTGAATTTTGTGATAGAACAGTGTTCTTGTGGTGGAGAGGCAGCCCTCTTATTTGGCTGTAGTTTTTCTTGTAGTAACTCTTAATATTTTTCTGTAAGGATCGTTGTAATCGGAGATCATTCCCCTGTTTTGGTAAACTGTTTTCGGAATTACTACTAAGTAAGGAAGAGTCCTTACATATATTTATTACCAAAATACTGGAGATGTTTTAACAGTTCTTCTACTCATCTAAAATCACTCTAAATTGATAGATCTTCTAAAAATACTTATAGAAAAAGTGTTTTTACTTAAAACCTTTATTTTCATAAGTTATCCAAAAAACACACTGTTGAACTCTCTTTATTAACCTGATAAATAATATACACCAACCCTCTTAAATATAATACTTCTCTTTATTAATGTTTTTTTGTGTGTCTAATAGAAAGACAATGATGTAGACTTATAGAATGGAAAGTAATATTATCACTGGTCATGAAAGTTTTATAGGCCCTAGCCCTACCGTGATTTTGTGTAGTTGGATACTCTCTATGTTTTTGTTTTTGTTATTCTGCTATTCATGAGGATTCCTAAGAATGTATTTAGCATAATTTCTAAACTAATTAAAAGTGTTTATAACCAGTGTTTTAAAAAGCCTTTGGGGCGTGTGCCTAGGCTCAAGGCACAGGTTTGGTGCTGAAAAGGCAAGGCTCACAAAATAAAGGCACATGGCTTTTGTGAAGCCCTAAGGCTTTAAGCCCTGGTCCTTGGAGTTTTTTCATTATTTTTAATATACTTTAATTATATTAACAAAAAAAAATCAAATTTACTAATCCAATTACTAAGGGGTATTATGGGTAAGTAACTAGTGTTGTATTGTGTAGGTACTAATATATTCCGCACTCAGAAACACCCAACAAATATATTCTCCCTATGATCTCTGGTATAAGATAGTATAGAAATGACAGATAACAATAGCTCTCAAATTAATAGGAAAAAACAGAACACAAAAGATTAAAAAAAAAAAATAGCATGGAATCCCTCTCGGCCGATTCGAGAGCGCTGTTCTCTCCTTCTCTCAAGCTTTTCAACTCCAAAATAACTCCACAAAAAGCAACGGATGTCGCCAAAGCCCTTCATAAACCTCTCGGCTGGTCCCCACGACAAAAATAACCGAATGGTCATCCTCCTCCTACATTGTCCCCTTTTACCCTTCCTTTCATACGTGTGGTTGATTTGGGATCTAACATCTTGGTTATAACATCATTTTGGTGAGAGTTTCTATTATGTGACTTTGAGAGAGATAGCCATTGTAATTTCTTCATTGATATTGTAATATAGTTATCTTTAGTGTTTACTTGTATTTTTGTGTTTGGGTACCTAACAATATTTCTCGACTGCATTATATTGAACTTGAACTATATAACCTTGCCTGTTTTCACAATCATTCAGGGCAGATTAACTTTGAGCAGTGATGGAATATTTGTTCCAGTTACCCCAGAATTGGCTGTAAAGAGAGGGTTAGATATTGAACAATATGTTCCTCCCTTCAGCTGA

mRNA sequence

ATGCCTTTGATGGCTCAGCAATGCACAGGGTTGAGATGTGAGCCTCTGTTTTCAATTTCCTCCAAGCCACTTGGTCGGAGCCATATGCAGAACAAGGTAGCCCGTTCATTCCCAGTTTTGGCTGCACTAATATCGAGCCCTATTCCCACTCCTCAGACCACAGAGCGTTTCAAGCTCAAGGAGACCTTCAAGAATGCGGCCGATCGCTGCCGTAATGTTCCCATGGAAGGTGTCTCCTTCACTCTCCAAGACTTCCTTGCCTCTCTTGAGAAATACGACTTTGATCCTCAATTGGGATCCAAGGTGAAAGGTACTGTGGTCTATGCAGAAGCTAATGGAGCACTTGTGGAGATTGCTGCCAAGTCCCCTGCATACTTGCCCCTGCAGGAGGCTTGCATTCATAGAATAAAACGTATAGAAGAAGCAGGAATATATCCTGGTTTAAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGCTTGACTTTGAGCTTGAGGCCCATCCAATATGAACTTGCTTGGGAAAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCGAACAAAGGGGGAGTTTTGGTAGTTGTGGAAGGCCTAAAAGGATTTGTTCCTTTCTCAGAGATATTAATGATATCAACTGCTGAAGAGCTTATCAACAAGGAGCTTCCTCTGAAATTTCTGGTGGTTAATGAGGAACAAACGAGGGTTGTCCTCAGTAACCGTAAGGTCATGGCTGACAGCAAGGCAGAACTTGCAATTGGATCAGTGGTCACTGAAACAGTTCTAAAACTTCAAAAGTATGGTGCCTTTGTTGACATCGGTGGAATCCATGGTCTTCTTCACATCAGTGAGATAAGTCATGATCGCATAAGAGATGTTGCAGCAGTTCTTAAGCCTGGAGACATTCTCAAGGTCATGATATTGAACATTGATCGTGAAAAAGGCCATATTCGTCTTTCTACAAAGAAGCTAGAGCCTAATACTGGGGACATGATTTGCAATCCAGGGCTTGTTTTTGAAAAGGCTGAGGAAATGGCACATAGATTTAGGCAAAGATTAGCTCAAGCAGAGGCATTGGCACGTGCAGACTTGCTTAGTTTTCAGCCTGAGGGCAGATTAACTTTGAGCAGTGATGGAATATTTGTTCCAGTTACCCCAGAATTGGCTGTAAAGAGAGGGTTAGATATTGAACAATATGTTCCTCCCTTCAGCTGA

