HG10003610 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003610
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 4110782 .. 4111511 (-)
RNA-Seq Expression	HG10003610
Synteny	HG10003610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCCCTGCCCCTGCCCCCGCCGCAAGATTCTGAACCGGCTCCAGTGAAATTGCCGAAAGAATCATCTGAACTGCCGCAAGAATTTGAGCTGCAACCGGCAGAATCTGAAATGCCGCAAGAATTTGAGGAAAACTCAGTACATTCGCCGCTATTGCAAGAGACTCCGCCACGTCTTGTTCGTTTGGATACTGCCGCCAAATTAGCCCATAAACTGGTAATCATTTTCTTCTTCATTTGTTTAAATGAAAATCGCTATGGTTTCCAAAATCGCTATTATTTTCTTCTTGTGTGCACAGTTGGAGCAGTGGTATAAGGAATCTGGGAAGCATGCAAATAATGACGATAGCGAAGCAACTGCTCATGGACCTCCAAGGTTAGTACATATATACTACTATCAATCACACACACTAAAGGGCCTAGTTTGTTTATTGACGTCTTTTGGCACCCTTTTGTCAAGACCTGGACTCGGAGAGATGTTGAAAGAACCAATAGATGAGGATGGGGATGATTTTGAGTCTTTTGACTCATTTTATGACCATCAGAATCTCGCGAGTCGAATGCCCGAGTTCGATCCATCTGATTTAAGTCAGTATGGTGGTAGATATGTGCCTGCCATAAGGCCAACAGAATCCGAGCCTTTGGATGTGACACAGAATTATGTGATTGTGAAGACATATAAGTCGGATGATGAGGAAGATAGTGATGCGCATGGTCAAAGAGATTAG

mRNA sequence

ATGGAGCCCCTGCCCCTGCCCCCGCCGCAAGATTCTGAACCGGCTCCAGTGAAATTGCCGAAAGAATCATCTGAACTGCCGCAAGAATTTGAGCTGCAACCGGCAGAATCTGAAATGCCGCAAGAATTTGAGGAAAACTCAGTACATTCGCCGCTATTGCAAGAGACTCCGCCACGTCTTGTTCGTTTGGATACTGCCGCCAAATTAGCCCATAAACTGTTGGAGCAGTGGTATAAGGAATCTGGGAAGCATGCAAATAATGACGATAGCGAAGCAACTGCTCATGGACCTCCAAGGTTAGTACATATATACTACTATCAATCACACACACTAAAGGGCCTAGTTTGTTTATTGACGTCTTTTGGCACCCTTTTGTCAAGACCTGGACTCGGAGAGATGTTGAAAGAACCAATAGATGAGGATGGGGATGATTTTGAGTCTTTTGACTCATTTTATGACCATCAGAATCTCGCGAGTCGAATGCCCGAGTTCGATCCATCTGATTTAAGTCAGTATGGTGGTAGATATGTGCCTGCCATAAGGCCAACAGAATCCGAGCCTTTGGATGTGACACAGAATTATGTGATTGTGAAGACATATAAGTCGGATGATGAGGAAGATAGTGATGCGCATGGTCAAAGAGATTAG

Coding sequence (CDS)

ATGGAGCCCCTGCCCCTGCCCCCGCCGCAAGATTCTGAACCGGCTCCAGTGAAATTGCCGAAAGAATCATCTGAACTGCCGCAAGAATTTGAGCTGCAACCGGCAGAATCTGAAATGCCGCAAGAATTTGAGGAAAACTCAGTACATTCGCCGCTATTGCAAGAGACTCCGCCACGTCTTGTTCGTTTGGATACTGCCGCCAAATTAGCCCATAAACTGTTGGAGCAGTGGTATAAGGAATCTGGGAAGCATGCAAATAATGACGATAGCGAAGCAACTGCTCATGGACCTCCAAGGTTAGTACATATATACTACTATCAATCACACACACTAAAGGGCCTAGTTTGTTTATTGACGTCTTTTGGCACCCTTTTGTCAAGACCTGGACTCGGAGAGATGTTGAAAGAACCAATAGATGAGGATGGGGATGATTTTGAGTCTTTTGACTCATTTTATGACCATCAGAATCTCGCGAGTCGAATGCCCGAGTTCGATCCATCTGATTTAAGTCAGTATGGTGGTAGATATGTGCCTGCCATAAGGCCAACAGAATCCGAGCCTTTGGATGTGACACAGAATTATGTGATTGTGAAGACATATAAGTCGGATGATGAGGAAGATAGTGATGCGCATGGTCAAAGAGATTAG

Protein sequence

MEPLPLPPPQDSEPAPVKLPKESSELPQEFELQPAESEMPQEFEENSVHSPLLQETPPRLVRLDTAAKLAHKLLEQWYKESGKHANNDDSEATAHGPPRLVHIYYYQSHTLKGLVCLLTSFGTLLSRPGLGEMLKEPIDEDGDDFESFDSFYDHQNLASRMPEFDPSDLSQYGGRYVPAIRPTESEPLDVTQNYVIVKTYKSDDEEDSDAHGQRD

Homology

[Close]

BLAST of HG10003610 vs. NCBI nr
Match: XP_031743735.1 (protein bfr2-like [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-17
Identity = 84/226 (37.17%), Postives = 108/226 (47.79%), Query Frame = 0