Coding sequence (CDS)

ATGCCTTTGATGGCTCAGCAATGCACAGGGTTGAGATGTGAGCCTCTGTTTTCAATTTCCTCCAAGCCACTTGGTCGGAGCCATATGCAGAACAAGGTAGCCCGTTCATTCCCAGTTTTGGCTGCACTAATATCGAGCCCTATTCCCACTCCTCAGACCACAGAGCGTTTCAAGCTCAAGGAGACCTTCAAGAATGCGGCCGATCGCTGCCGTAATGTTCCCATGGAAGGTGTCTCCTTCACTCTCCAAGACTTCCTTGCCTCTCTTGAGAAATACGACTTTGATCCTCAATTGGGATCCAAGGTGAAAGGTACTGTGGTCTATGCAGAAGCTAATGGAGCACTTGTGGAGATTGCTGCCAAGTCCCCTGCATACTTGCCCCTGCAGGAGGCTTGCATTCATAGAATAAAACGTATAGAAGAAGCAGGAATATATCCTGGTTTAAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGCTTGACTTTGAGCTTGAGGCCCATCCAATATGAACTTGCTTGGGAAAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCGAACAAAGGGGGAGTTTTGGTAGTTGTGGAAGGCCTAAAAGGATTTGTTCCTTTCTCAGAGATATTAATGATATCAACTGCTGAAGAGCTTATCAACAAGGAGCTTCCTCTGAAATTTCTGGTGGTTAATGAGGAACAAACGAGGGTTGTCCTCAGTAACCGTAAGGTCATGGCTGACAGCAAGGCAGAACTTGCAATTGGATCAGTGGTCACTGAAACAGTTCTAAAACTTCAAAAGTATGGTGCCTTTGTTGACATCGGTGGAATCCATGGTCTTCTTCACATCAGTGAGATAAGTCATGATCGCATAAGAGATGTTGCAGCAGTTCTTAAGCCTGGAGACATTCTCAAGGTCATGATATTGAACATTGATCGTGAAAAAGGCCATATTCGTCTTTCTACAAAGAAGCTAGAGCCTAATACTGGGGACATGATTTGCAATCCAGGGCTTGTTTTTGAAAAGGCTGAGGAAATGGCACATAGATTTAGGCAAAGATTAGCTCAAGCAGAGGCATTGGCACGTGCAGACTTGCTTAGTTTTCAGCCTGAGGGCAGATTAACTTTGAGCAGTGATGGAATATTTGTTCCAGTTACCCCAGAATTGGCTGTAAAGAGAGGGTTAGATATTGAACAATATGTTCCTCCCTTCAGCTGA

Protein sequence

MPLMAQQCTGLRCEPLFSISSKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKLKETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIAAKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVNEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPPFS

Homology

[Close]

BLAST of HG10003661 vs. NCBI nr
Match: XP_038885297.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885299.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885300.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885301.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885302.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 695.7 bits (1794), Expect = 2.5e-196
Identity = 354/398 (88.94%), Postives = 373/398 (93.72%), Query Frame = 0


Query: 4   MAQQCTGLRCEPLFSIS---SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKLK 63
           MAQQCTGLRCEP FSIS   SKPL  SHMQN V RSFPV+AA+IS PIPTPQTTERFKLK
Sbjct: 1   MAQQCTGLRCEPRFSISSCLSKPLRPSHMQNMVVRSFPVVAAVISGPIPTPQTTERFKLK 60

Query: 64  ETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIAA 123
           +TF +AADRCRN PMEGVSFTLQDFLASLEKY FDPQLG+KVKGTVVY EANGALVEIAA
Sbjct: 61  QTFNDAADRCRNAPMEGVSFTLQDFLASLEKYYFDPQLGAKVKGTVVYTEANGALVEIAA 120

Query: 124 KSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERCR 183
           KSPAYLPL EACIHRIKR+EEAGIYPG REEFVIIGENEDDSLTLSLR IQYELAWERCR
Sbjct: 121 KSPAYLPLPEACIHRIKRVEEAGIYPGFREEFVIIGENEDDSLTLSLRSIQYELAWERCR 180

Query: 184 QLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVNE 243
           QLQAEDV+VKGKVV AN GGVLVVVEGLKGFVP+SEILMISTAEELINKELPLKFLVVNE
Sbjct: 181 QLQAEDVIVKGKVVGANNGGVLVVVEGLKGFVPYSEILMISTAEELINKELPLKFLVVNE 240

Query: 244 EQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRIR 303
           E+TR+VLSNRK+MADSKA+LAIG+VVT TVL+L K+GAFVDIGG+HGLLHISEISHDRI 
Sbjct: 241 EETRIVLSNRKIMADSKAQLAIGTVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 300

Query: 304 DVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQ 363
           D+AAVLKPGDILKVMILNI+ EKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQ
Sbjct: 301 DIAAVLKPGDILKVMILNINHEKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQ 360

Query: 364 RLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELA 399
           RLAQAEALARADLLSFQPEGRL LSSDGI  P+TPELA
Sbjct: 361 RLAQAEALARADLLSFQPEGRLNLSSDGILSPITPELA 398

[Close]

BLAST of HG10003661 vs. NCBI nr
Match: XP_016902972.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA0034974.1 30S ribosomal protein S1 [Cucumis melo var. makuwa] >TYK26997.1 30S ribosomal protein S1 [Cucumis melo var. makuwa])

HSP 1 Score: 610.1 bits (1572), Expect = 1.4e-170
Identity = 318/366 (86.89%), Postives = 331/366 (90.44%), Query Frame = 0


Query: 3   LMAQQCTGLRCEPLFSIS---SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 62
           LMAQ  TGLR EPL SIS   SKPLGRS  QN  ARSF VLAA+ISSPIP+P TTERFKL
Sbjct: 9   LMAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKL 68

Query: 63  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 122
           K+TF +AADRC N PMEGVSFTLQ FLASLEKYDFDPQLGSKVKGTVVY EANGALVEIA
Sbjct: 69  KQTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIA 128

Query: 123 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERC 182
           AKSPAYLPLQEA IHRIKR+EEAGIYPG REEFVIIG+NEDD LTLSLRPIQYELAWERC
Sbjct: 129 AKSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERC 188

Query: 183 RQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVN 242
           RQLQA DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEILMIST EELINKELPLK LVV 
Sbjct: 189 RQLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVE 248

Query: 243 EEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRI 302
           EEQTR+VLSNRKVMADSKA+L IGSVVT TVL+L K+GAFVDIGG+HGLLHISEISHDRI
Sbjct: 249 EEQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRI 308

Query: 303 RDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFR 362
            D+A VLKPGDILKVM+LNIDREKGHIRLSTKKLEPN GDMI NPGLVF KAEEMA RFR
Sbjct: 309 LDIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFR 368

Query: 363 QRLAQA 366
           QRLAQA
Sbjct: 369 QRLAQA 374

[Close]

BLAST of HG10003661 vs. NCBI nr
Match: XP_022138241.1 (30S ribosomal protein S1, chloroplastic [Momordica charantia])

HSP 1 Score: 577.0 bits (1486), Expect = 1.3e-160
Identity = 301/413 (72.88%), Postives = 349/413 (84.50%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   S P    H+QNK ARS PV AA+ISSPIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSTPFSPRHLQNK-ARSLPVHAAVISSPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 120
           KE F++A +RCRN P+EG+SFTL+DF A+LEKYDFD ++G+KVKGTV   +ANGALV+I 
Sbjct: 61  KEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVDIT 120

Query: 121 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWER 180
           AKS AYLP+QEACIHRIK +EEAGI+PG+REEFVIIGENE DDSL LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVV 240
           CRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+I   STAEEL+NKELPLKF+ V
Sbjct: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFVEV 240

Query: 241 NEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDR 300
           +EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 IRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRF 360
           I D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  F
Sbjct: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           RQR+AQAEA+ARAD+L FQPE  LTL++DGI  P+TPEL V+ GLD+   VPP
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELPVE-GLDLSD-VPP 410

[Close]

BLAST of HG10003661 vs. NCBI nr
Match: XP_008438974.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 575.5 bits (1482), Expect = 3.7e-160
Identity = 302/413 (73.12%), Postives = 346/413 (83.78%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   SKP    H+ NK +RS PV AA+IS PIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNK-SRSLPVQAAVISGPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 120
           KE F+ A +RCRN P+EG+SFTL+DF A+LEKYDFD +LG+KVKGTV   + NGALV+I 
Sbjct: 61  KEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDIT 120