Query: 1   MEPLPLPPPQDSEP-APVKLPKESSELPQEFELQPAESEMPQEF----------EENSVH 60
           M PLPLP PQDS+P APVK            +LQP E + PQE           E + V 
Sbjct: 1   MAPLPLPQPQDSQPQAPVK------------QLQPQEFDPPQESQPHALAKLLQESDPVD 60

Query: 61  SPLLQETP-PRLVRLDTAAKLAHKLLEQWYKESGKHANNDDSEATAHGPPRLVHIYYYQS 120
            P   E+P PR+V L+ AAKLA+KLL +WYK++GK +N+++ EATA             +
Sbjct: 61  PPEESESPRPRIVVLNMAAKLAYKLLAKWYKQAGKVSNDENHEATA------------AN 120

Query: 121 HTLKGLVCLLTSFGTLLSRPGLGEMLKEPIDEDGDDFESFDSFYDHQNLASRMPEFDPSD 180
           H+    +C                                               FDP +
Sbjct: 121 HSRPPRIC---------------------------------------------RSFDPFE 156

Query: 181 LSQYGGRYVPAIRPTESEPLDVTQNYVIVKTYKSDDEEDSDAHGQR 215
           LSQ   RYV  IRPTE E L+VT +YVIVKTYKSD EED  A+G++
Sbjct: 181 LSQNAVRYVAGIRPTERETLNVTDDYVIVKTYKSDAEEDI-ANGEK 156

[Close]

BLAST of HG10003610 vs. NCBI nr
Match: KAE8646583.1 (hypothetical protein Csa_005569, partial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-17
Identity = 84/226 (37.17%), Postives = 108/226 (47.79%), Query Frame = 0


Query: 1   MEPLPLPPPQDSEP-APVKLPKESSELPQEFELQPAESEMPQEF----------EENSVH 60
           M PLPLP PQDS+P APVK            +LQP E + PQE           E + V 
Sbjct: 1   MAPLPLPQPQDSQPQAPVK------------QLQPQEFDPPQESQPHALAKLLQESDPVD 60

Query: 61  SPLLQETP-PRLVRLDTAAKLAHKLLEQWYKESGKHANNDDSEATAHGPPRLVHIYYYQS 120
            P   E+P PR+V L+ AAKLA+KLL +WYK++GK +N+++ EATA             +
Sbjct: 61  PPEESESPRPRIVVLNMAAKLAYKLLAKWYKQAGKVSNDENHEATA------------AN 120

Query: 121 HTLKGLVCLLTSFGTLLSRPGLGEMLKEPIDEDGDDFESFDSFYDHQNLASRMPEFDPSD 180
           H+    +C                                               FDP +
Sbjct: 121 HSRPPRIC---------------------------------------------RSFDPFE 156

Query: 181 LSQYGGRYVPAIRPTESEPLDVTQNYVIVKTYKSDDEEDSDAHGQR 215
           LSQ   RYV  IRPTE E L+VT +YVIVKTYKSD EED  A+G++
Sbjct: 181 LSQNAVRYVAGIRPTERETLNVTDDYVIVKTYKSDAEEDI-ANGEK 156

[Close]

BLAST of HG10003610 vs. ExPASy TrEMBL
Match: A0A0A0KAJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014740 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.6e-21
Identity = 98/237 (41.35%), Postives = 126/237 (53.16%), Query Frame = 0


Query: 1   MEPLPLPPPQDSEP-APVKLPKESSELPQEFELQPAESEMPQEF----------EENSVH 60
           M PLPLP PQDS+P APVK            +LQP E + PQE           E + V 
Sbjct: 1   MAPLPLPQPQDSQPQAPVK------------QLQPQEFDPPQESQPHALAKLLQESDPVD 60

Query: 61  SPLLQETP-PRLVRLDTAAKLAHKLLEQWYKESGKHANNDDSEATAHG---PPRLVHIY- 120
            P   E+P PR+V L+ AAKLA+KLL +WYK++GK +N+++ EATA     PPR+   + 
Sbjct: 61  PPEESESPRPRIVVLNMAAKLAYKLLAKWYKQAGKVSNDENHEATAANHSRPPRICRSFD 120

Query: 121 -YYQSHTLKGLVCLL--TSFGTLLSRPG--LGEMLKEPIDEDGDDFESFDSFYD--HQNL 180
            +  S      V  +  T   TL       + +  K   +ED   F  F   Y   HQ  
Sbjct: 121 PFELSQNAVRYVAGIRPTERETLNVTDDYVIVKTYKSDAEEDIILFVLFLLNYKAYHQQH 180

Query: 181 ASRMPEFDPSDLSQYGGRYVPAIRPTESEPLDVTQNYVIVKTYKSDDEEDSDAHGQR 215
                 FDP +LSQ   RYV  IRPTE E L+VT +YVIVKTYKSD E+D  AHG++
Sbjct: 181 FRICRSFDPFELSQNAVRYVAGIRPTERETLNVTDDYVIVKTYKSDAEDDI-AHGEK 224

The following BLAST results are available for this feature:

BLAST of HG10003610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743735.1	7.0e-17	37.17	protein bfr2-like [Cucumis sativus]	[more]
KAE8646583.1	7.0e-17	37.17	hypothetical protein Csa_005569, partial [Cucumis sativus]	[more]

BLAST of HG10003610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAJ4	8.6e-21	41.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014740 PE=4 SV=1	[more]

BLAST of HG10003610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003610.1	HG10003610.1	mRNA