Query: 121 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWER 180
           AKS AYLPLQEACIHRIK +EEAGI+PGLREEFVIIGENE DDSL LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVV 240
           CRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+I   STAEEL+NKELPLKF+ V
Sbjct: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEV 240

Query: 241 NEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDR 300
           +EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 IRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRF 360
           I D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  F
Sbjct: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           RQR+AQAEALARAD+L FQPE  LTL++DGI  P+TPEL V+ GLD+   VPP
Sbjct: 361 RQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVE-GLDLND-VPP 410

[Close]

BLAST of HG10003661 vs. NCBI nr
Match: XP_038878013.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 572.4 bits (1474), Expect = 3.2e-159
Identity = 299/413 (72.40%), Postives = 346/413 (83.78%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   SKP    H+Q+K ARS PV AA+IS PIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSRHLQSK-ARSLPVQAAVISGPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 120
           KE F+ A +RCRN P+EG++FTL+DF A+LEKYDFD +LG+KVKGTV   + NGALV+I 
Sbjct: 61  KEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDIT 120

Query: 121 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWER 180
           AKS AYLP+QEACIHRIK +EEAGI+PGLREEFVIIGENE DDSL LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVV 240
           CRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+I   STAEEL+NKELPLKF+ V
Sbjct: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFVEV 240

Query: 241 NEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDR 300
           +EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 IRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRF 360
           I D+  VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  F
Sbjct: 301 ISDIGTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           RQR+AQAEA+ARAD+L FQPE  LTL++DGI  P+TPEL V+ GLD+   VPP
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELPVE-GLDLND-VPP 410

[Close]

BLAST of HG10003661 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.9e-143
Identity = 272/414 (65.70%), Postives = 329/414 (79.47%), Query Frame = 0


Query: 1   MPLMAQQCT-GLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFK 60
           M  +AQQ   GLRC PL + + SKP    H      R  P+++A+    +   QT ER K
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTLK--PRFSPIVSAV---AVSNAQTRERQK 60

Query: 61  LKETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEI 120
           LK+ F++A +RCRN PMEGVSFT+ DF  +L+KYDF+ ++GS+VKGTV   +ANGALV+I
Sbjct: 61  LKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDI 120

Query: 121 AAKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWE 180
            AKS AYLPL EACI+RIK +EEAGI PG+REEFVIIGENE DDSL LSLR IQYELAWE
Sbjct: 121 TAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWE 180

Query: 181 RCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLV 240
           RCRQLQAEDVVVKGK+V ANKGGV+ +VEGL+GFVPFS+I   S+AEEL+ KE+PLKF+ 
Sbjct: 181 RCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVE 240

Query: 241 VNEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHD 300
           V+EEQ+R+V+SNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHD
Sbjct: 241 VDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 RIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHR 360
           R+ D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           FRQR+AQAEA+ARAD+L FQPE  LTLSSDGI  P+T +L  + GLD+   VPP
Sbjct: 361 FRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAE-GLDL-SVVPP 407

[Close]

BLAST of HG10003661 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.4e-138
Identity = 254/400 (63.50%), Postives = 320/400 (80.00%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS--SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFK 60
           M  +AQQ +GLRC PL S S  S+   ++  QNK A   P + A ++  + + QT ER +
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVA--MSSGQTKERLE 60

Query: 61  LKETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEI 120
           LK+ F++A +RCR  PMEGV+FT+ DF A++E+YDF+ ++G++VKGTV   +ANGALV+I
Sbjct: 61  LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 120

Query: 121 AAKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWE 180
           +AKS AYL +++ACIHRIK +EEAGI PG+ EEFVIIGENE DDSL LSLR IQYELAWE
Sbjct: 121 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLV 240
           RCRQLQAEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+I   + AEEL+ KE+PLKF+ 
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VNEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHD 300
           V+EEQT++VLSNRK +ADS+A+L IGSVV   V  L+ YGAF+DIGGI+GLLH+S+ISHD
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 RIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHR 360
           R+ D+A VL+PGD LKVMIL+ DR++G + LSTKKLEP  GDMI NP LVFEKAEEMA  
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPEL 398
           FRQR+AQAEA+ARAD+L FQPE  LTLSSDGI  P+  EL
Sbjct: 361 FRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSEL 398

[Close]

BLAST of HG10003661 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 279.3 bits (713), Expect = 7.3e-74
Identity = 147/300 (49.00%), Postives = 204/300 (68.00%), Query Frame = 0


Query: 71  RNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIAAKSPAYLPLQE 130
           +++P   + FT +DF A L++YD+    G  V GTV   E  GAL++I AK+ A+LP+QE
Sbjct: 4   QDIPAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQE 63

Query: 131 ACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERCRQLQAEDVVVK 190
             I+R++  EE      +RE F++  ENED  LTLS+R I+Y  AWER RQLQ ED  V+
Sbjct: 64  MSINRVESPEEVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVR 123

Query: 191 GKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVNEEQTRVVLSNR 250
            +V   N+GG LV +EGL+GF+P S I      E+L+ +ELPLKFL V+E++ R+VLS+R
Sbjct: 124 SEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHR 183

Query: 251 KVMADSKA-ELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRIRDVAAVLKPG 310
           + + + K   L +G VV   V  ++ YGAF+DIGG+ GLLHISEISHD I    +V    
Sbjct: 184 RALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVN 243

Query: 311 DILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQRL-AQAEAL 369
           D +KVMI+++D E+G I LSTK+LEP  GDM+ NP +V+EKAEEMA ++R++L  QAE L
Sbjct: 244 DEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQQAEGL 303

[Close]

BLAST of HG10003661 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.9e-70
Identity = 145/293 (49.49%), Postives = 196/293 (66.89%), Query Frame = 0


Query: 78  VSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIAAKSPAYLPLQEACIHRIK 137
           + FTL+DF A L+KYD+    G  V GTV   E+ GAL++I AK+ AY+P+QE  I+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 138 RIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERCRQLQAEDVVVKGKVVDAN 197
             EE       RE F++  ENED  LTLS+R I+Y  AWER RQLQAED  V+  V   N
Sbjct: 70  DPEEVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATN 129

Query: 198 KGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVNEEQTRVVLSNRKVMADSK 257
           +GG LV +EGL+GF+P S I      E+L+ ++LPLKFL V+EE+ R+VLS+R+ + + K
Sbjct: 130 RGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERK 189

Query: 258 AE-LAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRIRDVAAVLKPGDILKVMI 317
              L +  VV  +V  ++ YGAF+DIGG+ GLLHISEISHD I    +V    D +KVMI
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMI 249

Query: 318 LNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQ-RLAQAEAL 369
           +++D E+G I LSTK+LEP  G M+ +  LV E A+EMA  FRQ RLA+A+ +
Sbjct: 250 IDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302

[Close]

BLAST of HG10003661 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-41
Identity = 103/281 (36.65%), Postives = 158/281 (56.23%), Query Frame = 0


Query: 84  DFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIAAKSPAYLPLQEACIHRIKRIEEAG 143
           DF  +LE    D Q G  V+G V     +GA ++I  K+PA+LP +EA +H +  + EA 
Sbjct: 13  DFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAH 72

Query: 144 IYPGLREEFVII-GENEDDSLTLSLRPIQYELAWERCRQLQAEDVVVKGKVVDANKGGVL 203
           +      EF++I  +NED  +T+SLR +  E AW R  +LQ     V+ KV  +NKGGV 
Sbjct: 73  LPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVT 132

Query: 204 VVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVNEEQTRVVLSNRKVMADSKA-ELA 263
             +EGL+ F+P S +      + L  K L + FL VN    ++VLS R+    +   E+ 
Sbjct: 133 ADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIE 192

Query: 264 IGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRIRDVAAVLKPGDILKVMILNIDR 323
           +G ++   V  L+ +G FVD+GG   LL I++IS   + DV A+ K GD ++ +++ ID 
Sbjct: 193 VGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDN 252

Query: 324 EKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQRL 363
            KG I LSTK LE + G+++ N   +   A + A R R++L
Sbjct: 253 TKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]

BLAST of HG10003661 vs. ExPASy TrEMBL
Match: A0A5A7SUN2 (30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00730 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 6.6e-171
Identity = 318/366 (86.89%), Postives = 331/366 (90.44%), Query Frame = 0


Query: 3   LMAQQCTGLRCEPLFSIS---SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 62
           LMAQ  TGLR EPL SIS   SKPLGRS  QN  ARSF VLAA+ISSPIP+P TTERFKL
Sbjct: 9   LMAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKL 68

Query: 63  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 122
           K+TF +AADRC N PMEGVSFTLQ FLASLEKYDFDPQLGSKVKGTVVY EANGALVEIA
Sbjct: 69  KQTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIA 128

Query: 123 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERC 182
           AKSPAYLPLQEA IHRIKR+EEAGIYPG REEFVIIG+NEDD LTLSLRPIQYELAWERC
Sbjct: 129 AKSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERC 188

Query: 183 RQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVN 242
           RQLQA DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEILMIST EELINKELPLK LVV 
Sbjct: 189 RQLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVE 248

Query: 243 EEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRI 302
           EEQTR+VLSNRKVMADSKA+L IGSVVT TVL+L K+GAFVDIGG+HGLLHISEISHDRI
Sbjct: 249 EEQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRI 308

Query: 303 RDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFR 362
            D+A VLKPGDILKVM+LNIDREKGHIRLSTKKLEPN GDMI NPGLVF KAEEMA RFR
Sbjct: 309 LDIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFR 368

Query: 363 QRLAQA 366
           QRLAQA
Sbjct: 369 QRLAQA 374

[Close]

BLAST of HG10003661 vs. ExPASy TrEMBL
Match: A0A1S4E424 (30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501305 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 6.6e-171
Identity = 318/366 (86.89%), Postives = 331/366 (90.44%), Query Frame = 0


Query: 3   LMAQQCTGLRCEPLFSIS---SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 62
           LMAQ  TGLR EPL SIS   SKPLGRS  QN  ARSF VLAA+ISSPIP+P TTERFKL
Sbjct: 9   LMAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKL 68

Query: 63  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 122
           K+TF +AADRC N PMEGVSFTLQ FLASLEKYDFDPQLGSKVKGTVVY EANGALVEIA
Sbjct: 69  KQTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIA 128

Query: 123 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENEDDSLTLSLRPIQYELAWERC 182
           AKSPAYLPLQEA IHRIKR+EEAGIYPG REEFVIIG+NEDD LTLSLRPIQYELAWERC
Sbjct: 129 AKSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERC 188

Query: 183 RQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVVN 242
           RQLQA DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEILMIST EELINKELPLK LVV 
Sbjct: 189 RQLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVE 248

Query: 243 EEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDRI 302
           EEQTR+VLSNRKVMADSKA+L IGSVVT TVL+L K+GAFVDIGG+HGLLHISEISHDRI
Sbjct: 249 EEQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRI 308

Query: 303 RDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFR 362
            D+A VLKPGDILKVM+LNIDREKGHIRLSTKKLEPN GDMI NPGLVF KAEEMA RFR
Sbjct: 309 LDIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFR 368

Query: 363 QRLAQA 366
           QRLAQA
Sbjct: 369 QRLAQA 374

[Close]

BLAST of HG10003661 vs. ExPASy TrEMBL
Match: A0A6J1C966 (30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009464 PE=4 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 6.2e-161
Identity = 301/413 (72.88%), Postives = 349/413 (84.50%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   S P    H+QNK ARS PV AA+ISSPIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSTPFSPRHLQNK-ARSLPVHAAVISSPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 120
           KE F++A +RCRN P+EG+SFTL+DF A+LEKYDFD ++G+KVKGTV   +ANGALV+I 
Sbjct: 61  KEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVDIT 120

Query: 121 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWER 180
           AKS AYLP+QEACIHRIK +EEAGI+PG+REEFVIIGENE DDSL LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVV 240
           CRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+I   STAEEL+NKELPLKF+ V
Sbjct: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFVEV 240

Query: 241 NEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDR 300
           +EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 IRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRF 360
           I D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  F
Sbjct: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           RQR+AQAEA+ARAD+L FQPE  LTL++DGI  P+TPEL V+ GLD+   VPP
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELPVE-GLDLSD-VPP 410

[Close]

BLAST of HG10003661 vs. ExPASy TrEMBL
Match: A0A1S3AXL6 (30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 PE=4 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.8e-160
Identity = 302/413 (73.12%), Postives = 346/413 (83.78%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   SKP    H+ NK +RS PV AA+IS PIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNK-SRSLPVQAAVISGPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEIA 120
           KE F+ A +RCRN P+EG+SFTL+DF A+LEKYDFD +LG+KVKGTV   + NGALV+I 
Sbjct: 61  KEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDIT 120

Query: 121 AKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWER 180
           AKS AYLPLQEACIHRIK +EEAGI+PGLREEFVIIGENE DDSL LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLVV 240
           CRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+I   STAEEL+NKELPLKF+ V
Sbjct: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEV 240

Query: 241 NEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHDR 300
           +EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L+ YGAF+DIGGI+GLLH+S+ISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 IRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRF 360
           I D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA  F
Sbjct: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPELAVKRGLDIEQYVPP 412
           RQR+AQAEALARAD+L FQPE  LTL++DGI  P+TPEL V+ GLD+   VPP
Sbjct: 361 RQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVE-GLDLND-VPP 410

[Close]

BLAST of HG10003661 vs. ExPASy TrEMBL
Match: A0A5A7UEP7 (30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00520 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.7e-156
Identity = 302/438 (68.95%), Postives = 346/438 (79.00%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS-SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFKL 60
           M  MAQQ TGLRC PL S   SKP    H+ NK +RS PV AA+IS PIP+PQT ERFKL
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNK-SRSLPVQAAVISGPIPSPQTKERFKL 60

Query: 61  KETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSK------------------ 120
           KE F+ A +RCRN P+EG+SFTL+DF A+LEKYDFD +LG+K                  
Sbjct: 61  KEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVISGFSFFFFFFFQFCIF 120

Query: 121 -------VKGTVVYAEANGALVEIAAKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVI 180
                  VKGTV   + NGALV+I AKS AYLPLQEACIHRIK +EEAGI+PGLREEFVI
Sbjct: 121 VGAVSFQVKGTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVI 180

Query: 181 IGENE-DDSLTLSLRPIQYELAWERCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVP 240
           IGENE DDSL LSLR IQY+LAWERCRQLQAEDVVVKGKVVDANKGGV+ VVEGL+GFVP
Sbjct: 181 IGENESDDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVP 240

Query: 241 FSEILMISTAEELINKELPLKFLVVNEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKL 300
           FS+I   STAEEL+NKELPLKF+ V+EEQ+R+VLSNRK MADS+A+L IGSVVT TV  L
Sbjct: 241 FSQISTKSTAEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSL 300

Query: 301 QKYGAFVDIGGIHGLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKL 360
           + YGAF+DIGGI+GLLH+S+ISHDRI D+A VL+PGD LKVMIL+ DRE+G + LSTKKL
Sbjct: 301 KPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 360

Query: 361 EPNTGDMICNPGLVFEKAEEMAHRFRQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPV 412
           EP  GDMI NP LVFEKAEEMA  FRQR+AQAEALARAD+L FQPE  LTL++DGI  P+
Sbjct: 361 EPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPI 420

[Close]

BLAST of HG10003661 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 494.2 bits (1271), Expect = 1.0e-139
Identity = 254/400 (63.50%), Postives = 320/400 (80.00%), Query Frame = 0


Query: 1   MPLMAQQCTGLRCEPLFSIS--SKPLGRSHMQNKVARSFPVLAALISSPIPTPQTTERFK 60
           M  +AQQ +GLRC PL S S  S+   ++  QNK A   P + A ++  + + QT ER +
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVA--MSSGQTKERLE 60

Query: 61  LKETFKNAADRCRNVPMEGVSFTLQDFLASLEKYDFDPQLGSKVKGTVVYAEANGALVEI 120
           LK+ F++A +RCR  PMEGV+FT+ DF A++E+YDF+ ++G++VKGTV   +ANGALV+I
Sbjct: 61  LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 120

Query: 121 AAKSPAYLPLQEACIHRIKRIEEAGIYPGLREEFVIIGENE-DDSLTLSLRPIQYELAWE 180
           +AKS AYL +++ACIHRIK +EEAGI PG+ EEFVIIGENE DDSL LSLR IQYELAWE
Sbjct: 121 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLKFLV 240
           RCRQLQAEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+I   + AEEL+ KE+PLKF+ 
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VNEEQTRVVLSNRKVMADSKAELAIGSVVTETVLKLQKYGAFVDIGGIHGLLHISEISHD 300
           V+EEQT++VLSNRK +ADS+A+L IGSVV   V  L+ YGAF+DIGGI+GLLH+S+ISHD
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 RIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHR 360
           R+ D+A VL+PGD LKVMIL+ DR++G + LSTKKLEP  GDMI NP LVFEKAEEMA  
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRLAQAEALARADLLSFQPEGRLTLSSDGIFVPVTPEL 398
           FRQR+AQAEA+ARAD+L FQPE  LTLSSDGI  P+  EL
Sbjct: 361 FRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSEL 398

[Close]

BLAST of HG10003661 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-20
Identity = 76/238 (31.93%), Postives = 129/238 (54.20%), Query Frame = 0


Query: 154 IIGENEDDSLTLSLRPIQYELAWERCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVP 213
           ++G        LS R     +AW R RQ++  +  ++ K+ + N GG+L  +EGL+ F+P
Sbjct: 251 VLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIP 310

Query: 214 FSEIL-MISTAEELINKELPLKFLV----VNEEQTRVVLSNRKVMADSKAELAIGSVVTE 273
             E++  ++T  EL  + +  +FLV    +NE++  ++LS +  +A  K  L  G+++  
Sbjct: 311 KQELVKKVNTFTEL-KENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEG 370

Query: 274 TVLKLQKYGAFVDIG--GIHGLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHI 333
           TV+K+  YGA V +G     GLLHIS I+  RI  V+ VL+  + +KV+++        I
Sbjct: 371 TVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKI 430

Query: 334 RLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQRL---AQAEALARADLLSFQPEGR 382
            LS   LE   G  I +   VF +AEEMA ++R+++   A +    R  + S  P+G+
Sbjct: 431 SLSIADLESEPGLFISDREKVFTEAEEMAKKYREKMPLVATSPISDRPPITSSFPQGK 484

[Close]

BLAST of HG10003661 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-17
Identity = 55/177 (31.07%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 176 WERCRQLQAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEILMISTAEE---------- 235
           W+  +         +G+V   N GG+L+    L GF+P+ ++    + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 236 -LINKELPLKFLVVNEEQTRVVLSNRKVMADSKAE-LAIGSVVTETVLKLQKYGAFV--- 295
            L+  +LP+K +  +EE  +++LS +  +    ++ + +G V    V  ++ YGAF+   
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 296 -DIGGIH--GLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLE 335
            D G  H  GL+H+SE+S D ++DV  VL+ GD ++V++ NID+EK  I LS K+LE
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLE 273

[Close]

BLAST of HG10003661 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-09
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 236 LVVNEEQTRVVLSNRKVMADSK--------AELAIGSVVTETVLKLQKYGAFVDI-GGIH 295
           L ++     +V  N+ VM  ++         EL +G V   TV  +++YGAFV+  GG  
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702

Query: 296 GLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEP 336
           GLLH+SE+SH+ +  V+ VL  G  +  M +  D  +G+I+LS K L P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLP 750

[Close]

BLAST of HG10003661 vs. TAIR 10
Match: AT3G11964.1 (RNA binding;RNA binding )

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-07
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = 0


Query: 176  WERCRQLQAEDVVVKGKVVDA-NKGGVLVVVEGLKGFVPFSEILMISTAEELINKELPLK 235
            +ER   L + D+ V+G V +  +KG  +++   ++  V  S +      E    KE P+ 
Sbjct: 1336 FERIEDL-SPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEP--EKEFPVG 1395

Query: 236  FLV------VNEEQTRVVLSNRKVMADSK--------AELAIGSVVTETVLKLQKYGAFV 295
             LV      V     R+ ++ + V A  +         +L +G +++  + +++ +G F+
Sbjct: 1396 KLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFI 1455

Query: 296  DIG--GIHGLLHISEISHDRIRDVAAVLKPGDILKVMILNIDREKGHIRLSTKKLEPNTG 340
            DI   G+ GL HIS++S DR+ +V A  K G+ ++  IL +D EK  I L  K      G
Sbjct: 1456 DIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNG 1513

The following BLAST results are available for this feature:

BLAST of HG10003661 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885297.1	2.5e-196	88.94	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1...	[more]
XP_016902972.1	1.4e-170	86.89	PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA00349...	[more]
XP_022138241.1	1.3e-160	72.88	30S ribosomal protein S1, chloroplastic [Momordica charantia]	[more]
XP_008438974.1	3.7e-160	73.12	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo]	[more]
XP_038878013.1	3.2e-159	72.40	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of HG10003661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	1.9e-143	65.70	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	1.4e-138	63.50	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	7.3e-74	49.00	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	4.9e-70	49.49	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
O33698	1.3e-41	36.65	30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805...	[more]

BLAST of HG10003661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUN2	6.6e-171	86.89	30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4E424	6.6e-171	86.89	30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1C966	6.2e-161	72.88	30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3AXL6	1.8e-160	73.12	30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 ...	[more]
A0A5A7UEP7	2.7e-156	68.95	30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of HG10003661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30510.1	1.0e-139	63.50	ribosomal protein S1	[more]
AT1G71720.1	2.1e-20	31.93	Nucleic acid-binding proteins superfamily	[more]
AT3G23700.1	4.9e-17	31.07	Nucleic acid-binding proteins superfamily	[more]
AT5G14580.1	2.9e-09	35.78	polyribonucleotide nucleotidyltransferase, putative	[more]
AT3G11964.1	2.1e-07	27.62	RNA binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 348..368
None	No IPR available	GENE3D	2.40.50.140		coord: 83..180 e-value: 5.2E-7 score: 31.4 coord: 181..256 e-value: 3.0E-6 score: 28.9
None	No IPR available	GENE3D	2.40.50.140		coord: 257..333 e-value: 3.4E-22 score: 80.2
None	No IPR available	PANTHER	PTHR10724	30S RIBOSOMAL PROTEIN S1	coord: 3..410
None	No IPR available	PANTHER	PTHR10724:SF11	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	coord: 3..410
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 197..250 e-value: 7.64671E-13 score: 61.3208
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 97..168 e-value: 9.6E-5 score: 31.8 coord: 184..250 e-value: 3.3E-5 score: 33.3 coord: 261..331 e-value: 1.4E-22 score: 91.0
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 260..331 e-value: 1.7E-16 score: 60.3 coord: 184..248 e-value: 5.0E-7 score: 30.0
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 99..168 score: 11.921642
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 186..250 score: 13.181564
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 263..331 score: 21.033575
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 261..339
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 88..194
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 181..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003661.1	HG10003661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding